##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064172_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1614007 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.287135681567676 32.0 32.0 32.0 32.0 32.0 2 31.291499355331172 32.0 32.0 32.0 32.0 32.0 3 31.4013576149298 32.0 32.0 32.0 32.0 32.0 4 31.500606874691375 32.0 32.0 32.0 32.0 32.0 5 31.426446725447907 32.0 32.0 32.0 32.0 32.0 6 35.00579737262602 36.0 36.0 36.0 36.0 36.0 7 35.0360512686748 36.0 36.0 36.0 36.0 36.0 8 34.96633657722674 36.0 36.0 36.0 36.0 36.0 9 35.10729755199327 36.0 36.0 36.0 36.0 36.0 10 34.933319372220815 36.0 36.0 36.0 32.0 36.0 11 35.09900700554582 36.0 36.0 36.0 36.0 36.0 12 34.99877323952126 36.0 36.0 36.0 36.0 36.0 13 35.0442879120103 36.0 36.0 36.0 36.0 36.0 14 34.98262832812993 36.0 36.0 36.0 36.0 36.0 15 34.94850084293315 36.0 36.0 36.0 36.0 36.0 16 34.9623991717508 36.0 36.0 36.0 36.0 36.0 17 34.92697243568337 36.0 36.0 36.0 32.0 36.0 18 34.92267877400779 36.0 36.0 36.0 32.0 36.0 19 34.92538260366901 36.0 36.0 36.0 32.0 36.0 20 34.91981075670675 36.0 36.0 36.0 32.0 36.0 21 34.91375192300901 36.0 36.0 36.0 32.0 36.0 22 34.902841809236264 36.0 36.0 36.0 32.0 36.0 23 34.8443755200566 36.0 36.0 36.0 32.0 36.0 24 34.812591271289406 36.0 36.0 36.0 32.0 36.0 25 34.784038111358875 36.0 36.0 36.0 32.0 36.0 26 34.72707119609766 36.0 36.0 36.0 32.0 36.0 27 34.72003714977692 36.0 36.0 36.0 32.0 36.0 28 34.697822871895845 36.0 36.0 36.0 32.0 36.0 29 34.66600702475268 36.0 36.0 36.0 32.0 36.0 30 34.641738852433726 36.0 36.0 36.0 32.0 36.0 31 34.645339828142006 36.0 36.0 36.0 32.0 36.0 32 34.597611410607264 36.0 36.0 36.0 32.0 36.0 33 34.58172486240766 36.0 36.0 36.0 32.0 36.0 34 34.55702670434515 36.0 36.0 36.0 32.0 36.0 35 34.52847850102261 36.0 36.0 36.0 32.0 36.0 36 34.5013578008026 36.0 36.0 36.0 32.0 36.0 37 34.496394377471724 36.0 36.0 36.0 32.0 36.0 38 34.45347386969201 36.0 36.0 36.0 32.0 36.0 39 34.448193223449465 36.0 36.0 36.0 32.0 36.0 40 34.42620694953615 36.0 36.0 36.0 32.0 36.0 41 34.41101680475983 36.0 36.0 36.0 32.0 36.0 42 34.34269925719033 36.0 36.0 36.0 32.0 36.0 43 34.34200099503906 36.0 36.0 36.0 32.0 36.0 44 34.26808929577133 36.0 36.0 36.0 32.0 36.0 45 34.23309750205544 36.0 36.0 36.0 32.0 36.0 46 34.222711549578165 36.0 36.0 36.0 32.0 36.0 47 34.18803202216595 36.0 36.0 36.0 32.0 36.0 48 34.14504212187432 36.0 36.0 36.0 32.0 36.0 49 34.12437802314364 36.0 36.0 36.0 32.0 36.0 50 33.484304590996196 36.0 36.0 36.0 21.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 4.0 20 13.0 21 55.0 22 152.0 23 504.0 24 1331.0 25 3005.0 26 6161.0 27 11285.0 28 19276.0 29 29699.0 30 43376.0 31 62455.0 32 91171.0 33 148723.0 34 306343.0 35 890451.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.88447751853447 17.776173643103444 11.619787035631411 26.71956180273068 2 16.3500315674754 20.251759135515858 36.14454248226304 27.253666814745696 3 18.122603393678194 24.042178412528862 28.783625288955832 29.051592904837108 4 12.436749035165274 15.505694832798122 35.44563313542011 36.6119229966165 5 14.634818808096867 36.57989091744955 32.93858081160738 15.846709462846196 6 35.062905746089534 35.336139608253276 16.168877114154753 13.43207753150244 7 30.725393384291394 30.28097151995004 20.510877586032773 18.482757509725793 8 28.758921119920792 32.49911555526091 18.96038864763288 19.781574677185414 9 27.723247698873354 13.51264442450768 18.069482376616488 40.69462550000248 10 15.840338243120916 26.587264953187358 31.316485200934085 26.255911602757642 11 38.00472984317912 20.605858586734755 22.10163896439111 19.287772605695018 12 24.88873963991482 23.268424486386984 28.56802975451779 23.2748061191804 13 29.684857106390467 19.073877414965818 25.135409089726256 26.10585638891746 14 23.89668935555382 18.997017359291103 24.863042640485848 32.243250644669224 15 25.513494289138023 26.765398013063667 21.86757640609142 25.853531291706886 16 26.218681807536313 25.4872063038492 23.114402867909376 25.179709020705104 17 24.48558153713088 25.59276384798827 24.782730186424224 25.138924428456633 18 25.321715036994906 24.541792285778367 25.696682664128883 24.439810013097844 19 26.077040605797002 24.42568367156008 25.091976114091274 24.40529960855164 20 26.27765582335961 23.852549363658163 24.53402776099743 25.3357670519848 21 27.205272343924157 23.77914098265993 24.094133420734853 24.92145325268106 22 26.222673549755765 23.8982679101167 24.597956386725187 25.281102153402347 23 24.88955968857381 23.65907184289409 25.26453010358155 26.18683836495055 24 25.32702932281866 24.55596316974174 24.81172540999096 25.305282097448632 25 25.394724694898862 23.958021602591863 24.966526701499962 25.680727001009313 26 25.197700766266667 24.671779241837775 25.150424832814828 24.98009515908073 27 25.73040279967086 24.366567032487684 24.380074651280374 25.522955516561087 28 25.009681258879652 24.159837119402606 25.37227151144743 25.45821011027031 29 25.23510408521617 24.3410951655735 25.038941340771736 25.384859408438594 30 24.975076659795324 24.5303290252666 25.306313892198578 25.188280422739506 31 25.491822883039404 24.28096269023864 24.48711005803355 25.740104368688403 32 25.36020322810496 24.37355556243998 24.338796121317266 25.927445088137794 33 24.9238193077006 24.141503389870415 24.87127662606588 26.063400676363102 34 25.644255481562073 24.05840060075987 24.99485735670613 25.30248656097192 35 26.120320355300446 24.04907686569291 24.975061308906426 24.855541470100214 36 25.277203766067597 24.694572413771738 24.50032065481741 25.527903165343258 37 25.92705726505947 24.433021820365056 24.518650194460676 25.121270720114797 38 25.311126959627384 24.266446742685844 24.938549133739514 25.483877163947255 39 25.88449749339969 24.202649542516784 24.378864380871892 25.53398858321163 40 25.955608867817325 24.41698146992728 24.730803713325706 24.89660594892969 41 25.072678201000762 24.740700536071436 25.002354451524322 25.18426681140348 42 26.23737899448319 24.839650651558635 24.40903706126981 24.513933292688368 43 25.566964830615323 23.96274076217372 24.781643493233226 25.688650913977728 44 25.25749881659591 24.428620287139683 24.56771673643175 25.746164159832663 45 25.300622558835776 24.760530463746854 24.484753256537857 25.454093720879513 46 25.254322664348607 24.54260954043791 24.575633227653405 25.62743456756008 47 25.47510000148701 24.386855814460688 24.850369522223378 25.287674661828923 48 26.255115475766356 24.968292569587508 23.92701250019362 24.849579454452517 49 25.379817459614284 24.910176524272938 24.179506926584217 25.530499089528558 50 25.51691962249936 24.967162004084305 24.072357594622996 25.443560778793344 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 25.0 1 27.5 2 30.0 3 101.5 4 173.0 5 218.0 6 263.0 7 264.0 8 265.0 9 343.5 10 422.0 11 646.5 12 871.0 13 1610.5 14 2350.0 15 3087.5 16 3825.0 17 3978.0 18 4131.0 19 3971.0 20 3811.0 21 4295.0 22 4779.0 23 5573.5 24 6368.0 25 7055.5 26 7743.0 27 9435.5 28 11128.0 29 13119.0 30 15110.0 31 17340.0 32 19570.0 33 22942.0 34 26314.0 35 30583.0 36 34852.0 37 42906.5 38 50961.0 39 57361.0 40 63761.0 41 70904.5 42 78048.0 43 81334.5 44 84621.0 45 94376.0 46 104131.0 47 112255.5 48 120380.0 49 125073.0 50 129766.0 51 128150.0 52 126534.0 53 125270.5 54 124007.0 55 125042.0 56 126077.0 57 122598.5 58 119120.0 59 108532.5 60 97945.0 61 86472.5 62 75000.0 63 65007.0 64 55014.0 65 46440.0 66 37866.0 67 32023.0 68 26180.0 69 23386.0 70 20592.0 71 16066.5 72 11541.0 73 9758.0 74 7975.0 75 6168.0 76 4361.0 77 3760.5 78 3160.0 79 2614.5 80 2069.0 81 1671.5 82 1274.0 83 1065.5 84 857.0 85 618.0 86 379.0 87 266.0 88 153.0 89 112.0 90 71.0 91 60.5 92 50.0 93 40.0 94 30.0 95 26.5 96 23.0 97 19.5 98 16.0 99 15.5 100 15.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.007558827192199291 2 2.47830399744239E-4 3 3.7174559961635856E-4 4 0.0 5 0.0 6 3.097879996802988E-4 7 0.0 8 0.0 9 9.293639990408964E-4 10 0.0012391519987211951 11 0.0 12 0.0 13 5.576183994245378E-4 14 6.195759993605975E-5 15 0.004027243995843885 16 5.576183994245378E-4 17 0.0 18 6.195759993605975E-5 19 6.195759993605975E-5 20 9.91321598976956E-4 21 0.0 22 1.8587279980817928E-4 23 8.054487991687769E-4 24 4.95660799488478E-4 25 0.002106558397826032 26 0.004832692795012661 27 0.0063816327934141555 28 0.003965286395907824 29 0.00254026159737845 30 0.003593540796291466 31 0.007001208792774753 32 0.0035315831963554064 33 0.00501856559482084 34 0.003159837596739048 35 0.003035922396866928 36 0.007558827192199291 37 0.0034696255964193467 38 0.007187081592582932 39 0.004213116795652064 40 0.002230473597698151 41 0.0026641767972505697 42 0.0019206855980178526 43 0.0011152367988490756 44 0.0011771943987851355 45 0.0014250247985293743 46 8.674063991048367E-4 47 0.0019206855980178526 48 0.001982643197953912 49 4.95660799488478E-4 50 0.0014250247985293743 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1614007.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.35513917205763 #Duplication Level Percentage of deduplicated Percentage of total 1 77.0688255590818 41.120179135318416 2 13.008550368840474 13.881460307124103 3 4.100487624060879 6.5634626356520425 4 1.8347806833228355 3.9157991483557155 5 0.9739968255651252 2.5983868090584794 6 0.6349598781446212 2.032702360024741 7 0.44520634367286377 1.6627832498863997 8 0.3075601148382288 1.312793018477418 9 0.23799089811993157 1.1428233741784743 >10 1.2314769536772787 11.684080171618831 >50 0.08562111072842675 3.146108746390304 >100 0.06024891647071236 6.598077667055799 >500 0.008071999089743345 2.8104850722448473 >1k 0.002222724387030776 1.5308583046145008 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 1646 0.10198220949475437 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 1631 0.10105284549571346 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.239151998721195E-4 2 0.0 0.0 0.0 0.0 1.239151998721195E-4 3 0.0 0.0 0.0 0.0 1.8587279980817928E-4 4 0.0 0.0 0.0 0.0 1.8587279980817928E-4 5 0.0 0.0 0.0 0.0 2.47830399744239E-4 6 0.0 0.0 0.0 0.0 2.47830399744239E-4 7 0.0 0.0 0.0 0.0 2.47830399744239E-4 8 0.0 0.0 0.0 0.0 2.47830399744239E-4 9 0.0 0.0 0.0 0.0 2.47830399744239E-4 10 0.0 0.0 0.0 6.195759993605975E-5 3.097879996802988E-4 11 0.0 0.0 0.0 6.195759993605975E-5 3.097879996802988E-4 12 0.0 0.0 0.0 6.195759993605975E-5 6.195759993605976E-4 13 0.0 0.0 0.0 6.195759993605975E-5 6.815335992966573E-4 14 0.0 0.0 0.0 6.195759993605975E-5 6.815335992966573E-4 15 0.0 0.0 0.0 6.195759993605975E-5 0.0012391519987211951 16 0.0 0.0 0.0 6.195759993605975E-5 0.0013011095986572548 17 0.0 0.0 0.0 6.195759993605975E-5 0.0013011095986572548 18 0.0 0.0 0.0 6.195759993605975E-5 0.0013011095986572548 19 0.0 0.0 0.0 6.195759993605975E-5 0.0013011095986572548 20 0.0 0.0 0.0 6.195759993605975E-5 0.0013630671985933147 21 0.0 0.0 0.0 6.195759993605975E-5 0.0013630671985933147 22 0.0 0.0 0.0 6.195759993605975E-5 0.001548939998401494 23 0.0 0.0 0.0 1.239151998721195E-4 0.001548939998401494 24 0.0 0.0 0.0 3.7174559961635856E-4 0.0016108975983375536 25 0.0 0.0 0.0 4.337031995524183E-4 0.0016108975983375536 26 0.0 0.0 0.0 4.95660799488478E-4 0.0016728551982736135 27 0.0 0.0 0.0 7.434911992327171E-4 0.0017348127982096731 28 0.0 0.0 0.0 0.0014869823984654342 0.001796770398145733 29 0.0 0.0 0.0 0.004398989595460243 0.001796770398145733 30 0.0 0.0 0.0 0.009479512790217142 0.001796770398145733 31 0.0 0.0 0.0 0.01976447437960306 0.001796770398145733 32 0.0 0.0 0.0 0.03320927356572803 0.001796770398145733 33 0.0 0.0 0.0 0.04485730235370727 0.0019206855980178526 34 0.0 0.0 0.0 0.05774448314040769 0.0019206855980178526 35 0.0 0.0 0.0 0.0742252047233996 0.0019206855980178526 36 0.0 0.0 0.0 0.09919411749763167 0.0019206855980178526 37 0.0 1.239151998721195E-4 0.0 0.13742195665818055 0.0019206855980178526 38 0.0 1.239151998721195E-4 0.0 0.19200660220184917 0.0019206855980178526 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATACCG 60 9.761376E-6 25.664717 5 GTATCAA 2615 0.0 22.295525 1 ATACCGT 385 0.0 18.85571 6 CGTTTAT 560 0.0 18.074533 31 GGTATCA 1400 0.0 17.443693 1 AACGCAG 3360 0.0 17.415342 6 TCGTTTA 560 0.0 17.288149 30 TACACCG 115 4.2777738E-6 17.216084 5 TTATACT 205 5.456968E-12 17.169426 4 CATCGTT 570 0.0 16.984324 28 TAATAGT 160 2.1325832E-8 16.498745 4 TACCGTC 400 0.0 16.498745 7 GTCTAGA 215 1.2732926E-11 16.372877 1 GTATAGT 135 1.0854546E-6 16.297077 1 ATCGTTT 595 0.0 16.270695 29 TGGTCGG 615 0.0 16.097834 37 GTATTAG 330 0.0 16.000767 1 GTATAGG 220 1.8189894E-11 16.000767 1 TACTATA 110 5.628266E-5 15.998287 2 TCAACGC 3680 0.0 15.781409 4 >>END_MODULE