##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064174_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1064222 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.30811334477205 32.0 32.0 32.0 32.0 32.0 2 31.415752540353424 32.0 32.0 32.0 32.0 32.0 3 31.47484359466352 32.0 32.0 32.0 32.0 32.0 4 31.560614232744673 32.0 32.0 32.0 32.0 32.0 5 31.52005690542011 32.0 32.0 32.0 32.0 32.0 6 35.08883108975383 36.0 36.0 36.0 36.0 36.0 7 35.11436053755701 36.0 36.0 36.0 36.0 36.0 8 35.06384570136682 36.0 36.0 36.0 36.0 36.0 9 35.1636726171795 36.0 36.0 36.0 36.0 36.0 10 35.02362664932693 36.0 36.0 36.0 36.0 36.0 11 35.16531043334943 36.0 36.0 36.0 36.0 36.0 12 35.073023297770575 36.0 36.0 36.0 36.0 36.0 13 35.1046802264941 36.0 36.0 36.0 36.0 36.0 14 35.05727658326928 36.0 36.0 36.0 36.0 36.0 15 35.0338218905454 36.0 36.0 36.0 36.0 36.0 16 35.046120076450215 36.0 36.0 36.0 36.0 36.0 17 35.01695886760469 36.0 36.0 36.0 36.0 36.0 18 35.00193286739045 36.0 36.0 36.0 36.0 36.0 19 35.002451556160274 36.0 36.0 36.0 36.0 36.0 20 34.99409991524325 36.0 36.0 36.0 36.0 36.0 21 34.987731883009374 36.0 36.0 36.0 36.0 36.0 22 34.975464705672316 36.0 36.0 36.0 36.0 36.0 23 34.91962109409503 36.0 36.0 36.0 32.0 36.0 24 34.89453986104403 36.0 36.0 36.0 32.0 36.0 25 34.868560319181526 36.0 36.0 36.0 32.0 36.0 26 34.81237091509102 36.0 36.0 36.0 32.0 36.0 27 34.808054146597236 36.0 36.0 36.0 32.0 36.0 28 34.77588604633244 36.0 36.0 36.0 32.0 36.0 29 34.75278278404318 36.0 36.0 36.0 32.0 36.0 30 34.73189146625422 36.0 36.0 36.0 32.0 36.0 31 34.71662773368715 36.0 36.0 36.0 32.0 36.0 32 34.671902103132616 36.0 36.0 36.0 32.0 36.0 33 34.65128234522496 36.0 36.0 36.0 32.0 36.0 34 34.64081742343233 36.0 36.0 36.0 32.0 36.0 35 34.59975268318077 36.0 36.0 36.0 32.0 36.0 36 34.562327221200086 36.0 36.0 36.0 32.0 36.0 37 34.547373574310626 36.0 36.0 36.0 32.0 36.0 38 34.510165172304276 36.0 36.0 36.0 32.0 36.0 39 34.483066503041655 36.0 36.0 36.0 32.0 36.0 40 34.4744620953147 36.0 36.0 36.0 32.0 36.0 41 34.46333377810269 36.0 36.0 36.0 32.0 36.0 42 34.39179889158465 36.0 36.0 36.0 32.0 36.0 43 34.38184608098686 36.0 36.0 36.0 32.0 36.0 44 34.309017291504965 36.0 36.0 36.0 32.0 36.0 45 34.27299567195566 36.0 36.0 36.0 32.0 36.0 46 34.23580888198139 36.0 36.0 36.0 32.0 36.0 47 34.20697937084556 36.0 36.0 36.0 32.0 36.0 48 34.15227649870046 36.0 36.0 36.0 32.0 36.0 49 34.12753823920197 36.0 36.0 36.0 32.0 36.0 50 33.54935154507236 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 5.0 20 8.0 21 34.0 22 122.0 23 365.0 24 906.0 25 2118.0 26 4275.0 27 8044.0 28 12679.0 29 19570.0 30 27396.0 31 39142.0 32 55395.0 33 87351.0 34 178438.0 35 628372.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.54309879008575 18.073910489839072 11.879149536003759 26.50384118407142 2 15.571231109386318 20.610607403175475 37.747493701954205 26.070667785484 3 18.20181579338068 24.729143840829604 28.93401539910056 28.135024966689155 4 12.307770371219538 16.245388650112478 35.967025676973414 35.47981530169457 5 13.910349532334418 37.384399119732535 33.71928037571108 14.985970972221963 6 33.8477946289301 35.94482343876266 16.860799458758528 13.346582473548702 7 29.56291074606614 30.6959450189904 21.3004429526922 18.44070128225126 8 27.49379358817991 34.06638840392324 19.534082174583876 18.905735833312974 9 27.500664814270152 13.964200573760557 18.567910190404685 39.9672244215646 10 15.579285252507027 27.526479785906517 32.32798475485995 24.566250206726505 11 36.988147209886655 20.91537292031174 22.99322885638523 19.103251013416372 12 24.764663763763576 23.575626138155386 29.709402737398776 21.950307360682263 13 29.97909257058019 19.871924376183383 25.205808976569582 24.94317407666684 14 23.21803762379959 19.922384469376635 25.79466651632181 31.064911390501965 15 24.63025348274485 28.262644771771562 22.492729109403996 24.614372636079594 16 24.768914610460087 25.81165307451394 25.016326557459617 24.40310575756636 17 23.507031427653253 26.298366318305767 25.920343687689222 24.274258566351758 18 24.12783459043674 25.173765925998314 27.36119163442863 23.337207849136316 19 25.482231117626053 24.76856289113153 25.939185506756125 23.81002048448629 20 25.71926323089153 24.671541626026343 25.718793400575446 23.890401742506675 21 26.104327856405902 24.336839494015347 25.070614965674455 24.4882176839043 22 25.493155074284523 24.913857016272026 25.470885221932704 24.122102687510747 23 24.081081512817455 24.787049209133887 26.118831474526242 25.013037803522415 24 24.756557650474765 24.977565623487735 26.109479757379855 24.15639696865765 25 24.595449185072425 24.820593776575002 26.156708528901856 24.427248509450717 26 23.99579392091895 25.69514008047556 26.431767737230942 23.87729826137455 27 24.524488121717507 25.2672272919057 25.691408037633117 24.516876548743667 28 23.955353753284196 25.336688630204442 25.994749048100523 24.713208568410845 29 24.288217854810444 25.22404258618016 25.698109838892307 24.789629720117084 30 23.99751922832966 25.411559080423046 26.11247104591777 24.478450645329524 31 24.889677414504696 24.880186289176734 25.55696930513686 24.67316699118171 32 24.342767363561446 25.462954697297587 25.43664377930026 24.757634159840705 33 24.037253481354934 25.259897629042005 26.081947510216892 24.62090137938617 34 24.6177164566335 25.28159729824459 25.993495565200803 24.107190679921107 35 24.745040589594517 25.274175921758257 26.092827495867745 23.887955992779478 36 24.151829218441506 25.592800967539137 25.89106915142044 24.364300662598918 37 24.632605482327758 25.390933702192196 25.373737411704568 24.602723403775478 38 24.316918323391107 25.60950168585573 25.62481910410958 24.448760886643587 39 24.916907619691088 25.08107203970768 25.409306910410578 24.592713430190656 40 25.305793371352536 25.10714631380033 25.84995851339834 23.73710180144879 41 24.485991144388564 25.272133390466312 26.201953797463595 24.03992166768153 42 24.980478275209805 25.871289110401346 25.646894988625245 23.5013376257636 43 24.23438009477515 25.35362144252553 25.949090540056734 24.46290792264258 44 23.823538255679342 25.76432426743644 25.526494820561396 24.885642656322823 45 24.01057689958523 25.88803295602543 25.626523436252 24.474866708137334 46 24.059465762834183 25.205575220656844 25.654547180112175 25.0804118363968 47 24.66599386206754 25.225943946731917 25.78965271630762 24.318409474892924 48 24.597045107080334 25.725497344956448 25.142618734618743 24.53483881334447 49 24.424271012651566 25.709066580468626 25.136344501492182 24.73031790538763 50 24.22409799542009 26.290037802582756 25.064249356096944 24.421614845900212 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 234.0 1 150.5 2 67.0 3 170.5 4 274.0 5 298.0 6 322.0 7 304.5 8 287.0 9 377.5 10 468.0 11 743.5 12 1019.0 13 1682.5 14 2346.0 15 3013.0 16 3680.0 17 3743.5 18 3807.0 19 3796.0 20 3785.0 21 4109.5 22 4434.0 23 5054.5 24 5675.0 25 6394.0 26 7113.0 27 8731.5 28 10350.0 29 12675.0 30 15000.0 31 18053.0 32 21106.0 33 24954.5 34 28803.0 35 33472.5 36 38142.0 37 41778.0 38 45414.0 39 47083.5 40 48753.0 41 51471.5 42 54190.0 43 56037.0 44 57884.0 45 62855.5 46 67827.0 47 71349.0 48 74871.0 49 77379.0 50 79887.0 51 78479.0 52 77071.0 53 76115.5 54 75160.0 55 74676.0 56 74192.0 57 71219.5 58 68247.0 59 62033.5 60 55820.0 61 49241.5 62 42663.0 63 36951.0 64 31239.0 65 26415.0 66 21591.0 67 17986.0 68 14381.0 69 12647.0 70 10913.0 71 8544.5 72 6176.0 73 5249.5 74 4323.0 75 3354.5 76 2386.0 77 2042.5 78 1699.0 79 1423.5 80 1148.0 81 916.5 82 685.0 83 566.0 84 447.0 85 303.5 86 160.0 87 119.0 88 78.0 89 59.0 90 40.0 91 32.5 92 25.0 93 17.0 94 9.0 95 13.5 96 18.0 97 12.5 98 7.0 99 6.5 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.009114639614666865 2 2.818960705567072E-4 3 3.758614274089429E-4 4 0.0 5 0.0 6 1.8793071370447144E-4 7 0.0 8 0.0 9 0.0014094803527835357 10 0.0013155149959313 11 0.0 12 0.0 13 6.5775749796565E-4 14 1.8793071370447144E-4 15 0.004416371772055078 16 4.698267842611786E-4 17 0.0 18 2.818960705567072E-4 19 1.8793071370447144E-4 20 7.517228548178858E-4 21 0.0 22 2.818960705567072E-4 23 8.456882116701214E-4 24 6.5775749796565E-4 25 0.0015974110664880071 26 0.004510337128907315 27 0.004980163913168493 28 0.0031948221329760143 29 0.0025370646350103645 30 0.0034767182035327217 31 0.0065775749796565 32 0.002349133921305893 33 0.004980163913168493 34 0.002349133921305893 35 0.003100856776123779 36 0.007423263191326621 37 0.003664648917237193 38 0.006953436407065443 39 0.004228441058350608 40 0.0021612032076014213 41 0.0035706835603849575 42 0.0021612032076014213 43 0.0017853417801924787 44 0.0013155149959313 45 0.0015034457096357715 46 0.0012215496390790644 47 0.0018793071370447143 48 0.00197327249389695 49 5.637921411134144E-4 50 8.456882116701214E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1064222.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 64.50496092057027 #Duplication Level Percentage of deduplicated Percentage of total 1 79.83329528374855 51.49643592438547 2 12.952725022486678 16.710300427807915 3 3.539014014284573 6.848518820663306 4 1.4013935602026106 3.615873473408329 5 0.6662057807276699 2.1486788925448175 6 0.40328442209978616 1.560830753245288 7 0.2498013323190048 1.1279397625400653 8 0.1740078915686291 0.8979497796404198 9 0.12457788196516995 0.7232302266957633 >10 0.5627284893051708 6.3700731194863085 >50 0.048549677312563745 2.236583755007213 >100 0.0416314435274652 5.156033089783183 >500 0.0026386109545885736 1.0093067343062245 >1k 1.4658949747714298E-4 0.09824524048568177 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.698267842611786E-4 2 0.0 0.0 0.0 0.0 4.698267842611786E-4 3 0.0 0.0 0.0 0.0 4.698267842611786E-4 4 0.0 0.0 0.0 0.0 4.698267842611786E-4 5 0.0 0.0 0.0 0.0 4.698267842611786E-4 6 0.0 0.0 0.0 0.0 5.637921411134143E-4 7 0.0 0.0 0.0 0.0 5.637921411134143E-4 8 0.0 0.0 0.0 0.0 5.637921411134143E-4 9 0.0 0.0 0.0 0.0 5.637921411134143E-4 10 0.0 0.0 0.0 0.0 6.577574979656501E-4 11 0.0 0.0 0.0 0.0 6.577574979656501E-4 12 0.0 0.0 0.0 0.0 0.0011275842822268285 13 0.0 0.0 0.0 0.0 0.0013155149959313002 14 0.0 0.0 0.0 0.0 0.0013155149959313002 15 0.0 0.0 0.0 0.0 0.0017853417801924787 16 0.0 0.0 0.0 0.0 0.0018793071370447143 17 0.0 0.0 0.0 0.0 0.0018793071370447143 18 0.0 0.0 0.0 9.396535685223572E-5 0.00197327249389695 19 0.0 0.0 0.0 9.396535685223572E-5 0.00197327249389695 20 0.0 0.0 0.0 9.396535685223572E-5 0.002067237850749186 21 0.0 0.0 0.0 1.8793071370447144E-4 0.002349133921305893 22 0.0 0.0 0.0 3.758614274089429E-4 0.0024430992781581287 23 0.0 0.0 0.0 0.0012215496390790644 0.0024430992781581287 24 0.0 0.0 0.0 0.002349133921305893 0.0024430992781581287 25 0.0 0.0 0.0 0.0029129260624193073 0.0024430992781581287 26 0.0 0.0 0.0 0.0037586142740894286 0.0024430992781581287 27 0.0 0.0 0.0 0.005168094626872965 0.0024430992781581287 28 0.0 0.0 0.0 0.007611193905031093 0.0024430992781581287 29 0.0 0.0 0.0 0.01381290745727865 0.0024430992781581287 30 0.0 0.0 0.0 0.02696805741659165 0.0024430992781581287 31 0.0 0.0 0.0 0.05562749125652355 0.0024430992781581287 32 0.0 0.0 0.0 0.08597830151979569 0.0025370646350103645 33 0.0 0.0 0.0 0.11670497321047676 0.0025370646350103645 34 0.0 0.0 0.0 0.14827733311282795 0.0028189607055670715 35 0.0 0.0 0.0 0.18482985692834766 0.0028189607055670715 36 0.0 0.0 0.0 0.23528925355799823 0.0028189607055670715 37 0.0 0.0 0.0 0.3156296336666598 0.0028189607055670715 38 0.0 0.0 0.0 0.42425358618784426 0.0029129260624193073 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCCTAA 425 0.0 21.220583 1 GTGTATA 335 0.0 20.355383 1 GGGTATA 65 4.936249E-4 20.304873 1 GCTATAC 105 1.7946586E-6 18.854525 3 ATACGAA 240 0.0 18.33165 40 GTCCTAC 730 0.0 18.079681 1 TAGGACG 660 0.0 17.997501 4 ATTTCGT 335 0.0 17.729715 42 GTATCAA 2465 0.0 17.222761 1 TACGAAT 230 0.0 17.215809 41 ATTCGTA 270 0.0 17.111952 24 ATACCGT 170 2.4701876E-9 16.821194 6 CGCGCGT 225 1.8189894E-12 16.619915 7 GTAGGAC 835 0.0 16.596498 3 CGTCGTA 160 2.1305823E-8 16.498486 10 TATGGCG 815 0.0 16.463972 16 TAGGACC 630 0.0 16.41042 4 TAGCGCG 230 1.8189894E-12 16.258612 4 TATTGCG 285 0.0 16.211323 29 CTATACT 95 3.349383E-4 16.208277 4 >>END_MODULE