##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064090_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 920573 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.301307989697722 32.0 32.0 32.0 32.0 32.0 2 31.39543523435947 32.0 32.0 32.0 32.0 32.0 3 31.470838271380977 32.0 32.0 32.0 32.0 32.0 4 31.556195977939826 32.0 32.0 32.0 32.0 32.0 5 31.50214703233747 32.0 32.0 32.0 32.0 32.0 6 35.079138753797906 36.0 36.0 36.0 36.0 36.0 7 35.10321723535233 36.0 36.0 36.0 36.0 36.0 8 35.05191331920445 36.0 36.0 36.0 36.0 36.0 9 35.15088645875993 36.0 36.0 36.0 36.0 36.0 10 35.00689461889497 36.0 36.0 36.0 36.0 36.0 11 35.16386424542106 36.0 36.0 36.0 36.0 36.0 12 35.060990274535534 36.0 36.0 36.0 36.0 36.0 13 35.10800664368823 36.0 36.0 36.0 36.0 36.0 14 35.048140668909475 36.0 36.0 36.0 36.0 36.0 15 35.015959625146515 36.0 36.0 36.0 36.0 36.0 16 35.03421999124458 36.0 36.0 36.0 36.0 36.0 17 34.99738315158059 36.0 36.0 36.0 36.0 36.0 18 34.99829997186535 36.0 36.0 36.0 36.0 36.0 19 34.99862259701295 36.0 36.0 36.0 36.0 36.0 20 34.985774077666846 36.0 36.0 36.0 36.0 36.0 21 34.97232810434371 36.0 36.0 36.0 36.0 36.0 22 34.967350769575035 36.0 36.0 36.0 36.0 36.0 23 34.91725371046077 36.0 36.0 36.0 32.0 36.0 24 34.89831659194871 36.0 36.0 36.0 32.0 36.0 25 34.86365013964129 36.0 36.0 36.0 32.0 36.0 26 34.79335479098344 36.0 36.0 36.0 32.0 36.0 27 34.8007154239805 36.0 36.0 36.0 32.0 36.0 28 34.77848796347492 36.0 36.0 36.0 32.0 36.0 29 34.74893571721091 36.0 36.0 36.0 32.0 36.0 30 34.72855710519426 36.0 36.0 36.0 32.0 36.0 31 34.722409846910566 36.0 36.0 36.0 32.0 36.0 32 34.671133087761646 36.0 36.0 36.0 32.0 36.0 33 34.65103473597422 36.0 36.0 36.0 32.0 36.0 34 34.63400947018867 36.0 36.0 36.0 32.0 36.0 35 34.599057326252236 36.0 36.0 36.0 32.0 36.0 36 34.558517358210594 36.0 36.0 36.0 32.0 36.0 37 34.55924625206257 36.0 36.0 36.0 32.0 36.0 38 34.514110233517606 36.0 36.0 36.0 32.0 36.0 39 34.50184070138924 36.0 36.0 36.0 32.0 36.0 40 34.49097464296693 36.0 36.0 36.0 32.0 36.0 41 34.47025711160332 36.0 36.0 36.0 32.0 36.0 42 34.401733485557365 36.0 36.0 36.0 32.0 36.0 43 34.39124110744069 36.0 36.0 36.0 32.0 36.0 44 34.32492588854985 36.0 36.0 36.0 32.0 36.0 45 34.28850726666978 36.0 36.0 36.0 32.0 36.0 46 34.265561775111806 36.0 36.0 36.0 32.0 36.0 47 34.22781246028289 36.0 36.0 36.0 32.0 36.0 48 34.17884947744503 36.0 36.0 36.0 32.0 36.0 49 34.14441548904867 36.0 36.0 36.0 32.0 36.0 50 33.5660691764803 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 4.0 20 15.0 21 27.0 22 102.0 23 310.0 24 805.0 25 1674.0 26 3684.0 27 6598.0 28 10908.0 29 16357.0 30 23877.0 31 33292.0 32 47815.0 33 77259.0 34 160157.0 35 537688.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.980866358926335 18.086027509769433 11.796000534507801 26.137105596796427 2 15.941444910701968 20.78366749260512 37.284114498750235 25.990773097942686 3 17.988548386921565 24.954131629459607 29.09146408362654 27.965855899992288 4 11.9870993392159 16.172753274319366 36.57113558620555 35.269011800259186 5 13.884721798271293 37.449610188436985 33.65414801433455 15.011519998957171 6 33.63256855271033 36.49666673546469 16.777123713703155 13.093640998121813 7 29.71185306526812 30.953472406286526 21.040831135424497 18.29384339302086 8 28.035364930320572 33.21637719116246 19.437893572807372 19.310364305709594 9 27.787759624576346 13.688950204223516 18.35371947510211 40.16957069609803 10 15.650028732292162 26.886907742728123 31.9605199838795 25.502543541100213 11 37.30155023012841 20.91740687593488 22.9338683624221 18.84717453151461 12 24.696466222667837 23.702954572858424 29.201377837499038 22.3992013669747 13 29.581205577842447 19.587082365184216 25.374468672161083 25.45724338481225 14 23.654532182165003 19.606722776708395 25.56779915096266 31.170945890163942 15 25.014448166929558 27.446085524457597 22.590197842117384 24.94926846649546 16 25.479703835023592 25.844369997653622 24.069053019440172 24.60687314788261 17 23.82744225607312 26.000653940534864 25.33726277003562 24.8346410333564 18 24.6636858982715 25.04377732008934 26.50613534252766 23.786401439111504 19 25.544797739663753 24.753332442581833 25.636262710860976 24.065607106893438 20 25.811914561723103 24.24701625404233 25.27290127540407 24.668167908830497 21 26.848169563956365 24.055886931291706 24.714715725966325 24.381227778785604 22 25.9530748783638 24.282376302585455 25.24112699373108 24.523421825319666 23 24.4352109845584 24.169613226659713 25.76960888150212 25.62556690727977 24 24.750615653178965 24.959834536758326 25.682867189460406 24.606682620602303 25 24.933518727730945 24.45337620578778 25.74074476405666 24.87236030242461 26 24.492387578962234 25.317233999793597 25.990755375949853 24.199623045294313 27 25.12797059066358 24.832269446532624 25.253985773320416 24.78577418948338 28 24.45075477765128 24.81836669071063 25.989966715044275 24.740911816593812 29 24.478795515773008 24.722668810289388 25.851438254975236 24.94709741896237 30 24.38921852560774 25.15279042129528 26.049979251354095 24.408011801742884 31 25.13918838910827 24.819041514804212 24.955812778716265 25.085957317371253 32 24.722961823536377 25.16965566987239 24.808237764531942 25.299144742059287 33 24.398415255609017 24.698134872741377 25.594469255111473 25.308980616538136 34 25.263754790603898 24.737983296978335 25.540545238074547 24.457716674343217 35 25.5642291330816 24.636086331185336 25.640270795221976 24.159413740511088 36 24.66417598319169 25.22658954890673 25.154454604414788 24.954779863486788 37 25.406743628488837 24.9981804217728 25.02533830576084 24.569737643977522 38 24.734847209201018 24.884981863255792 25.39241961223543 24.98775131530776 39 25.254633150107548 24.8208660134269 24.891150846242425 25.03334999022313 40 25.58342901898758 24.987588927911496 25.41298724999973 24.015994803101194 41 24.50507741041206 25.37890473935091 25.77877525126338 24.337242598973656 42 25.798752932997303 25.53934561571218 25.013144173112018 23.6487572781785 43 24.908995512509247 24.653824469697216 25.422487857921112 25.014692159872425 44 24.6266435505036 25.39030250888582 24.893652614472803 25.08940132613778 45 24.828691975788754 25.537062061953325 24.927218531248236 24.707027431009685 46 24.642259298325275 25.097412578524803 24.986068399001052 25.274259724148866 47 24.8863725243115 25.069740764237107 25.296126671822993 24.747760039628396 48 25.611776348449904 25.419284194243268 24.407939975471372 24.560999481835456 49 24.73779860543076 25.68166931176411 24.68152918134506 24.899002901460072 50 24.95081814063785 25.805947012860607 24.45937974913178 24.783855097369763 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 83.0 1 53.0 2 23.0 3 93.5 4 164.0 5 179.5 6 195.0 7 175.5 8 156.0 9 233.0 10 310.0 11 469.0 12 628.0 13 1120.5 14 1613.0 15 2156.0 16 2699.0 17 2891.0 18 3083.0 19 3096.0 20 3109.0 21 3330.0 22 3551.0 23 4012.0 24 4473.0 25 5017.5 26 5562.0 27 6886.0 28 8210.0 29 9844.5 30 11479.0 31 13073.0 32 14667.0 33 17291.5 34 19916.0 35 23334.0 36 26752.0 37 31207.0 38 35662.0 39 38551.0 40 41440.0 41 45133.5 42 48827.0 43 49751.5 44 50676.0 45 56068.0 46 61460.0 47 64508.5 48 67557.0 49 69824.0 50 72091.0 51 69797.5 52 67504.0 53 67365.5 54 67227.0 55 66494.5 56 65762.0 57 63273.0 58 60784.0 59 55197.5 60 49611.0 61 43379.5 62 37148.0 63 32079.0 64 27010.0 65 23035.5 66 19061.0 67 16360.0 68 13659.0 69 12413.5 70 11168.0 71 8706.0 72 6244.0 73 5190.0 74 4136.0 75 3260.5 76 2385.0 77 2063.5 78 1742.0 79 1462.5 80 1183.0 81 980.5 82 778.0 83 600.0 84 422.0 85 290.5 86 159.0 87 112.5 88 66.0 89 54.5 90 43.0 91 37.5 92 32.0 93 28.5 94 25.0 95 19.5 96 14.0 97 13.0 98 12.0 99 12.0 100 12.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.010862799582433984 2 4.3451198329735934E-4 3 4.3451198329735934E-4 4 0.0 5 0.0 6 4.3451198329735934E-4 7 1.0862799582433983E-4 8 0.0 9 0.0014121639457164179 10 6.517679749460391E-4 11 0.0 12 0.0 13 2.1725599164867967E-4 14 1.0862799582433983E-4 15 0.004453747828797933 16 5.431399791216992E-4 17 0.0 18 5.431399791216992E-4 19 2.1725599164867967E-4 20 2.1725599164867967E-4 21 0.0 22 0.0 23 8.690239665947187E-4 24 6.517679749460391E-4 25 0.0014121639457164179 26 0.004127863841324914 27 0.005322771795392652 28 0.004019235845500574 29 0.0014121639457164179 30 0.0033674678705545346 31 0.006300423757811711 32 0.0034760958663788747 33 0.0049968878079196324 34 0.002281187912311137 35 0.002715699895608496 36 0.008255727682649828 37 0.003258839874730195 38 0.007169447724406429 39 0.0035847238622032144 40 0.0026070718997841563 41 0.002715699895608496 42 0.0014121639457164179 43 0.0015207919415407578 44 5.431399791216992E-4 45 9.776519624190585E-4 46 4.3451198329735934E-4 47 0.002281187912311137 48 0.0017380479331894373 49 2.1725599164867967E-4 50 0.0010862799582433984 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 920573.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.80104012475897 #Duplication Level Percentage of deduplicated Percentage of total 1 76.3370194509167 43.36022104836025 2 14.162165254578293 16.08851433757538 3 4.486858064266501 7.645746148274997 4 1.841767523805507 4.184572440806183 5 0.945193861355444 2.684399722226322 6 0.5075101632169882 1.729626308676667 7 0.3480254037872515 1.383774344746858 8 0.24575712784129297 1.1167408383567041 9 0.17795093570657752 0.9097018415376943 >10 0.8038065016222068 8.156326130708168 >50 0.0690897900522525 2.7384787902561163 >100 0.06889054092643782 7.663137629540502 >500 0.005772950249559971 2.2185269067208737 >1k 1.924316749853324E-4 0.12023351221328085 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 1100 0.11949079540677382 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 969 0.10526052795378531 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 946 0.1027620840498255 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.0862799582433983E-4 2 0.0 0.0 0.0 1.0862799582433983E-4 1.0862799582433983E-4 3 0.0 0.0 0.0 1.0862799582433983E-4 1.0862799582433983E-4 4 0.0 0.0 0.0 1.0862799582433983E-4 1.0862799582433983E-4 5 0.0 0.0 0.0 2.1725599164867967E-4 1.0862799582433983E-4 6 0.0 0.0 0.0 2.1725599164867967E-4 2.1725599164867967E-4 7 0.0 0.0 0.0 2.1725599164867967E-4 2.1725599164867967E-4 8 0.0 0.0 0.0 2.1725599164867967E-4 3.2588398747301954E-4 9 0.0 0.0 0.0 2.1725599164867967E-4 3.2588398747301954E-4 10 0.0 0.0 0.0 2.1725599164867967E-4 3.2588398747301954E-4 11 0.0 0.0 0.0 3.2588398747301954E-4 3.2588398747301954E-4 12 0.0 0.0 0.0 3.2588398747301954E-4 6.517679749460391E-4 13 0.0 0.0 0.0 3.2588398747301954E-4 8.690239665947187E-4 14 0.0 0.0 0.0 3.2588398747301954E-4 0.0010862799582433984 15 0.0 0.0 0.0 3.2588398747301954E-4 0.0013035359498920782 16 0.0 0.0 0.0 3.2588398747301954E-4 0.0013035359498920782 17 0.0 0.0 0.0 3.2588398747301954E-4 0.0013035359498920782 18 0.0 0.0 0.0 3.2588398747301954E-4 0.0013035359498920782 19 0.0 0.0 0.0 3.2588398747301954E-4 0.0013035359498920782 20 0.0 0.0 0.0 3.2588398747301954E-4 0.0014121639457164179 21 0.0 0.0 0.0 8.690239665947187E-4 0.0014121639457164179 22 0.0 0.0 0.0 0.0010862799582433984 0.0014121639457164179 23 0.0 0.0 0.0 0.0013035359498920782 0.0015207919415407578 24 0.0 0.0 0.0 0.001955303924838117 0.0015207919415407578 25 0.0 0.0 0.0 0.0024984439039598162 0.0015207919415407578 26 0.0 0.0 0.0 0.0028243278914328357 0.0017380479331894373 27 0.0 0.0 0.0 0.0032588398747301953 0.0017380479331894373 28 0.0 0.0 0.0 0.0049968878079196324 0.0018466759290137772 29 0.0 0.0 0.0 0.00792984369517681 0.0018466759290137772 30 0.0 0.0 0.0 0.01346987148221814 0.0018466759290137772 31 0.0 0.0 0.0 0.024875811043773823 0.0018466759290137772 32 0.0 0.0 0.0 0.038128426534343285 0.0018466759290137772 33 0.0 0.0 0.0 0.0507292740499667 0.0018466759290137772 34 0.0 0.0 0.0 0.06724072941526636 0.001955303924838117 35 0.0 0.0 0.0 0.08744553663859357 0.001955303924838117 36 0.0 0.0 0.0 0.11427665160720551 0.001955303924838117 37 0.0 0.0 0.0 0.15729333795364409 0.001955303924838117 38 0.0 0.0 0.0 0.2132367558031791 0.001955303924838117 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATACTG 135 0.0 24.442362 5 TTAACGG 90 4.0765553E-7 22.00171 35 GTATCAA 1885 0.0 21.35975 1 TCCAATA 315 0.0 20.950598 2 TAGGACG 140 1.8553692E-10 20.426832 4 GTATTAA 135 2.593879E-9 19.557077 1 GTATAGG 90 1.0008618E-5 19.557076 1 TAGCGTA 225 0.0 19.55389 7 GTATTAG 195 0.0 19.18098 1 ACTGCGC 70 8.1259635E-4 18.855537 8 AGCGTAT 245 0.0 18.855536 8 ATAGCGT 235 0.0 18.72181 6 GTAGGAC 295 0.0 18.642479 3 ATAATAC 155 7.221388E-10 18.45004 3 ATATACT 155 7.221388E-10 18.45004 4 AACGCAG 2185 0.0 18.323383 6 CGTATAT 255 0.0 18.118073 10 AATAGCG 245 0.0 17.957653 5 CCAATAC 125 4.8537004E-7 17.598501 3 CATATAC 150 9.596988E-9 17.5985 3 >>END_MODULE