##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064114_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4234812 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.298896621620983 32.0 32.0 32.0 32.0 32.0 2 31.42654006836667 32.0 32.0 32.0 32.0 32.0 3 31.50042929886852 32.0 32.0 32.0 32.0 32.0 4 31.584977089892067 32.0 32.0 32.0 32.0 32.0 5 31.544597729485986 32.0 32.0 32.0 32.0 32.0 6 35.1394109112754 36.0 36.0 36.0 36.0 36.0 7 35.15303276745225 36.0 36.0 36.0 36.0 36.0 8 35.10938974386584 36.0 36.0 36.0 36.0 36.0 9 35.20000061395878 36.0 36.0 36.0 36.0 36.0 10 35.071875681848454 36.0 36.0 36.0 36.0 36.0 11 35.20998618120474 36.0 36.0 36.0 36.0 36.0 12 35.119186164580626 36.0 36.0 36.0 36.0 36.0 13 35.15357801007459 36.0 36.0 36.0 36.0 36.0 14 35.10213204269753 36.0 36.0 36.0 36.0 36.0 15 35.08180127004457 36.0 36.0 36.0 36.0 36.0 16 35.09245558008242 36.0 36.0 36.0 36.0 36.0 17 35.063217918528615 36.0 36.0 36.0 36.0 36.0 18 35.05431764149152 36.0 36.0 36.0 36.0 36.0 19 35.05634181635454 36.0 36.0 36.0 36.0 36.0 20 35.04626486370587 36.0 36.0 36.0 36.0 36.0 21 35.04434081135125 36.0 36.0 36.0 36.0 36.0 22 35.02725079649345 36.0 36.0 36.0 36.0 36.0 23 34.977701253326 36.0 36.0 36.0 36.0 36.0 24 34.95630573446944 36.0 36.0 36.0 36.0 36.0 25 34.931243464881085 36.0 36.0 36.0 36.0 36.0 26 34.874462668000376 36.0 36.0 36.0 32.0 36.0 27 34.87061125735924 36.0 36.0 36.0 32.0 36.0 28 34.84236938971553 36.0 36.0 36.0 32.0 36.0 29 34.82032921414221 36.0 36.0 36.0 32.0 36.0 30 34.80229842552633 36.0 36.0 36.0 32.0 36.0 31 34.792582055590664 36.0 36.0 36.0 32.0 36.0 32 34.75024463895918 36.0 36.0 36.0 32.0 36.0 33 34.73170851504152 36.0 36.0 36.0 32.0 36.0 34 34.71839340211561 36.0 36.0 36.0 32.0 36.0 35 34.682932323796194 36.0 36.0 36.0 32.0 36.0 36 34.658782255268946 36.0 36.0 36.0 32.0 36.0 37 34.64244315922407 36.0 36.0 36.0 32.0 36.0 38 34.609445236293844 36.0 36.0 36.0 32.0 36.0 39 34.605054250342164 36.0 36.0 36.0 32.0 36.0 40 34.5831345051445 36.0 36.0 36.0 32.0 36.0 41 34.56684735945775 36.0 36.0 36.0 32.0 36.0 42 34.50601230940122 36.0 36.0 36.0 32.0 36.0 43 34.49416928071423 36.0 36.0 36.0 32.0 36.0 44 34.44246356154653 36.0 36.0 36.0 32.0 36.0 45 34.4031645324515 36.0 36.0 36.0 32.0 36.0 46 34.37895684625433 36.0 36.0 36.0 32.0 36.0 47 34.33544818518508 36.0 36.0 36.0 32.0 36.0 48 34.295331882501515 36.0 36.0 36.0 32.0 36.0 49 34.271246515783936 36.0 36.0 36.0 32.0 36.0 50 33.69379797733642 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 6.0 18 10.0 19 10.0 20 52.0 21 178.0 22 505.0 23 1468.0 24 3575.0 25 8149.0 26 16062.0 27 28735.0 28 47566.0 29 71252.0 30 101920.0 31 143163.0 32 203933.0 33 326805.0 34 685994.0 35 2595429.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.2920425624067 18.21508435233836 12.130314249271628 26.362558835983307 2 15.506374099897185 20.65951732244827 37.697677856349095 26.136430721305455 3 17.713799943326723 24.989255690941718 29.343321998677624 27.95362236705393 4 12.126890166552847 16.63448105842715 36.62138956817918 34.61723920684082 5 13.861465396811004 37.40813051441245 33.81160722128869 14.91879686748786 6 33.17876501987695 36.4361995416554 17.289792564238496 13.095242874229157 7 29.498048200048693 31.14423814627767 21.28610759068473 18.07160606298891 8 27.78567921921427 33.51460076966835 19.56488731138178 19.134832699735597 9 27.59343526772537 14.180270381958792 18.461656532262825 39.76463781805301 10 15.245826693857426 27.379561402597353 32.44703610961818 24.92757579392704 11 36.40740991746739 21.249330843808615 23.457079902739462 18.886179335984536 12 24.642752314332153 23.73201423347038 29.569234205950828 22.055999246246643 13 29.444128280268917 20.06907072133447 25.55293178646403 24.93386921193259 14 23.45040534372217 19.759322811154526 25.953569010680784 30.836702834442516 15 24.82493124533902 27.627684360020798 22.77024962322493 24.777134771415252 16 25.1019122884861 26.138238000703222 24.357597781602728 24.402251929207942 17 23.699989515473177 26.240834303860478 25.66992348184524 24.389252698821103 18 24.16284692614691 25.507444391103334 26.73420863658464 23.595500046165117 19 25.22797357426341 25.138075819676487 25.951854758099003 23.6820958479611 20 25.482551176163888 24.793968240174706 25.54959119520618 24.173889388455233 21 26.17939119847587 24.495420339793124 25.14456367838761 24.180624783343394 22 25.385046972613633 24.74043687458794 25.447434688892624 24.4270814639058 23 24.34786428001657 24.644597662498484 25.83986693045066 25.167671127034286 24 24.520312808825746 25.094721321548104 25.86895079355746 24.51601507606869 25 24.65810681155748 24.77613089290956 25.9676357093925 24.59812658614046 26 24.376024157301117 25.388261737471424 26.094636562454028 24.141077542773438 27 24.728117381123084 25.29561596656833 25.498872606946478 24.477394045362104 28 24.35432859076239 25.16989115678066 25.870118780349515 24.605661472107435 29 24.434683305051166 25.128356018103737 25.733380310226966 24.70358036661813 30 24.34841522425653 25.290833665317713 25.932069265913466 24.428681844512294 31 24.828621385746175 24.964789098270295 25.35584028656148 24.85074922942205 32 24.46102032083743 25.39247468750797 25.27860507600596 24.867899915648643 33 24.29176337900982 25.132567443207055 25.694244866797316 24.881424310985807 34 24.75632837784067 25.023643969636538 25.867789769983435 24.352237882539356 35 25.059904158069994 25.072585160487886 25.780690446340586 24.086820235101534 36 24.436672803581263 25.38965786622408 25.527455057097864 24.646214273096792 37 25.00895590765202 25.102848297432956 25.346151439262183 24.54204435565285 38 24.505570231391193 25.282974933840663 25.608587985190134 24.60286684957801 39 24.864279343326682 25.06120388219289 25.312985802494065 24.761530971986367 40 25.17230817985368 25.18565030088254 25.61271624567355 24.029325273590228 41 24.44239994370276 25.329860725733745 25.89023549909249 24.337503831471004 42 25.08295084204757 25.545199146960012 25.474687093909253 23.89716291708316 43 24.45352749193518 24.96385265627188 25.840881789743953 24.741738062048984 44 24.339318643312946 25.362116409512993 25.440727767850667 24.857837179323393 45 24.360856518974234 25.481814946694847 25.477375507377143 24.679953026953772 46 24.384286822122792 25.19238380226147 25.463827500186554 24.959501875429186 47 24.558407397498165 25.26664634265853 25.71005133976696 24.46489492007635 48 24.781456218629973 25.585331785814226 25.081758362683853 24.55145363287195 49 24.42764080545065 25.512368125319824 25.271223154262174 24.78876791496735 50 24.351149310338233 25.82315821191157 25.172754894790895 24.652937582959307 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 203.0 1 165.5 2 128.0 3 435.0 4 742.0 5 849.5 6 957.0 7 890.5 8 824.0 9 1162.5 10 1501.0 11 2199.5 12 2898.0 13 5214.0 14 7530.0 15 9948.5 16 12367.0 17 12853.5 18 13340.0 19 13521.5 20 13703.0 21 15478.0 22 17253.0 23 20176.5 24 23100.0 25 27360.5 26 31621.0 27 39027.0 28 46433.0 29 54721.0 30 63009.0 31 72063.5 32 81118.0 33 92983.5 34 104849.0 35 120197.5 36 135546.0 37 152664.5 38 169783.0 39 182985.0 40 196187.0 41 210955.5 42 225724.0 43 233171.5 44 240619.0 45 258041.0 46 275463.0 47 289958.5 48 304454.0 49 311839.5 50 319225.0 51 315789.5 52 312354.0 53 309032.0 54 305710.0 55 299146.5 56 292583.0 57 280680.0 58 268777.0 59 245646.0 60 222515.0 61 195364.0 62 168213.0 63 145162.0 64 122111.0 65 103276.0 66 84441.0 67 71163.5 68 57886.0 69 50564.0 70 43242.0 71 33812.5 72 24383.0 73 20675.5 74 16968.0 75 13292.0 76 9616.0 77 8285.0 78 6954.0 79 5709.5 80 4465.0 81 3600.5 82 2736.0 83 2184.5 84 1633.0 85 1197.0 86 761.0 87 537.5 88 314.0 89 249.0 90 184.0 91 136.0 92 88.0 93 89.5 94 91.0 95 95.0 96 99.0 97 83.5 98 68.0 99 55.5 100 43.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.008760719484123498 2 4.250483846744554E-4 3 2.8336558978297034E-4 4 0.0 5 0.0 6 1.6529659404006602E-4 7 7.084139744574259E-5 8 2.361379914858086E-5 9 0.0014640555472120132 10 9.445519659432342E-4 11 2.361379914858086E-5 12 1.1806899574290428E-4 13 5.195035812687788E-4 14 2.597517906343894E-4 15 0.004486621838230363 16 0.001015393363388977 17 0.0 18 3.0697938893155117E-4 19 2.361379914858086E-5 20 6.611863761602641E-4 21 0.0 22 9.445519659432344E-5 23 8.028691710517492E-4 24 4.958897821201979E-4 25 0.001959945329332211 26 0.00550201520161934 27 0.006234042975225347 28 0.004463008039081782 29 0.002503062709749571 30 0.00413241485100165 31 0.007745326120734522 32 0.0034003870773956432 33 0.00413241485100165 34 0.0027628145003839606 35 0.0030934076884640924 36 0.007745326120734522 37 0.0041796424492988125 38 0.00798146411222033 39 0.004604690833973267 40 0.0024322213123038282 41 0.0034476146756928054 42 0.0017710349361435642 43 0.0014404417480634324 44 0.001298758953171947 45 0.001015393363388977 46 0.0011334623591318814 47 0.001959945329332211 48 0.0018182625344407262 49 3.5420698722871287E-4 50 0.001298758953171947 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 4234812.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.71662103076844 #Duplication Level Percentage of deduplicated Percentage of total 1 71.94705445320811 35.05017386077001 2 14.965909745223872 14.58177106877511 3 5.397020190668414 7.8877376197259625 4 2.5048012817905776 4.8810181920949836 5 1.400904781196265 3.4123673662865004 6 0.8517608942091317 2.489694761520883 7 0.5308402850644001 1.8102521496743227 8 0.38687372144390014 1.5077744379476445 9 0.3066734844949863 1.344608633189474 >10 1.5466521885115487 13.603537095265605 >50 0.09515957622681417 3.210210565292209 >100 0.05667809170034005 5.633224598256953 >500 0.006349847785581093 2.0865431440251805 >1k 0.003321458476014558 2.501086507175298 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.4168279489148514E-4 2 0.0 0.0 0.0 0.0 1.4168279489148514E-4 3 0.0 0.0 0.0 0.0 1.4168279489148514E-4 4 0.0 0.0 0.0 0.0 1.4168279489148514E-4 5 0.0 0.0 0.0 0.0 1.65296594040066E-4 6 0.0 0.0 0.0 0.0 1.65296594040066E-4 7 0.0 0.0 0.0 0.0 1.65296594040066E-4 8 0.0 0.0 0.0 0.0 1.65296594040066E-4 9 0.0 0.0 0.0 2.361379914858086E-5 2.3613799148580858E-4 10 0.0 0.0 0.0 7.084139744574257E-5 2.5975179063438946E-4 11 0.0 0.0 0.0 9.445519659432344E-5 2.5975179063438946E-4 12 0.0 0.0 0.0 9.445519659432344E-5 5.903449787145215E-4 13 0.0 0.0 0.0 1.1806899574290429E-4 7.084139744574257E-4 14 0.0 0.0 0.0 1.1806899574290429E-4 7.556415727545875E-4 15 0.0 0.0 0.0 1.65296594040066E-4 9.91779564240396E-4 16 0.0 0.0 0.0 2.1252419233722773E-4 9.91779564240396E-4 17 0.0 0.0 0.0 2.3613799148580858E-4 9.91779564240396E-4 18 0.0 0.0 0.0 3.30593188080132E-4 0.0010862347608347194 19 2.361379914858086E-5 0.0 0.0 3.5420698722871287E-4 0.0010862347608347194 20 2.361379914858086E-5 0.0 0.0 4.2504838467445546E-4 0.0011098485599833003 21 2.361379914858086E-5 0.0 0.0 5.195035812687789E-4 0.0011334623591318811 22 2.361379914858086E-5 0.0 0.0 7.792553719031683E-4 0.0011334623591318811 23 2.361379914858086E-5 0.0 0.0 0.0013696003506176897 0.0011334623591318811 24 2.361379914858086E-5 0.0 0.0 0.0022905385174123434 0.001157076158280462 25 2.361379914858086E-5 0.0 0.0 0.0027628145003839606 0.001157076158280462 26 2.361379914858086E-5 0.0 0.0 0.003164249085909835 0.001180689957429043 27 2.361379914858086E-5 0.0 0.0 0.0038962768595158415 0.0012043037565776238 28 2.361379914858086E-5 0.0 0.0 0.006210429176076766 0.0012043037565776238 29 2.361379914858086E-5 0.0 0.0 0.011688830578547525 0.0012043037565776238 30 2.361379914858086E-5 0.0 0.0 0.021039895041385544 0.0012043037565776238 31 2.361379914858086E-5 0.0 0.0 0.047770715677579074 0.0012043037565776238 32 2.361379914858086E-5 0.0 0.0 0.07608366085672752 0.0012279175557262047 33 2.361379914858086E-5 0.0 0.0 0.10186992952697782 0.0012279175557262047 34 2.361379914858086E-5 0.0 0.0 0.1320247510397156 0.0013459865514691088 35 2.361379914858086E-5 0.0 0.0 0.16916925710043326 0.0013459865514691088 36 2.361379914858086E-5 0.0 0.0 0.21996253906903068 0.0013459865514691088 37 2.361379914858086E-5 0.0 0.0 0.29821866944742764 0.0013459865514691088 38 2.361379914858086E-5 0.0 0.0 0.4021666132994806 0.0014168279489148515 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 8250 0.0 21.679523 1 TAGGACG 1110 0.0 18.828192 4 AACGCAG 10190 0.0 17.357811 6 GTCCTAC 1235 0.0 16.74457 1 GGTATCA 4270 0.0 16.589798 1 TCAACGC 11295 0.0 15.601067 4 GTAGGAC 1625 0.0 15.5683365 3 ATCAACG 11445 0.0 15.396233 3 TATCAAC 11620 0.0 15.372248 2 CGTCGTA 805 0.0 15.304373 10 CAACGCA 11525 0.0 15.289903 5 TGGCGAG 1605 0.0 15.07666 18 AGGACGT 1315 0.0 14.889406 5 TGTAGGA 1960 0.0 14.815125 2 TCCTACA 1595 0.0 14.757425 2 ACGCAGA 11975 0.0 14.715333 7 ACCGTCG 755 0.0 14.569215 8 TTAGGAC 1135 0.0 14.536611 3 AATCACG 730 0.0 14.466972 34 CGCAGAG 12275 0.0 14.355692 8 >>END_MODULE