Basic Statistics
Measure | Value |
---|---|
Filename | SRR4064116_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6194400 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 51 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTT | 8268 | 0.13347539713289425 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGC | 7188 | 0.1160402944595118 | No Hit |
GTTCAAAGCAGGCCCGAGCCGCCTG | 7073 | 0.11418377889706832 | No Hit |
GGGTAGGCACACGCTGAGCCAGTCA | 6808 | 0.10990572129665505 | No Hit |
GTCTTGCGCCGGTCCAAGAATTTCA | 6655 | 0.10743574841792587 | No Hit |
GAATAGGACCGCGGTTCTATTTTGT | 6241 | 0.10075229239312929 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 6510 | 0.0 | 12.795871 | 1 |
GGTATCA | 2575 | 0.0 | 12.65226 | 1 |
GCGTTAT | 655 | 0.0 | 12.471204 | 1 |
AAGACGG | 1405 | 0.0 | 12.169675 | 5 |
CCGGTTA | 55 | 0.0030682993 | 12.091921 | 14 |
CGATCCG | 95 | 1.0408821E-6 | 12.00052 | 10 |
CGCCAGT | 905 | 0.0 | 11.968433 | 18 |
CGAACGA | 510 | 0.0 | 11.736562 | 16 |
CAAGACG | 1485 | 0.0 | 11.641157 | 4 |
CGGTCCA | 1285 | 0.0 | 11.607508 | 10 |
ACCGTCG | 1085 | 0.0 | 11.383349 | 8 |
CGTTATT | 680 | 0.0 | 11.172713 | 2 |
TCGGCGT | 895 | 0.0 | 11.039674 | 13 |
ACTCTAA | 915 | 0.0 | 11.005942 | 10 |
ACGGTAT | 1045 | 0.0 | 11.000655 | 9 |
ATCGCCA | 985 | 0.0 | 10.996112 | 16 |
CGCATCG | 970 | 0.0 | 10.969637 | 13 |
ATCCCGA | 460 | 0.0 | 10.946835 | 16 |
CGAGCCG | 1420 | 0.0 | 10.906108 | 15 |
CGACCAT | 1165 | 0.0 | 10.845964 | 10 |