FastQCFastQC Report
Thu 2 Feb 2017
SRR4064176_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4064176_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1217809
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14290.11734188201926576No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAACGCA300.005748070329.3301564
TCATGCG500.002582071321.9976184
TTCGTAC550.004481111720.00194234
CGGGAAT550.00448430819.99947740
GAACCGT550.004486439319.9978356
TTAACGG808.979112E-519.25265935
GGCGTTA2200.018.99872442
TAGGACG3600.018.9423944
CTATACT1404.087269E-918.8551034
CCGAACG600.007411495318.3336079
GTAGGAC5900.018.2692093
GTAGAAC5900.018.2692093
TAGGACA3400.018.1156864
GTAACAC1951.8189894E-1218.0493283
CGCAATA3050.018.03527836
TGTAGGA6000.017.965462
TATACTG2003.6379788E-1217.5980955
ATACGAA2950.017.15209440
CTAGCGG2700.017.11066429
AGGACGT3900.016.9212445
Produced by FastQC (version 0.11.5)