FastQCFastQC Report
Thu 2 Feb 2017
SRR4064113_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4064113_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1809
Sequences flagged as poor quality0
Sequence length50
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG80.44223327805417356No Hit
ATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATC40.22111663902708678No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT30.16583747927031509No Hit
GTATCAACGCAGAGTACATGGGTACCTGGTTGATCCTGCCAGTAGCATAT30.16583747927031509No Hit
CCATTGGGATGTCCTGATCCAACATCGAGGTCGTAAACCCTAATTGTCGA30.16583747927031509No Hit
GCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCG30.16583747927031509No Hit
TATCTAGAGTCACCAAAGCCGCCGGCGCCCGACCCCCGGCCGGAGCCGGG20.11055831951354339No Hit
TGATAGAACAATGTAGATAAGGGAAGTCGGCAAAATAGATCCGTAACTTC20.11055831951354339No Hit
TCATTGATCTTGCCTTGAAGTTTCTCATCTTCCACAGTTGCTTTCATGTT20.11055831951354339No Hit
GTATCAACGCAGAGTACATGGGGGGTTTGGTTCGTGGAGTCCCAGCGGCA20.11055831951354339No Hit
CCCTAAAGCTGCCTCAGCTAGTCCACAGTCAGCCGCAGCCAGAAGGCGCA20.11055831951354339No Hit
GTGTGTGGAACACCCTGTTTCACCTTTATAGCCCCTGCTGGGTAAGTGCC20.11055831951354339No Hit
CACTAAAGGTTACAAAACCTTCCCAGTGCTGCCCTTCGTCTTGTTTGTTT20.11055831951354339No Hit
GGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTA20.11055831951354339No Hit
GGATTGCTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACA20.11055831951354339No Hit
CCCTATACGTCCACTTTCGTGTTGCAGAGTGCTGTGTTTTTAATAAACAG20.11055831951354339No Hit
ATGTAGACCAGGGTGGTCTTGAACTCACAGAGATCCACCTGCCTCTGCCT20.11055831951354339No Hit
TATCAACGCAGAGTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATG20.11055831951354339No Hit
CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA20.11055831951354339No Hit
CTCCCGACGAGCCTTGAAAATCCGCTTGAAGAAATAGTTTTCACGCCAGT20.11055831951354339No Hit
TCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGT20.11055831951354339No Hit
AGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTA20.11055831951354339No Hit
AGGATAAAGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGC20.11055831951354339No Hit
CTTACCGCCTCGACCGTCAAGCGAACGTTCACGTGCCAATTGGTAAAGTT20.11055831951354339No Hit
GAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAG20.11055831951354339No Hit
GCAGAGTACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTGGCCAT20.11055831951354339No Hit
GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA20.11055831951354339No Hit
TTACCACCCATTTTGAGCTGCATTCCCAAACAACTCGACTCTTCGAGAGC20.11055831951354339No Hit
AAACGATGCCGACTGGCGATGCGGCGGCGTTATTCCCATGACCCGCCGGG20.11055831951354339No Hit
GCTGTAGACAGCCACTGAAGGTCACACGACCTCATCTGTCACTGGCATTG20.11055831951354339No Hit
GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAAC20.11055831951354339No Hit
GTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGT20.11055831951354339No Hit
AAATATATCTGGGTCAATAAGATATGTTGATTTTACTTTGACTTGTAAGT20.11055831951354339No Hit
ACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCG20.11055831951354339No Hit
GCACACAGGTGCCTGCCGTTTAGAAGCTGCCTCCTGGTCTCATGCTTAAA20.11055831951354339No Hit
AAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGA20.11055831951354339No Hit
CTATTAATGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGAGTT20.11055831951354339No Hit
GACCCCGAGCACATCAGCCGCAACAAGGAGAAATACGTGCTGCTGGAGGA20.11055831951354339No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)