Basic Statistics
Measure | Value |
---|---|
Filename | SRR4064158_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1934941 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTT | 6755 | 0.3491062518185309 | No Hit |
TATCAACGCAGAGTACTTTTTTTTT | 4792 | 0.24765613008355292 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTT | 4119 | 0.21287470780762824 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTT | 2669 | 0.1379370223691575 | No Hit |
GGTATCAACGCAGAGTACTTTTTTT | 2488 | 0.1285827319799415 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTT | 2470 | 0.12765247105725705 | No Hit |
GTACATGGGGTGGTATCAACGCAAA | 2347 | 0.12129568808557988 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CAAGACG | 310 | 0.0 | 12.255096 | 4 |
CATACCG | 70 | 1.0936367E-4 | 12.211328 | 5 |
ACTGTCG | 55 | 0.003068536 | 12.091107 | 8 |
ATAAGAC | 110 | 3.8298822E-8 | 12.087668 | 3 |
AAGACGG | 325 | 0.0 | 11.397239 | 5 |
CGGTCCA | 355 | 0.0 | 11.239329 | 10 |
GGGTAGG | 330 | 0.0 | 11.228328 | 1 |
ACACCGT | 60 | 0.0058814795 | 11.082082 | 6 |
ATACCGT | 300 | 0.0 | 11.082082 | 6 |
TCCAACG | 165 | 8.0035534E-11 | 10.941553 | 18 |
CGAACGA | 140 | 8.338247E-9 | 10.858443 | 16 |
CTAGGAC | 185 | 5.456968E-12 | 10.780894 | 3 |
CGTCGTA | 240 | 0.0 | 10.687399 | 10 |
GTATCAA | 4175 | 0.0 | 10.650101 | 1 |
CGTTTAT | 125 | 2.2377026E-7 | 10.641 | 1 |
TGAGTTA | 520 | 0.0 | 10.596874 | 12 |
ACCGTCC | 90 | 9.5153424E-5 | 10.555727 | 8 |
TACCGTC | 270 | 0.0 | 10.555455 | 7 |
CGCAAGA | 325 | 0.0 | 10.520256 | 2 |
CCGTCGT | 235 | 0.0 | 10.51081 | 9 |