FastQCFastQC Report
Thu 2 Feb 2017
SRR4064096_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4064096_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1795143
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA24250.026.2185731
TTAGGAC11550.021.5208263
TAGGACG17800.020.6375894
TGTTACG654.938059E-420.3048762
GTAGGAC16950.020.2449823
GACGTGA10250.020.1728137
TACACCG1352.6047928E-919.5528435
AGGACGT18950.019.3851765
TAGGACA7150.019.3819274
GGTATCA11400.019.2982581
ATCGATT808.9877736E-519.25108529
TGTAGGA17650.019.1928082
GGACGTG19150.019.1827186
GTCCTAC16350.019.1070461
TTTAGGA14100.019.0328242
ATACCGT3950.018.9340846
TAGACTA1303.59596E-818.6128045
AAATTCG1557.221388E-1018.45162621
TCCTACA17900.018.4331992
CGTCGTA3700.018.43141710
Produced by FastQC (version 0.11.5)