##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064081_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1387939 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.324234710603275 32.0 32.0 32.0 32.0 32.0 2 31.427028853573535 32.0 32.0 32.0 32.0 32.0 3 31.4898968902812 32.0 32.0 32.0 32.0 32.0 4 31.57318225080497 32.0 32.0 32.0 32.0 32.0 5 31.523381791274687 32.0 32.0 32.0 32.0 32.0 6 35.11756856749468 36.0 36.0 36.0 36.0 36.0 7 35.134750878821045 36.0 36.0 36.0 36.0 36.0 8 35.08138614160997 36.0 36.0 36.0 36.0 36.0 9 35.17672966895519 36.0 36.0 36.0 36.0 36.0 10 35.03985837994321 36.0 36.0 36.0 36.0 36.0 11 35.183241482514724 36.0 36.0 36.0 36.0 36.0 12 35.087425311919326 36.0 36.0 36.0 36.0 36.0 13 35.129993465130674 36.0 36.0 36.0 36.0 36.0 14 35.072420329711896 36.0 36.0 36.0 36.0 36.0 15 35.04620303918256 36.0 36.0 36.0 36.0 36.0 16 35.06045294497813 36.0 36.0 36.0 36.0 36.0 17 35.020330144192215 36.0 36.0 36.0 36.0 36.0 18 35.014551071769006 36.0 36.0 36.0 36.0 36.0 19 35.01068130515822 36.0 36.0 36.0 36.0 36.0 20 35.012548822390606 36.0 36.0 36.0 36.0 36.0 21 35.00168667354978 36.0 36.0 36.0 36.0 36.0 22 34.98815509903533 36.0 36.0 36.0 36.0 36.0 23 34.938602489014286 36.0 36.0 36.0 36.0 36.0 24 34.9099153493057 36.0 36.0 36.0 32.0 36.0 25 34.88265334427522 36.0 36.0 36.0 32.0 36.0 26 34.82368317339595 36.0 36.0 36.0 32.0 36.0 27 34.816427811308714 36.0 36.0 36.0 32.0 36.0 28 34.79558899922835 36.0 36.0 36.0 32.0 36.0 29 34.75185076577573 36.0 36.0 36.0 32.0 36.0 30 34.73099970531846 36.0 36.0 36.0 32.0 36.0 31 34.739639133996526 36.0 36.0 36.0 32.0 36.0 32 34.69487563934726 36.0 36.0 36.0 32.0 36.0 33 34.67636113690875 36.0 36.0 36.0 32.0 36.0 34 34.66633187769779 36.0 36.0 36.0 32.0 36.0 35 34.62413693973583 36.0 36.0 36.0 32.0 36.0 36 34.59364424517216 36.0 36.0 36.0 32.0 36.0 37 34.58906191122232 36.0 36.0 36.0 32.0 36.0 38 34.54354478114672 36.0 36.0 36.0 32.0 36.0 39 34.53316752393297 36.0 36.0 36.0 32.0 36.0 40 34.50816354321047 36.0 36.0 36.0 32.0 36.0 41 34.499122079572665 36.0 36.0 36.0 32.0 36.0 42 34.42191119350346 36.0 36.0 36.0 32.0 36.0 43 34.42584148150603 36.0 36.0 36.0 32.0 36.0 44 34.35175393154886 36.0 36.0 36.0 32.0 36.0 45 34.3186573761527 36.0 36.0 36.0 32.0 36.0 46 34.292246993563836 36.0 36.0 36.0 32.0 36.0 47 34.25808050641995 36.0 36.0 36.0 32.0 36.0 48 34.21471116526015 36.0 36.0 36.0 32.0 36.0 49 34.19436517022722 36.0 36.0 36.0 32.0 36.0 50 33.59206996849285 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 2.0 19 3.0 20 8.0 21 52.0 22 133.0 23 397.0 24 1172.0 25 2648.0 26 5247.0 27 9569.0 28 15763.0 29 24224.0 30 35058.0 31 49335.0 32 70799.0 33 113941.0 34 238583.0 35 821002.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.001749515244484 18.00357829188803 11.836969389968246 26.157702802899234 2 16.0233354371828 20.472688863719547 36.97299291319748 26.530982785900175 3 18.054028505678225 24.393378935886002 28.746179573380292 28.806412985055484 4 12.232742217057089 15.940181809142908 35.89956042736748 35.92751554643252 5 14.23030839251581 36.98210079837803 33.28654933682244 15.501041472283724 6 34.37574300869347 35.7818576910496 16.575091970967005 13.267307329289926 7 30.46733321853482 30.504726792748095 20.721083563470728 18.306856425246355 8 28.281430235766848 32.95000716890296 19.15415591031018 19.61440668502002 9 27.653290756370335 13.88705961014988 18.377670726944963 40.08197890653483 10 16.11919629894613 26.48665745870286 31.26564831486337 26.128497927487643 11 37.49833386049387 20.898540930112922 22.51467823874104 19.088446970652168 12 25.07053639360893 23.623711756161665 28.5197588361423 22.785993014087104 13 29.601399493202475 19.288062591007765 25.405081376523757 25.705456539266002 14 23.79036209162382 19.75948458718558 24.980834851174695 31.46931847001591 15 25.134305946640765 27.520974496280648 22.089293279803098 25.25542627727549 16 25.841921080863763 25.65776153933168 23.77769147801001 24.722625901794544 17 24.13542670102937 26.11339547343219 25.006286299325836 24.744891526212605 18 25.07576008657472 24.646200755943724 26.33338472866865 23.944654428812896 19 25.759291841566412 24.783095498502096 25.31827790578542 24.139334754146077 20 26.136908921919694 24.039901147752406 24.896068245516705 24.927121684811194 21 27.17648253993871 23.945288661821593 24.302653070487967 24.575575727751726 22 26.304489105421137 24.1798264763988 24.854208185091842 24.661476233088223 23 24.401696346485828 24.119908582890705 25.57128488303394 25.90711018758952 24 24.953077706200517 24.894429342050373 25.24812076663643 24.904372185112685 25 24.96628018571836 24.353199203405413 25.399666260299675 25.280854350576554 26 24.624025478074156 25.381450578588616 25.761243929502974 24.23328001383425 27 25.46469727396333 24.683050411467036 24.81973773614951 25.032514578420116 28 24.536824547056092 24.703555461085912 25.734275307756878 25.02534468410112 29 24.67632684558004 24.70312998731174 25.564793352820853 25.05574981428737 30 24.526960086750705 24.916977991692395 25.784485025776632 24.77157689578027 31 25.364669498901883 24.61349788735236 24.679644222067225 25.342188391678533 32 25.01664389839008 24.8597877650775 24.539807017240484 25.583761319291938 33 24.459064727777882 24.47952768046667 25.38306791538713 25.678339676368317 34 25.327976574748686 24.525903808908975 25.434828345476348 24.711291270865996 35 25.858133462449633 24.465954221353762 25.389078144183713 24.286834172012888 36 24.608002859141866 25.13515714111753 25.07246930277433 25.18437069696627 37 25.656160272645067 24.889237941183886 24.718906825853725 24.735694960317318 38 24.754688974874444 24.72111137531254 25.333290100372523 25.190909549440494 39 25.66117265603891 24.474034044852743 24.5976763037017 25.267116995406646 40 25.76394137622208 24.722944936274274 25.17117575389023 24.34193793361342 41 24.678956261100442 25.193980812669547 25.61526628455323 24.511796641676785 42 26.00434897263087 25.346239032101415 24.836409172326242 23.813002822941478 43 25.05218259043241 24.387732678153924 25.31732851075174 25.242756220661928 44 24.75086730815648 25.043032174160523 24.836319227042004 25.369781290640997 45 24.809408631784176 25.349282413861925 24.88607027653671 24.95523867781719 46 24.67573826194844 24.782156345961805 25.108183312895104 25.433922079194655 47 25.085182711422082 24.565980665740085 25.465181544190173 24.883655078647653 48 25.696100110165567 25.32806498399393 24.307826654590965 24.66800825124954 49 24.859179182871806 25.464467330579122 24.512837065739436 25.163516420809636 50 24.828952677387743 25.790679578073668 24.464594501123983 24.915773243414606 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 44.0 1 33.5 2 23.0 3 87.0 4 151.0 5 193.0 6 235.0 7 235.0 8 235.0 9 297.5 10 360.0 11 565.5 12 771.0 13 1434.5 14 2098.0 15 2772.5 16 3447.0 17 3672.0 18 3897.0 19 3874.5 20 3852.0 21 4286.5 22 4721.0 23 5378.5 24 6036.0 25 6874.5 26 7713.0 27 9507.5 28 11302.0 29 13613.5 30 15925.0 31 18835.5 32 21746.0 33 25517.5 34 29289.0 35 34386.0 36 39483.0 37 46186.5 38 52890.0 39 56972.5 40 61055.0 41 66184.5 42 71314.0 43 73174.5 44 75035.0 45 82722.0 46 90409.0 47 96156.5 48 101904.0 49 105855.0 50 109806.0 51 105142.5 52 100479.0 53 99295.0 54 98111.0 55 98792.0 56 99473.0 57 96959.0 58 94445.0 59 86185.0 60 77925.0 61 68177.5 62 58430.0 63 50984.0 64 43538.0 65 37219.5 66 30901.0 67 26708.5 68 22516.0 69 20632.0 70 18748.0 71 14353.5 72 9959.0 73 8666.5 74 7374.0 75 5775.5 76 4177.0 77 3674.0 78 3171.0 79 2614.0 80 2057.0 81 1672.5 82 1288.0 83 1071.0 84 854.0 85 606.5 86 359.0 87 265.0 88 171.0 89 129.0 90 87.0 91 70.5 92 54.0 93 36.0 94 18.0 95 27.0 96 36.0 97 25.0 98 14.0 99 13.5 100 13.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.009078208768540982 2 5.043449315856101E-4 3 3.6024637970400716E-4 4 0.0 5 0.0 6 7.204927594080143E-5 7 0.0 8 0.0 9 0.0015130347947568301 10 7.204927594080143E-4 11 0.0 12 2.161478278224043E-4 13 5.763942075264115E-4 14 2.161478278224043E-4 15 0.004539104384270491 16 8.645913112896172E-4 17 0.0 18 3.6024637970400716E-4 19 7.204927594080143E-5 20 6.484434834672129E-4 21 0.0 22 7.204927594080143E-5 23 0.0010807391391120214 24 4.322956556448086E-4 25 0.002233527554164844 26 0.005691892799323313 27 0.0072049275940801434 28 0.005331646419619306 29 0.0030260695895136603 30 0.0038906609008032777 31 0.007709272525665754 32 0.0030981188654544615 33 0.004683202936152093 34 0.00252172465792805 35 0.0030981188654544615 36 0.007925420353488158 37 0.0038906609008032777 38 0.007853371077547357 39 0.004611153660211292 40 0.0027378724857504548 41 0.003170168141395263 42 0.0018012318985200359 43 0.0017291826225792344 44 0.0017291826225792344 45 0.0015850840706976314 46 0.0012248376909936244 47 0.0028819710376320573 48 0.0020173797263424403 49 3.6024637970400716E-4 50 0.0013689362428752274 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1387939.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.20202605487689 #Duplication Level Percentage of deduplicated Percentage of total 1 81.07510972841916 47.18735648815455 2 11.690670194596366 13.608413825297408 3 3.2457031933878935 5.66719505483878 4 1.320242801439475 3.073632237125759 5 0.7186143819358133 2.091240649041873 6 0.4234505497877362 1.4787407959018661 7 0.2790540938970452 1.1369059550601124 8 0.2009268498975022 0.9355479802287009 9 0.15513220271655098 0.8126107654013229 >10 0.7477363997066656 7.664760642067807 >50 0.06813715300851907 2.788403103312589 >100 0.06413838095101249 8.18094676347898 >500 0.008717808066634984 3.527621183833581 >1k 0.00236626218951521 1.8466245562566899 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 1784 0.12853590827838976 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 1689 0.12169122706401363 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 1683 0.12125893140836881 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 1518 0.10937080087813657 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 1508 0.10865030811872856 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA 1438 0.10360685880287247 No Hit ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCG 1435 0.10339071097505005 No Hit CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA 1423 0.10252611966376043 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 7.204927594080143E-5 0.0 0.0 0.0 4 0.0 7.204927594080143E-5 0.0 0.0 0.0 5 0.0 7.204927594080143E-5 0.0 0.0 0.0 6 0.0 7.204927594080143E-5 0.0 0.0 0.0 7 0.0 7.204927594080143E-5 0.0 0.0 0.0 8 0.0 7.204927594080143E-5 0.0 0.0 0.0 9 0.0 7.204927594080143E-5 0.0 0.0 7.204927594080143E-5 10 0.0 7.204927594080143E-5 0.0 0.0 7.204927594080143E-5 11 0.0 7.204927594080143E-5 0.0 0.0 7.204927594080143E-5 12 0.0 7.204927594080143E-5 0.0 0.0 7.204927594080143E-5 13 0.0 7.204927594080143E-5 0.0 0.0 2.8819710376320573E-4 14 0.0 7.204927594080143E-5 0.0 0.0 2.8819710376320573E-4 15 0.0 7.204927594080143E-5 0.0 0.0 2.8819710376320573E-4 16 0.0 7.204927594080143E-5 0.0 0.0 3.6024637970400716E-4 17 0.0 7.204927594080143E-5 0.0 7.204927594080143E-5 3.6024637970400716E-4 18 0.0 7.204927594080143E-5 0.0 2.161478278224043E-4 3.6024637970400716E-4 19 0.0 7.204927594080143E-5 0.0 2.161478278224043E-4 3.6024637970400716E-4 20 0.0 7.204927594080143E-5 0.0 3.6024637970400716E-4 3.6024637970400716E-4 21 0.0 7.204927594080143E-5 0.0 5.043449315856101E-4 4.322956556448086E-4 22 0.0 7.204927594080143E-5 0.0 7.204927594080143E-4 5.043449315856101E-4 23 0.0 7.204927594080143E-5 0.0 0.0012248376909936244 5.043449315856101E-4 24 0.0 7.204927594080143E-5 0.0 0.0017291826225792344 5.763942075264115E-4 25 0.0 7.204927594080143E-5 0.0 0.0020173797263424403 5.763942075264115E-4 26 0.0 7.204927594080143E-5 0.0 0.002377626106046447 6.484434834672129E-4 27 0.0 7.204927594080143E-5 0.0 0.002809921761691256 6.484434834672129E-4 28 0.0 7.204927594080143E-5 0.0 0.005115498591796902 7.204927594080143E-4 29 0.0 7.204927594080143E-5 0.0 0.008790011664777775 7.204927594080143E-4 30 1.4409855188160286E-4 7.204927594080143E-5 0.0 0.017291826225792343 7.204927594080143E-4 31 1.4409855188160286E-4 7.204927594080143E-5 0.0 0.04193267859754644 7.204927594080143E-4 32 1.4409855188160286E-4 7.204927594080143E-5 0.0 0.06686172807306373 7.204927594080143E-4 33 1.4409855188160286E-4 7.204927594080143E-5 0.0 0.08919700361471218 7.204927594080143E-4 34 1.4409855188160286E-4 7.204927594080143E-5 0.0 0.11419810236617027 7.925420353488158E-4 35 1.4409855188160286E-4 7.204927594080143E-5 0.0 0.1456115866763597 7.925420353488158E-4 36 1.4409855188160286E-4 7.204927594080143E-5 0.0 0.18776041310172853 7.925420353488158E-4 37 1.4409855188160286E-4 7.204927594080143E-5 0.0 0.25375754986350263 7.925420353488158E-4 38 1.4409855188160286E-4 7.204927594080143E-5 0.0 0.33877569547364833 7.925420353488158E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATAGCG 25 0.0023531392 35.19931 5 GACGGGT 50 0.0025809228 21.999569 7 GTATCAA 2790 0.0 21.528011 1 GTCCTAC 445 0.0 20.765135 1 TAGCCCG 55 0.0044844514 19.999607 5 TAGGACG 340 0.0 19.411383 4 TCCTACA 555 0.0 19.026653 2 GATATAC 235 0.0 18.724386 1 GTCCTAG 225 0.0 17.600922 1 AACGCAG 3395 0.0 17.431175 6 CGACGGT 430 0.0 17.395006 7 TTAGGAC 280 0.0 17.284754 3 TACGACG 450 0.0 17.110775 5 ACGACGG 440 0.0 16.999666 6 TTAGTAC 130 7.3229785E-7 16.922134 3 CGAGCCG 495 0.0 16.888556 15 GTAGGAC 530 0.0 16.602848 3 CGTCGTA 400 0.0 16.50027 10 ATAGTAC 120 6.411303E-6 16.499083 3 TGTAGGA 570 0.0 16.210207 2 >>END_MODULE