##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064090_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 920573 Sequences flagged as poor quality 0 Sequence length 25 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.226855447639675 32.0 32.0 32.0 32.0 32.0 2 30.824738505257052 32.0 32.0 32.0 32.0 32.0 3 30.849879368610637 32.0 32.0 32.0 32.0 32.0 4 30.882397159160654 32.0 32.0 32.0 32.0 32.0 5 30.799635661702006 32.0 32.0 32.0 32.0 32.0 6 34.445250946964556 36.0 36.0 36.0 32.0 36.0 7 34.36768295398627 36.0 36.0 36.0 32.0 36.0 8 34.334303743429366 36.0 36.0 36.0 32.0 36.0 9 34.457235873743855 36.0 36.0 36.0 32.0 36.0 10 34.16958025056134 36.0 36.0 36.0 32.0 36.0 11 34.444460135154955 36.0 36.0 36.0 32.0 36.0 12 34.26678058122496 36.0 36.0 36.0 32.0 36.0 13 34.350493659927025 36.0 36.0 36.0 32.0 36.0 14 34.238437364554464 36.0 36.0 36.0 32.0 36.0 15 34.18798617817381 36.0 36.0 36.0 32.0 36.0 16 34.1863111344782 36.0 36.0 36.0 32.0 36.0 17 34.11032150627924 36.0 36.0 36.0 32.0 36.0 18 34.10570155761683 36.0 36.0 36.0 32.0 36.0 19 34.12636477498254 36.0 36.0 36.0 32.0 36.0 20 34.096010854109345 36.0 36.0 36.0 32.0 36.0 21 34.076671812012734 36.0 36.0 36.0 32.0 36.0 22 34.06387652038459 36.0 36.0 36.0 32.0 36.0 23 34.00531082271585 36.0 36.0 36.0 32.0 36.0 24 34.00137957554697 36.0 36.0 36.0 32.0 36.0 25 33.591402311386496 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 2.0 4 7.0 5 8.0 6 43.0 7 11.0 8 37.0 9 48.0 10 91.0 11 29.0 12 61.0 13 44.0 14 83.0 15 148.0 16 249.0 17 340.0 18 443.0 19 658.0 20 942.0 21 1431.0 22 2270.0 23 3515.0 24 5169.0 25 7543.0 26 10551.0 27 13950.0 28 18771.0 29 25328.0 30 33203.0 31 44504.0 32 62702.0 33 88179.0 34 188251.0 35 411962.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.75490612642316 17.098824529165086 11.247550876033849 25.89871846837791 2 16.57077862681664 20.00199887454672 37.60752098275101 25.819701515885622 3 18.860775444405338 24.128787385015144 28.777391054971126 28.233046115608396 4 12.344737533920382 15.500392161974846 36.32093406247216 35.83393624163261 5 14.270132505657319 37.12885216444737 33.77682948954306 14.824185840352246 6 33.6853289529434 35.9836213396258 17.177386236971273 13.153663470459529 7 29.941469128143165 30.61511198225929 21.032325078310983 18.411093811286563 8 28.172411769691674 32.89552323142757 19.505314790787843 19.426750208092912 9 27.596366608269246 13.765742306538629 18.533319132472297 40.10457195271982 10 15.618125298900049 26.65938437459241 32.08360506064954 25.638885265858008 11 37.05259519782976 20.900482999378315 23.03202751053165 19.014894292260273 12 24.715784027382995 23.65957345049441 29.275087582759323 22.349554939363273 13 29.41439257740744 19.548544459685957 25.51646626855159 25.520596694355014 14 23.555435263477694 19.73971258164553 25.595364262165717 31.109487892711062 15 25.010108256162777 27.38152689013521 22.555541063432024 25.05282379026999 16 25.383567704115627 25.7835759651558 24.171803548116756 24.661052782611815 17 23.766615326589196 25.90148574633509 25.514641704592023 24.817257222483693 18 24.603672423558212 25.098735382651927 26.433361634033893 23.86423055975597 19 25.411776727440333 24.847812191547924 25.578857200005217 24.161553881006526 20 25.74654489596911 24.390376476701626 25.18690120679965 24.67617742052962 21 26.65650634078255 24.112692653040817 24.691439889207516 24.539361116969122 22 25.876386722253326 24.25390130288025 25.1734727710529 24.69623920381352 23 24.42535389806996 24.27510825405212 25.648301256649347 25.651236591228567 24 24.672244133006917 25.059463502237218 25.509190209285435 24.759102155470426 25 24.7863833228971 24.72757079245808 25.535617999025952 24.95042788561887 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 209.0 1 209.0 2 354.5 3 500.0 4 500.0 5 500.0 6 1242.5 7 1985.0 8 1985.0 9 1985.0 10 1940.0 11 1895.0 12 1895.0 13 1895.0 14 2083.5 15 2272.0 16 2272.0 17 2272.0 18 4011.5 19 5751.0 20 5751.0 21 5751.0 22 9643.0 23 13535.0 24 13535.0 25 13535.0 26 20184.5 27 26834.0 28 26834.0 29 26834.0 30 33782.0 31 40730.0 32 40730.0 33 40730.0 34 50495.0 35 60260.0 36 60260.0 37 60260.0 38 68561.5 39 76863.0 40 76863.0 41 76863.0 42 87429.5 43 97996.0 44 97996.0 45 97996.0 46 109217.0 47 120438.0 48 120438.0 49 120438.0 50 123735.0 51 127032.0 52 127032.0 53 127032.0 54 117078.5 55 107125.0 56 107125.0 57 107125.0 58 96914.0 59 86703.0 60 86703.0 61 86703.0 62 75504.5 63 64306.0 64 64306.0 65 64306.0 66 53172.0 67 42038.0 68 42038.0 69 42038.0 70 31555.0 71 21072.0 72 21072.0 73 21072.0 74 16222.5 75 11373.0 76 11373.0 77 11373.0 78 8991.5 79 6610.0 80 6610.0 81 6610.0 82 4529.0 83 2448.0 84 2448.0 85 2448.0 86 1853.5 87 1259.0 88 1259.0 89 1259.0 90 931.5 91 604.0 92 604.0 93 604.0 94 433.5 95 263.0 96 263.0 97 263.0 98 367.5 99 472.0 100 472.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.037585286555221586 2 0.005974539770338691 3 0.0018466759290137772 4 0.003801979853851894 5 0.009124751649244547 6 0.011623195553204364 7 0.022160111148165327 8 0.03378330670136969 9 0.04790494615853387 10 0.057898721774373135 11 0.05311908995810218 12 0.06365600555306315 13 0.06202658561569806 14 0.0640905175363605 15 0.057898721774373135 16 0.06430777352800919 17 0.06126618964492767 18 0.0749533171187945 19 0.07136859325659127 20 0.07625685306868657 21 0.07115133726494259 22 0.07473606112714581 23 0.08103648488495752 24 0.07397566515637542 25 0.07614822507286223 >>END_MODULE >>Sequence Length Distribution pass #Length Count 25 920573.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.63874750516816 #Duplication Level Percentage of deduplicated Percentage of total 1 75.3123991505793 40.39662762046364 2 14.607712662008629 15.670788222110577 3 4.6387245684438145 7.464461276183338 4 1.9884137697651856 4.266240965289375 5 0.9557422281289573 2.5632408027317988 6 0.5874954640844688 1.890751251507505 7 0.3638081525431044 1.3659949544206895 8 0.2595690432391774 1.1138366696371451 9 0.18087167437664764 0.8731557065453397 >10 0.9341962951683704 8.993912011540564 >50 0.08116290689232553 3.0854697126377673 >100 0.08075095402587719 8.535546207736502 >500 0.008542922027876397 3.1613618884228103 >1k 6.102087162768855E-4 0.6186127107729615 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTT 2320 0.25201695031246846 No Hit TATCAACGCAGAGTACTTTTTTTTT 1853 0.2012876762625017 No Hit GTACTTTTTTTTTTTTTTTTTTTTT 1497 0.16261610974903673 No Hit ACGCAGAGTACTTTTTTTTTTTTTT 960 0.10428287599136624 No Hit GTTCAAAGCAGGCCCGAGCCGCCTG 937 0.10178443208740642 No Hit GCGCAAGACGGACCAGAGCGAAAGC 928 0.10080678012498738 No Hit GAGTACTTTTTTTTTTTTTTTTTTT 923 0.10026364014586568 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.0862799582433983E-4 2 0.0 0.0 0.0 0.0 1.0862799582433983E-4 3 0.0 0.0 0.0 0.0 1.0862799582433983E-4 4 0.0 0.0 0.0 0.0 1.0862799582433983E-4 5 0.0 0.0 0.0 0.0 2.1725599164867967E-4 6 0.0 0.0 0.0 0.0 2.1725599164867967E-4 7 0.0 0.0 0.0 0.0 2.1725599164867967E-4 8 0.0 0.0 0.0 0.0 2.1725599164867967E-4 9 0.0 0.0 0.0 0.0 3.2588398747301954E-4 10 0.0 0.0 0.0 0.0 3.2588398747301954E-4 11 0.0 0.0 0.0 3.2588398747301954E-4 3.2588398747301954E-4 12 0.0 0.0 0.0 3.2588398747301954E-4 6.517679749460391E-4 13 0.0 0.0 0.0 3.2588398747301954E-4 8.690239665947187E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGTTAT 90 2.2901077E-9 14.774693 1 CGAACGT 60 2.5671212E-5 14.249349 4 TCGAACG 60 2.5697544E-5 14.2478 3 GTGACCG 55 1.958642E-4 13.8183 9 CGAGCCG 160 0.0 13.657109 15 GTTATTC 100 1.0071744E-8 13.297945 3 ATTCGAA 65 5.4584587E-5 13.151098 1 GCATCGC 125 1.0186341E-10 12.920813 14 CATCGCC 130 1.9645086E-10 12.423858 15 AGGCCCG 170 0.0 12.294223 10 ACGGTAT 140 5.2750693E-11 12.214391 9 TTATACA 70 1.0904333E-4 12.213727 4 ATGGCGA 180 0.0 12.139653 17 TTTCGTT 55 0.0030653651 12.09167 17 TAATAGT 55 0.0030678622 12.090355 4 TTAGCCT 55 0.0030678622 12.090355 4 CGGTCCA 190 0.0 12.000102 10 CGCATCG 135 3.6925485E-10 11.9637165 13 TGGCGAG 170 1.8189894E-12 11.7360325 18 TTAATAT 235 0.0 11.721593 3 >>END_MODULE