FastQCFastQC Report
Thu 2 Feb 2017
SRR4064106_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4064106_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1786701
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG651.8154315E-523.6899285
AATCGAT654.930258E-420.30963138
GTCCTAC5550.019.026181
GTATCAA32950.018.6273961
CGTATTA600.00741655618.33200315
TAGGACG5050.018.295194
ACGACGG4700.018.2534856
CGACGGT4600.018.1720877
TACGACG4750.018.0613425
GTAGGAC6100.017.6703553
ACGGTAT4900.017.059519
GACGGTA4950.016.887198
TATGGCG5400.016.70249416
CTACGAC5150.016.6585184
TCCTACA6950.016.4587782
TGGCGAG5500.016.39835418
ATGGCGA5900.016.03228817
AGGACGT5100.015.959185
TGTAGGA6500.015.9060942
TTAGGAC4100.015.5594123
Produced by FastQC (version 0.11.5)