##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064116_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6194400 Sequences flagged as poor quality 0 Sequence length 50 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.345634928322355 32.0 32.0 32.0 32.0 32.0 2 31.411229174738473 32.0 32.0 32.0 32.0 32.0 3 31.490512075422963 32.0 32.0 32.0 32.0 32.0 4 31.574713773731112 32.0 32.0 32.0 32.0 32.0 5 31.519911532997547 32.0 32.0 32.0 32.0 32.0 6 35.12026992121917 36.0 36.0 36.0 36.0 36.0 7 35.13372998191915 36.0 36.0 36.0 36.0 36.0 8 35.07937524215421 36.0 36.0 36.0 36.0 36.0 9 35.18926885574067 36.0 36.0 36.0 36.0 36.0 10 35.04708301046106 36.0 36.0 36.0 36.0 36.0 11 35.184793846054504 36.0 36.0 36.0 36.0 36.0 12 35.09122126436782 36.0 36.0 36.0 36.0 36.0 13 35.134974815962806 36.0 36.0 36.0 36.0 36.0 14 35.07924367170347 36.0 36.0 36.0 36.0 36.0 15 35.0509587692109 36.0 36.0 36.0 36.0 36.0 16 35.0633885444918 36.0 36.0 36.0 36.0 36.0 17 35.02457623014335 36.0 36.0 36.0 36.0 36.0 18 35.0255482371174 36.0 36.0 36.0 36.0 36.0 19 35.027581040940206 36.0 36.0 36.0 36.0 36.0 20 35.02080023892548 36.0 36.0 36.0 36.0 36.0 21 35.01457542296268 36.0 36.0 36.0 36.0 36.0 22 34.99988279736536 36.0 36.0 36.0 36.0 36.0 23 34.94291069352964 36.0 36.0 36.0 36.0 36.0 24 34.91306631796461 36.0 36.0 36.0 32.0 36.0 25 34.88596361229498 36.0 36.0 36.0 32.0 36.0 26 34.82637139997417 36.0 36.0 36.0 32.0 36.0 27 34.82418297171639 36.0 36.0 36.0 32.0 36.0 28 34.80202876791941 36.0 36.0 36.0 32.0 36.0 29 34.77319740410694 36.0 36.0 36.0 32.0 36.0 30 34.759558310732274 36.0 36.0 36.0 32.0 36.0 31 34.75544346506522 36.0 36.0 36.0 32.0 36.0 32 34.72175690946661 36.0 36.0 36.0 32.0 36.0 33 34.69949841792587 36.0 36.0 36.0 32.0 36.0 34 34.69339661629859 36.0 36.0 36.0 32.0 36.0 35 34.656208672349216 36.0 36.0 36.0 32.0 36.0 36 34.63755956993413 36.0 36.0 36.0 32.0 36.0 37 34.63557342115459 36.0 36.0 36.0 32.0 36.0 38 34.594546203022084 36.0 36.0 36.0 32.0 36.0 39 34.602338402427996 36.0 36.0 36.0 32.0 36.0 40 34.57986455508201 36.0 36.0 36.0 32.0 36.0 41 34.572232338886735 36.0 36.0 36.0 32.0 36.0 42 34.504353609712 36.0 36.0 36.0 32.0 36.0 43 34.49807810280253 36.0 36.0 36.0 32.0 36.0 44 34.443461352189075 36.0 36.0 36.0 32.0 36.0 45 34.424769630634124 36.0 36.0 36.0 32.0 36.0 46 34.41307471264368 36.0 36.0 36.0 32.0 36.0 47 34.39423204830169 36.0 36.0 36.0 32.0 36.0 48 34.3543792780576 36.0 36.0 36.0 32.0 36.0 49 34.343082300142065 36.0 36.0 36.0 32.0 36.0 50 33.735129310344824 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 0.0 16 1.0 17 7.0 18 5.0 19 17.0 20 53.0 21 233.0 22 695.0 23 1877.0 24 5017.0 25 11232.0 26 22429.0 27 40811.0 28 67431.0 29 102287.0 30 148327.0 31 211596.0 32 307518.0 33 499498.0 34 1057930.0 35 3717435.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.06861945762504 17.586129511920657 11.55745922985145 26.787791800602857 2 16.42888911310665 19.725735041872667 36.26934113611139 27.57603470890929 3 18.34161557463881 23.26606480908979 28.475837283420546 29.91648233285085 4 12.28608097636575 15.757829652589436 35.37049593180937 36.58559343923544 5 14.645954410435232 36.38951310861423 33.15925674803048 15.805275732920057 6 35.396583293323985 35.24076478282109 16.1607623419012 13.201889581953724 7 31.23304314640422 30.117938821496455 20.056186250867317 18.59283178123201 8 28.785919540229887 32.566656980498514 18.631925610228596 20.015497869043006 9 27.33517889447788 13.963449107101633 17.91853894582813 40.78283305259236 10 15.760022368793209 26.511136611076168 31.17469743365883 26.55414358647179 11 37.99556276422064 20.658346567066978 22.02007717619649 19.326013492515898 12 25.195043449805944 23.25076775126651 28.075020797047134 23.479168001880414 13 29.558444342703343 18.99550107742964 25.061991756387897 26.38406282347912 14 23.954638287856408 19.183625433799985 24.54391370768407 32.31782257065953 15 25.62473311403951 26.90024821907856 21.53145117349101 25.943567493390912 16 26.550087216646794 25.574213254185874 22.798052094289226 25.077647434878102 17 24.627147100607 25.754778509621595 24.41929807568126 25.198776314090143 18 25.57414497161542 24.65232625999191 25.136845707846707 24.636683060545963 19 26.03066092449001 24.64560322962728 24.723883624545334 24.599852221337372 20 26.28246284396864 24.02172560127768 24.131067161031076 25.564744393722606 21 27.310829135993803 24.009799173446986 23.809795944724264 24.86957574583495 22 26.491635257885637 23.841189927729804 24.386360374616206 25.28081443976835 23 24.952246790138368 23.751361725237263 24.952166071392824 26.34422541323155 24 25.28705089071176 24.570271207476722 24.594728892614135 25.547949009197378 25 25.465060695326457 24.007252475219552 24.756376790981513 25.77131003847247 26 25.29256389570943 24.87942994941813 24.87516784071079 24.952838314161646 27 25.845523757584154 24.422856890077995 24.267141706951616 25.464477645386236 28 25.25169341424633 24.1996673308963 25.054991465324584 25.49364778953279 29 25.080929973052402 24.432182523000385 25.035872012791234 25.45101549115598 30 24.989942139047102 24.531332739225334 25.215121985870564 25.263603135857 31 25.613244558390942 24.460666393281176 24.201655166178554 25.724433882149327 32 25.533604188952307 24.306003779666067 24.04222467541399 26.118167355967632 33 24.97732124467015 24.160627743427117 24.602982536833707 26.259068475069032 34 25.744742679465695 24.158764138180434 24.9768978176429 25.11959536471097 35 26.260802798992867 23.96789398130001 24.91387142998288 24.85743178972424 36 25.094282079841935 24.597826931053117 24.460660006041415 25.847230983063536 37 26.136634419108052 24.398240020767936 24.41606324921329 25.04906231091072 38 25.306942279013427 24.102599372900862 24.785737361349852 25.80472098673586 39 25.93789003579672 24.180843096454183 24.206835392725033 25.67443147502407 40 26.10294681500431 24.307264466528377 24.553702814886137 25.036085903581178 41 24.9198323012662 24.831669223627316 25.06380562600225 25.184692849104234 42 26.410464087011732 24.625546329676794 24.574660764242427 24.389328819069043 43 25.587983544887837 23.6608265720163 24.77941838843609 25.971771494659773 44 25.084859973375618 24.401201616577247 24.594878987563128 25.919059422484008 45 25.31076877576152 24.551944072598168 24.661237818671182 25.47604933296913 46 25.125606561600893 24.36788281951497 24.758255194821338 25.748255424062798 47 25.299167376327336 24.263953408590996 25.082338126737998 25.354541088343673 48 26.215855988381538 24.84869100159857 24.002942715841943 24.93251029417795 49 25.242385541573498 24.869288500342325 24.36457187635153 25.523754081732648 50 25.37767389013672 24.856016798672457 24.331744399164457 25.434564912026364 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 30.0 1 53.0 2 76.0 3 232.5 4 389.0 5 474.0 6 559.0 7 512.5 8 466.0 9 652.5 10 839.0 11 1313.0 12 1787.0 13 3386.5 14 4986.0 15 6500.5 16 8015.0 17 8249.5 18 8484.0 19 8642.0 20 8800.0 21 10687.0 22 12574.0 23 15190.0 24 17806.0 25 23415.0 26 29024.0 27 36914.0 28 44804.0 29 53213.0 30 61622.0 31 69868.0 32 78114.0 33 90829.0 34 103544.0 35 121601.0 36 139658.0 37 170477.0 38 201296.0 39 225124.0 40 248952.0 41 278099.0 42 307246.0 43 320359.5 44 333473.0 45 368361.0 46 403249.0 47 435132.5 48 467016.0 49 483551.5 50 500087.0 51 488198.0 52 476309.0 53 471042.0 54 465775.0 55 471218.0 56 476661.0 57 465357.5 58 454054.0 59 414052.0 60 374050.0 61 329605.5 62 285161.0 63 248619.5 64 212078.0 65 181009.5 66 149941.0 67 128097.5 68 106254.0 69 95681.5 70 85109.0 71 64967.0 72 44825.0 73 38682.5 74 32540.0 75 24686.0 76 16832.0 77 14730.0 78 12628.0 79 10420.0 80 8212.0 81 6669.0 82 5126.0 83 4121.0 84 3116.0 85 2204.5 86 1293.0 87 931.0 88 569.0 89 434.0 90 299.0 91 264.0 92 229.0 93 179.5 94 130.0 95 138.5 96 147.0 97 102.5 98 58.0 99 83.0 100 108.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.008556115200826553 2 4.035903396616298E-4 3 3.5515949890223427E-4 4 0.0 5 0.0 6 2.2601059021051272E-4 7 3.228722717293039E-5 8 0.0 9 0.001259201859744285 10 9.040423608420509E-4 11 4.8430840759395585E-5 12 1.7757974945111713E-4 13 4.5202118042102544E-4 14 2.0986697662404754E-4 15 0.0044394937362779285 16 8.878987472555857E-4 17 0.0 18 2.421542037969779E-4 19 1.6143613586465194E-5 20 7.910370657367944E-4 21 0.0 22 1.1300529510525636E-4 23 8.394679064961902E-4 24 4.5202118042102544E-4 25 0.0016305049722329847 26 0.00456864264496965 27 0.006441301820999613 28 0.004148908691721555 29 0.00251840371948857 30 0.0038744672607516463 31 0.007426062249773989 32 0.0032610099444659695 33 0.004471780963450859 34 0.002905850445563735 35 0.0027767015368720133 36 0.00786193981660855 37 0.003809892806405786 38 0.007797365362262688 39 0.004148908691721555 40 0.002469972878729175 41 0.0031802918765336434 42 0.0017596538809247061 43 0.0015174996771277283 44 0.001259201859744285 45 0.0013560635412630763 46 9.363295880149813E-4 47 0.002017951698308149 48 0.0019695208575487536 49 5.327392483533514E-4 50 0.0016305049722329847 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 6194400.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.809874178254795 #Duplication Level Percentage of deduplicated Percentage of total 1 65.4244054967041 23.428397290240948 2 15.880954920293302 11.37389995052479 3 6.833403546399812 7.341099636174519 4 3.5873664254783817 5.13852561310706 5 2.117322458666535 3.7910525419820846 6 1.3623528687310607 2.927141088938625 7 0.9077173426796812 2.275367068154542 8 0.6512504643589904 1.865695774978036 9 0.4630141975757939 1.4922432142141306 >10 2.472319347848527 15.83813161649099 >50 0.16852257317277225 4.151063941215233 >100 0.10514913457713806 7.607362861888116 >500 0.014063301678245176 3.573547039550335 >1k 0.011613537275810456 8.022019447880298 >5k 5.443845597901439E-4 1.1744529146603868 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 7067 0.11408691721554952 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 6702 0.10819449825648973 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 6518 0.10522407335658013 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 6322 0.10205992509363296 No Hit GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC 6308 0.10183391450342245 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 6243 0.10078457962030221 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 1.6143613586465194E-5 7 0.0 0.0 0.0 1.6143613586465194E-5 1.6143613586465194E-5 8 0.0 0.0 0.0 1.6143613586465194E-5 1.6143613586465194E-5 9 0.0 0.0 0.0 1.6143613586465194E-5 1.6143613586465194E-5 10 0.0 0.0 0.0 1.6143613586465194E-5 1.6143613586465194E-5 11 0.0 0.0 0.0 3.228722717293039E-5 1.6143613586465194E-5 12 1.6143613586465194E-5 0.0 0.0 3.228722717293039E-5 1.4529252227818675E-4 13 1.6143613586465194E-5 0.0 0.0 4.8430840759395585E-5 1.4529252227818675E-4 14 1.6143613586465194E-5 0.0 0.0 4.8430840759395585E-5 1.4529252227818675E-4 15 1.6143613586465194E-5 0.0 0.0 9.686168151879117E-5 1.7757974945111713E-4 16 1.6143613586465194E-5 0.0 0.0 9.686168151879117E-5 1.7757974945111713E-4 17 1.6143613586465194E-5 0.0 0.0 9.686168151879117E-5 1.9372336303758234E-4 18 1.6143613586465194E-5 0.0 0.0 1.1300529510525636E-4 2.0986697662404752E-4 19 1.6143613586465194E-5 0.0 0.0 1.6143613586465193E-4 2.0986697662404752E-4 20 1.6143613586465194E-5 0.0 1.6143613586465194E-5 1.7757974945111713E-4 2.2601059021051272E-4 21 1.6143613586465194E-5 0.0 1.6143613586465194E-5 1.7757974945111713E-4 2.582978173834431E-4 22 1.6143613586465194E-5 0.0 1.6143613586465194E-5 2.4215420379697792E-4 2.744414309699083E-4 23 1.6143613586465194E-5 0.0 1.6143613586465194E-5 3.7130311248869947E-4 2.744414309699083E-4 24 1.6143613586465194E-5 0.0 1.6143613586465194E-5 5.81170089112747E-4 2.744414309699083E-4 25 1.6143613586465194E-5 0.0 1.6143613586465194E-5 8.556115200826553E-4 2.744414309699083E-4 26 1.6143613586465194E-5 0.0 1.6143613586465194E-5 0.0010654784967067028 3.067286581428387E-4 27 1.6143613586465194E-5 0.0 1.6143613586465194E-5 0.0015982177450600543 3.2287227172930386E-4 28 1.6143613586465194E-5 0.0 1.6143613586465194E-5 0.002841275991217874 3.2287227172930386E-4 29 1.6143613586465194E-5 0.0 1.6143613586465194E-5 0.005795557277541005 3.3901588531576906E-4 30 1.6143613586465194E-5 0.0 1.6143613586465194E-5 0.011445822032803823 3.3901588531576906E-4 31 1.6143613586465194E-5 0.0 1.6143613586465194E-5 0.027524861164923156 3.5515949890223427E-4 32 1.6143613586465194E-5 0.0 1.6143613586465194E-5 0.0435070386155237 3.5515949890223427E-4 33 1.6143613586465194E-5 0.0 1.6143613586465194E-5 0.06111972103835723 3.7130311248869947E-4 34 3.228722717293039E-5 0.0 1.6143613586465194E-5 0.08129923802143872 3.7130311248869947E-4 35 3.228722717293039E-5 0.0 1.6143613586465194E-5 0.10472362133539971 3.7130311248869947E-4 36 3.228722717293039E-5 0.0 1.6143613586465194E-5 0.1402072839984502 3.7130311248869947E-4 37 3.228722717293039E-5 0.0 1.6143613586465194E-5 0.19340049076585303 3.7130311248869947E-4 38 4.8430840759395585E-5 0.0 1.6143613586465194E-5 0.27418313315252485 3.7130311248869947E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 7175 0.0 26.767748 1 GGTATCA 3480 0.0 23.580288 1 TACCGTC 1610 0.0 18.309242 7 ATACCGT 1655 0.0 17.944185 6 TCAACGC 10515 0.0 17.92914 4 CGCAATA 1975 0.0 17.824524 36 ATCAACG 10795 0.0 17.484333 3 ACCGTCG 1650 0.0 17.465551 8 CAACGCA 10790 0.0 17.451801 5 ATACGAA 2010 0.0 17.402857 40 AACGCAG 10885 0.0 17.339909 6 TAGCGGC 2075 0.0 17.283056 30 CTAGCGG 2085 0.0 17.199331 29 CGTCGTA 1710 0.0 17.110847 10 CAATACG 2085 0.0 17.094366 38 CGGATCG 510 0.0 16.824629 26 GCATATA 1230 0.0 16.812885 1 TATCAAC 11465 0.0 16.692818 2 TCTAGCG 2175 0.0 16.588919 28 TACGAAT 2135 0.0 16.28091 41 >>END_MODULE