FastQCFastQC Report
Thu 2 Feb 2017
SRR4064167_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4064167_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2932
Sequences flagged as poor quality0
Sequence length25
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTT290.9890859481582538No Hit
TATCAACGCAGAGTACTTTTTTTTT190.6480218281036835No Hit
GAGTACTTTTTTTTTTTTTTTTTTT100.34106412005457026No Hit
GGTATCAACGCAGAGTACTTTTTTT80.2728512960436562No Hit
GTACTTTTTTTTTTTTTTTTTTTTT60.20463847203274216No Hit
GGTTAATTCCGATAACGAACGAGAC60.20463847203274216No Hit
ACGCAGAGTACTTTTTTTTTTTTTT60.20463847203274216No Hit
GGGGGGGGGGGGGGGGGGGGGGGGG50.17053206002728513No Hit
TCGTAGTTCCGACCATAAACGATGC50.17053206002728513No Hit
TTCGTATTGCGCCGCTAGAGGTGAA40.1364256480218281No Hit
GAACGAGACTCTGGCATGCTAACTA40.1364256480218281No Hit
ATACAGGACTCTTTCGAGGCCCTGT40.1364256480218281No Hit
CTCCCGACCCGGGGAGGTAGTGACG40.1364256480218281No Hit
TATCTAGAGTCACCAAAGCCGCCGG40.1364256480218281No Hit
GCTTTGAACACTCTAATTTTTTCAA40.1364256480218281No Hit
CTCCACTCCTGGTGGTGCCCTTCCG40.1364256480218281No Hit
CTTTAATATACGCTATTGGAGCTGG40.1364256480218281No Hit
CTCAGCTAAGAGCATCGAGGGGGCG30.10231923601637108No Hit
GAATAACGCCGCCGCATCGCCAGTC30.10231923601637108No Hit
ATCAGATACCGTCGTAGTTCCGACC30.10231923601637108No Hit
GGACTCTTTCGAGGCCCTGTAATTG30.10231923601637108No Hit
CTCCTGCCCCTCCCAAAGCCGAAGC30.10231923601637108No Hit
GATTAAGAGGGACGGCCGGGGGCAT30.10231923601637108No Hit
TGTCAATCCTGTCCGTGTCCGGGCC30.10231923601637108No Hit
CTCCTGGTGGTGCCCTTCCGTCAAT30.10231923601637108No Hit
TAGTTGGTGGAGCGATTTGTCTGGT30.10231923601637108No Hit
GCCTACCATGGTGACCACGGGTGAC30.10231923601637108No Hit
CCCCTTGCCTCTCGGCGCCCCCTCG30.10231923601637108No Hit
GCAGAGTACTTTTTTTTTTTTTTTT30.10231923601637108No Hit
GTACAGTGAAACTGCGAATGGCTCA30.10231923601637108No Hit
GTCAATCCTGTCCGTGTCCGGGCCG30.10231923601637108No Hit
GTCCTGTATTGTTATTTTTCGTCAC30.10231923601637108No Hit
TGTTTTCATTAATCAAGAACGAAAG30.10231923601637108No Hit
GAATAATGGAATAGGACCGCGGTTC30.10231923601637108No Hit
GTACATGGGTACCTGGTTGATCCTG30.10231923601637108No Hit
GTCCTATTCCATTATTCCTAGCTGC30.10231923601637108No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)