Basic Statistics
Measure | Value |
---|---|
Filename | SRR4064170_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 772146 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTT | 2619 | 0.33918455836072453 | No Hit |
TATCAACGCAGAGTACTTTTTTTTT | 1907 | 0.2469740178670873 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTT | 1607 | 0.20812126204111658 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTT | 1022 | 0.13235838818047363 | No Hit |
GGTATCAACGCAGAGTACTTTTTTT | 993 | 0.12860262178396314 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTT | 916 | 0.11863041445529732 | No Hit |
GTACATGGGGTGGTATCAACGCAAA | 811 | 0.10503194991620754 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATAGG | 55 | 1.1280788E-5 | 15.543652 | 1 |
CGTTATT | 70 | 4.4562148E-7 | 14.920069 | 2 |
ACGAACG | 80 | 1.2802411E-7 | 14.254816 | 15 |
CCGACTT | 40 | 0.005270897 | 14.252043 | 12 |
CGACTTT | 40 | 0.005270897 | 14.252043 | 13 |
GGATAAG | 40 | 0.0052799745 | 14.248347 | 1 |
ATTCCGA | 80 | 1.2883902E-7 | 14.247423 | 6 |
TCTAGAT | 110 | 1.8735591E-10 | 13.810312 | 2 |
TTCCGAT | 90 | 3.6317942E-8 | 13.72152 | 7 |
CGAACGA | 85 | 2.684119E-7 | 13.415427 | 16 |
CCGATAA | 85 | 2.6904854E-7 | 13.412818 | 9 |
CGATAAC | 85 | 2.6904854E-7 | 13.412818 | 10 |
GCGTTAT | 85 | 2.69687E-7 | 13.410209 | 1 |
GCGCCGA | 50 | 0.0014945427 | 13.304494 | 19 |
CAGCGCA | 50 | 0.0014974674 | 13.3010435 | 9 |
ACTTAAC | 50 | 0.001499664 | 13.298457 | 1 |
CGACCAT | 65 | 5.4415344E-5 | 13.154879 | 10 |
TCAATAC | 65 | 5.4747332E-5 | 13.146355 | 3 |
TTGCGCG | 75 | 1.47117735E-5 | 12.670947 | 18 |
ACGCCCC | 60 | 4.078467E-4 | 12.670125 | 17 |