##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064095_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1664294 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.2294540507867 32.0 32.0 32.0 32.0 32.0 2 31.195475078321497 32.0 32.0 32.0 32.0 32.0 3 31.35395549103704 32.0 32.0 32.0 32.0 32.0 4 31.47807538812253 32.0 32.0 32.0 32.0 32.0 5 31.382467881275783 32.0 32.0 32.0 32.0 32.0 6 34.97456879613818 36.0 36.0 36.0 36.0 36.0 7 35.003488566323014 36.0 36.0 36.0 36.0 36.0 8 34.9320877200783 36.0 36.0 36.0 36.0 36.0 9 35.09006762026421 36.0 36.0 36.0 36.0 36.0 10 34.90247696620909 36.0 36.0 36.0 32.0 36.0 11 35.09934062130849 36.0 36.0 36.0 36.0 36.0 12 34.98295793892185 36.0 36.0 36.0 36.0 36.0 13 35.03531767824675 36.0 36.0 36.0 36.0 36.0 14 34.97751779433201 36.0 36.0 36.0 36.0 36.0 15 34.93430006957905 36.0 36.0 36.0 32.0 36.0 16 34.95802544502354 36.0 36.0 36.0 36.0 36.0 17 34.92282192929855 36.0 36.0 36.0 32.0 36.0 18 34.925726464194426 36.0 36.0 36.0 32.0 36.0 19 34.91965602231337 36.0 36.0 36.0 32.0 36.0 20 34.91087151669116 36.0 36.0 36.0 32.0 36.0 21 34.903997130314714 36.0 36.0 36.0 32.0 36.0 22 34.887202621652186 36.0 36.0 36.0 32.0 36.0 23 34.83950612091373 36.0 36.0 36.0 32.0 36.0 24 34.809829272952975 36.0 36.0 36.0 32.0 36.0 25 34.77830479470574 36.0 36.0 36.0 32.0 36.0 26 34.716745358692634 36.0 36.0 36.0 32.0 36.0 27 34.709534493304666 36.0 36.0 36.0 32.0 36.0 28 34.6801923217893 36.0 36.0 36.0 32.0 36.0 29 34.64719755043279 36.0 36.0 36.0 32.0 36.0 30 34.62452247018856 36.0 36.0 36.0 32.0 36.0 31 34.6209624020756 36.0 36.0 36.0 32.0 36.0 32 34.568083523704345 36.0 36.0 36.0 32.0 36.0 33 34.55665104843255 36.0 36.0 36.0 32.0 36.0 34 34.532378293738965 36.0 36.0 36.0 32.0 36.0 35 34.4989941680977 36.0 36.0 36.0 32.0 36.0 36 34.45730321685952 36.0 36.0 36.0 32.0 36.0 37 34.43894227822729 36.0 36.0 36.0 32.0 36.0 38 34.3839748265631 36.0 36.0 36.0 32.0 36.0 39 34.362933472090866 36.0 36.0 36.0 32.0 36.0 40 34.348753886032156 36.0 36.0 36.0 32.0 36.0 41 34.331413800686654 36.0 36.0 36.0 32.0 36.0 42 34.257887128115584 36.0 36.0 36.0 32.0 36.0 43 34.25981286960116 36.0 36.0 36.0 32.0 36.0 44 34.16901581090841 36.0 36.0 36.0 32.0 36.0 45 34.137920944256244 36.0 36.0 36.0 32.0 36.0 46 34.091378686698384 36.0 36.0 36.0 32.0 36.0 47 34.0736822941139 36.0 36.0 36.0 32.0 36.0 48 34.00591902632588 36.0 36.0 36.0 32.0 36.0 49 33.98108086672187 36.0 36.0 36.0 32.0 36.0 50 33.33342246021436 36.0 36.0 36.0 21.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 2.0 19 3.0 20 16.0 21 42.0 22 135.0 23 415.0 24 1128.0 25 2619.0 26 5588.0 27 10723.0 28 18632.0 29 30234.0 30 45303.0 31 67496.0 32 102270.0 33 169658.0 34 345532.0 35 864496.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.93445458036161 19.449043030143155 12.6564829442379 25.96001944525733 2 14.654966775602073 21.36732262245319 39.20881529590113 24.7688953060436 3 17.681183977061675 25.84184597747146 29.768688010315515 26.70828203515135 4 11.540569154247986 16.899297840405602 38.02813685562767 33.53199614971874 5 13.181565276327378 38.25441899087541 34.13982144981596 14.42419428298125 6 32.44180254534814 37.78221476893164 17.278709071911102 12.497273613809124 7 28.517411608059163 31.445503553462974 21.857222170148027 18.179862668329836 8 26.49766207172531 35.360939833947604 19.840605085399574 18.30079300892751 9 27.222926897561166 13.982314284667071 19.221273330645484 39.57348548712627 10 15.17239597447303 27.75033513010739 32.845694742287805 24.231574153131778 11 36.173536646770344 21.20520773372974 24.360900177492677 18.260355442007242 12 24.48554700737611 24.058338320438963 30.46508665546671 20.991028016718218 13 29.439789459137106 20.414111765713205 25.86209693652229 24.284001838627397 14 22.507823165221406 21.080666326981866 26.309328673883364 30.10218183391336 15 23.737529420742607 29.641747440387885 22.868411991945763 23.75231114692375 16 23.873704171706375 26.54476432193323 26.077716349923662 23.503815156436737 17 22.5203599844739 27.23022494823631 26.62528375395213 23.624131313337667 18 23.23547985298244 25.86008095939953 28.759754153570498 22.14468503404753 19 25.15288765085976 25.1259693299381 26.259362828923255 23.46178019027888 20 25.131528032475224 25.55699628188458 26.279529214965713 23.031946470674477 21 25.83551944548259 24.942347926508177 25.273719667318396 23.948412960690842 22 25.045514904253462 25.930456831441635 25.890139338696983 23.133888925607916 23 23.211963823482048 25.777030843293574 26.841392454653175 24.169612878571208 24 24.500058282971636 25.676412941463468 26.60773877692283 23.215789998642066 25 23.901628292230956 25.741245803688006 26.88451737379819 23.472608530282844 26 22.82354821594137 26.841968957061336 27.507569653126918 22.82691317387038 27 23.743617815855398 26.23850575921327 26.4301891055358 23.58768731939553 28 23.005400091694 26.249841518394984 26.78678620936637 23.957972180544648 29 23.542630940442205 25.575319558551634 26.454394745017122 24.427654755989035 30 23.061503592055896 25.939654903054148 26.95544120156613 24.04340030332382 31 24.288979772353347 25.541745435229107 26.188679199931737 23.98059559248581 32 23.591329892738276 26.473293928124853 25.977934765692833 23.957441413444037 33 23.097537893013264 26.037464886058075 26.96606528564347 23.89893193528519 34 23.937814930137034 26.09367057271168 27.05572092788498 22.912793569266306 35 24.20757002562118 26.07201570919719 26.807062408967898 22.913351856213737 36 23.080172554175558 26.403204474534796 26.715131179270422 23.80149179201922 37 23.94872371095738 26.3387049576413 25.73626744716354 23.976303884237783 38 23.574451106440105 26.69078685659964 26.075824166579537 23.65893787038072 39 24.578483236671897 25.570775158211497 25.851986626832378 23.998754978284225 40 25.218671417541184 25.807102877864267 26.350348954937797 22.623876749656755 41 23.9643007790953 25.71879743161735 27.199895687996552 23.1170061012908 42 24.597224600649536 27.00687690962677 26.19024013603603 22.205658353687664 43 23.379259374981224 26.322772146346445 26.780510373917693 23.51745810475464 44 23.031331416979917 26.696417412538338 26.086721401309404 24.185529769172348 45 23.281004115315355 26.94819533597593 26.02238457558895 23.748415973119762 46 23.54454642411861 25.94096528518424 25.89079328836881 24.62369500232834 47 24.416135498384865 25.954360386863563 26.14056972004307 23.488934394708508 48 24.273374240206504 26.52235096751244 25.2502000879666 23.954074704314447 49 23.963626509578564 26.391450042630815 25.739940599258905 23.904982848531716 50 23.754212810549255 27.300334260867686 25.112586967611605 23.832865960971453 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 37.0 1 37.0 2 37.0 3 106.0 4 175.0 5 220.0 6 265.0 7 290.0 8 315.0 9 427.5 10 540.0 11 826.0 12 1112.0 13 2101.0 14 3090.0 15 4184.0 16 5278.0 17 5648.5 18 6019.0 19 6081.0 20 6143.0 21 6851.0 22 7559.0 23 8810.5 24 10062.0 25 12411.0 26 14760.0 27 19345.5 28 23931.0 29 28715.5 30 33500.0 31 38701.0 32 43902.0 33 52391.5 34 60881.0 35 70182.5 36 79484.0 37 85744.5 38 92005.0 39 91625.5 40 91246.0 41 93597.5 42 95949.0 43 93555.5 44 91162.0 45 97280.5 46 103399.0 47 108057.0 48 112715.0 49 114537.0 50 116359.0 51 112498.0 52 108637.0 53 104824.0 54 101011.0 55 101284.5 56 101558.0 57 98248.0 58 94938.0 59 85367.0 60 75796.0 61 65550.5 62 55305.0 63 47390.0 64 39475.0 65 33448.0 66 27421.0 67 23477.0 68 19533.0 69 17698.0 70 15863.0 71 12156.5 72 8450.0 73 7226.5 74 6003.0 75 4674.0 76 3345.0 77 3027.0 78 2709.0 79 2191.5 80 1674.0 81 1385.5 82 1097.0 83 909.0 84 721.0 85 544.0 86 367.0 87 260.5 88 154.0 89 135.0 90 116.0 91 86.0 92 56.0 93 55.0 94 54.0 95 50.0 96 46.0 97 31.0 98 16.0 99 20.0 100 24.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.008111547599162168 2 3.0042768885785805E-4 3 3.0042768885785805E-4 4 0.0 5 0.0 6 1.8025661331471483E-4 7 1.2017107554314322E-4 8 0.0 9 7.811119910304308E-4 10 9.012830665735741E-4 11 0.0 12 1.2017107554314322E-4 13 5.407698399441445E-4 14 3.6051322662942966E-4 15 0.004626586408411014 16 6.609409154872877E-4 17 0.0 18 1.8025661331471483E-4 19 0.0 20 6.008553777157161E-4 21 0.0 22 2.4034215108628644E-4 23 6.008553777157161E-4 24 0.0 25 0.002102993822005006 26 0.004987099635040444 27 0.005467783937213016 28 0.0037853888796090117 29 0.0027038491997207225 30 0.003965645492923726 31 0.00817163313693374 32 0.0028240202752638655 33 0.004145902106238442 34 0.002163079359776578 35 0.002763934737492294 36 0.007270350070360166 37 0.0033047045774364384 38 0.007690948834761166 39 0.003965645492923726 40 0.002343335973091293 41 0.00336479011520801 42 0.0017424805953755768 43 0.0014420529065177186 44 0.0013218818309745754 45 0.001381967368746147 46 0.0011416252176598605 47 0.002283250435319721 48 0.0015622239820608616 49 3.0042768885785805E-4 50 0.0015021384442892903 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1664294.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.2572757838934 #Duplication Level Percentage of deduplicated Percentage of total 1 76.55812477982143 40.772771648966724 2 13.764375620089917 14.661062967844549 3 4.365250032963543 6.974439746135674 4 1.801455268617469 3.8376240021243317 5 0.9476457456084103 2.5234515409650196 6 0.5587530412590451 1.7854598888053277 7 0.37301904086745674 1.3906184552485081 8 0.25979653105976336 1.1068844401878917 9 0.19189186002337158 0.9197673938954073 >10 0.9993064798514522 9.637209699114837 >50 0.09118167213338929 3.372096491582547 >100 0.0783056117899607 8.327744330671402 >500 0.008397701850999608 3.007922165725361 >1k 0.002496614063810694 1.6829472287325125 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 6.008553777157161E-5 6 0.0 0.0 0.0 0.0 6.008553777157161E-5 7 0.0 0.0 0.0 0.0 6.008553777157161E-5 8 0.0 0.0 0.0 0.0 6.008553777157161E-5 9 0.0 0.0 0.0 0.0 6.008553777157161E-5 10 0.0 0.0 0.0 0.0 6.008553777157161E-5 11 0.0 0.0 0.0 0.0 6.008553777157161E-5 12 0.0 0.0 0.0 0.0 1.2017107554314322E-4 13 0.0 0.0 0.0 0.0 1.2017107554314322E-4 14 0.0 0.0 0.0 0.0 1.8025661331471483E-4 15 0.0 0.0 0.0 6.008553777157161E-5 2.4034215108628644E-4 16 0.0 0.0 0.0 6.008553777157161E-5 3.6051322662942966E-4 17 0.0 0.0 0.0 6.008553777157161E-5 3.6051322662942966E-4 18 0.0 0.0 0.0 6.008553777157161E-5 4.2059876440100126E-4 19 0.0 0.0 0.0 6.008553777157161E-5 4.2059876440100126E-4 20 0.0 0.0 0.0 6.008553777157161E-5 4.2059876440100126E-4 21 0.0 0.0 0.0 6.008553777157161E-5 4.2059876440100126E-4 22 0.0 0.0 0.0 6.008553777157161E-5 4.806843021725729E-4 23 0.0 0.0 0.0 1.2017107554314322E-4 4.806843021725729E-4 24 0.0 0.0 0.0 1.8025661331471483E-4 4.806843021725729E-4 25 0.0 0.0 0.0 2.4034215108628644E-4 4.806843021725729E-4 26 0.0 0.0 0.0 3.0042768885785805E-4 5.407698399441445E-4 27 0.0 0.0 0.0 3.0042768885785805E-4 5.407698399441445E-4 28 0.0 0.0 0.0 5.407698399441445E-4 5.407698399441445E-4 29 0.0 0.0 0.0 0.001261796293203004 5.407698399441445E-4 30 0.0 0.0 0.0 0.002583678124177579 5.407698399441445E-4 31 0.0 0.0 0.0 0.006849751305959164 5.407698399441445E-4 32 0.0 0.0 0.0 0.011476337714370177 5.407698399441445E-4 33 0.0 0.0 0.0 0.017785319180385197 6.008553777157161E-4 34 0.0 0.0 0.0 0.024214471721943357 6.008553777157161E-4 35 0.0 0.0 0.0 0.03166507840561824 6.008553777157161E-4 36 0.0 0.0 0.0 0.04446329795096299 6.609409154872877E-4 37 0.0 0.0 0.0 0.062128446055805045 6.609409154872877E-4 38 0.0 0.0 0.0 0.09006822111958585 6.609409154872877E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 3200 0.0 22.072065 1 GATATAC 795 0.0 19.92752 1 ATACACT 890 0.0 19.774092 4 TAATACT 405 0.0 19.55438 4 TAGGACC 1350 0.0 19.228474 4 TGTAGGA 1910 0.0 18.77487 2 TTAGGAC 1130 0.0 18.690266 3 GTATAAT 255 0.0 18.120369 1 AACGTAT 170 1.2732926E-10 18.11928 31 AACGCAG 3980 0.0 17.90847 6 GTAGGAC 1945 0.0 17.871464 3 GTATTAC 185 2.1827873E-11 17.840519 1 CTGTAGG 1925 0.0 17.83125 1 ACCGTCG 395 0.0 17.821178 8 GTCCTAC 1615 0.0 17.575396 1 GTATAGA 240 0.0 17.419285 1 TAGGACG 1770 0.0 17.400085 4 ATACCGT 420 0.0 17.284676 6 CGACGGT 460 0.0 17.21584 7 CCGTCGT 410 0.0 17.169184 9 >>END_MODULE