##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064068_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2778336 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.333285103025695 32.0 32.0 32.0 32.0 32.0 2 31.395964706932496 32.0 32.0 32.0 32.0 32.0 3 31.470250538451793 32.0 32.0 32.0 32.0 32.0 4 31.556898085760686 32.0 32.0 32.0 32.0 32.0 5 31.50252597238059 32.0 32.0 32.0 32.0 32.0 6 35.087942207134056 36.0 36.0 36.0 36.0 36.0 7 35.10525940706955 36.0 36.0 36.0 36.0 36.0 8 35.04551105409857 36.0 36.0 36.0 36.0 36.0 9 35.15543728332354 36.0 36.0 36.0 36.0 36.0 10 35.011319365260356 36.0 36.0 36.0 36.0 36.0 11 35.164747172408234 36.0 36.0 36.0 36.0 36.0 12 35.05888128721652 36.0 36.0 36.0 36.0 36.0 13 35.105361266599864 36.0 36.0 36.0 36.0 36.0 14 35.04747265989427 36.0 36.0 36.0 36.0 36.0 15 35.019959788880826 36.0 36.0 36.0 36.0 36.0 16 35.035086469023184 36.0 36.0 36.0 36.0 36.0 17 34.994683508402154 36.0 36.0 36.0 36.0 36.0 18 34.995486147103875 36.0 36.0 36.0 36.0 36.0 19 34.995912301463896 36.0 36.0 36.0 36.0 36.0 20 34.98830666989162 36.0 36.0 36.0 36.0 36.0 21 34.9846015744676 36.0 36.0 36.0 36.0 36.0 22 34.971432180988906 36.0 36.0 36.0 36.0 36.0 23 34.909663194084516 36.0 36.0 36.0 32.0 36.0 24 34.883249182244334 36.0 36.0 36.0 32.0 36.0 25 34.853555149557145 36.0 36.0 36.0 32.0 36.0 26 34.802143801181714 36.0 36.0 36.0 32.0 36.0 27 34.792197919906016 36.0 36.0 36.0 32.0 36.0 28 34.766216541123896 36.0 36.0 36.0 32.0 36.0 29 34.74537025039448 36.0 36.0 36.0 32.0 36.0 30 34.73019641972749 36.0 36.0 36.0 32.0 36.0 31 34.71840662900384 36.0 36.0 36.0 32.0 36.0 32 34.68317222970872 36.0 36.0 36.0 32.0 36.0 33 34.66412917660067 36.0 36.0 36.0 32.0 36.0 34 34.65224616461076 36.0 36.0 36.0 32.0 36.0 35 34.61853965827027 36.0 36.0 36.0 32.0 36.0 36 34.59553308167191 36.0 36.0 36.0 32.0 36.0 37 34.588274420372485 36.0 36.0 36.0 32.0 36.0 38 34.548414950531544 36.0 36.0 36.0 32.0 36.0 39 34.55214308132638 36.0 36.0 36.0 32.0 36.0 40 34.528472438178824 36.0 36.0 36.0 32.0 36.0 41 34.51698858597376 36.0 36.0 36.0 32.0 36.0 42 34.45706998721537 36.0 36.0 36.0 32.0 36.0 43 34.43917906257558 36.0 36.0 36.0 32.0 36.0 44 34.381438026214255 36.0 36.0 36.0 32.0 36.0 45 34.36263396507838 36.0 36.0 36.0 32.0 36.0 46 34.34428161316702 36.0 36.0 36.0 32.0 36.0 47 34.317296396116234 36.0 36.0 36.0 32.0 36.0 48 34.28059385185953 36.0 36.0 36.0 32.0 36.0 49 34.26580550372597 36.0 36.0 36.0 32.0 36.0 50 33.65537789525817 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 6.0 19 8.0 20 22.0 21 83.0 22 328.0 23 941.0 24 2358.0 25 5261.0 26 10707.0 27 19201.0 28 31351.0 29 48365.0 30 69619.0 31 98775.0 32 142502.0 33 230240.0 34 482305.0 35 1636263.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.69067601224015 17.863258354448107 11.787099753749994 26.65896587956175 2 16.171811618667668 19.996062371460184 36.657270107640514 27.174855902231638 3 17.95398952749931 23.705910469765225 28.860060957613292 29.48003904512217 4 12.165951130460822 15.907075314144869 35.87838188037732 36.048591675016986 5 14.344773274362785 36.61015082409039 33.41161760132684 15.633458300219989 6 34.63879380779101 35.81809936184687 16.384626736204844 13.158480094157282 7 30.688379910989855 30.39835009097175 20.480719567654727 18.432550430383664 8 28.385803588910775 32.796969121085425 18.918554127362565 19.898673162641238 9 27.278342211054735 13.890889510611334 18.21529185261651 40.615476425717425 10 15.442619634734916 26.68689718321671 31.533294868717 26.33718831333137 11 37.41283898449971 20.885062456471232 22.453951737281503 19.248146821747557 12 24.777699433437245 23.367645275062422 28.73751994451349 23.117135346986846 13 29.396736591367016 19.40585000586685 25.18556164476256 26.011851758003573 14 23.7946896157044 19.247569583166865 25.08524905248837 31.872491748640368 15 25.450299419733664 27.07145291909494 21.93670234075431 25.541545320417093 16 26.101522758594875 25.738352734195175 23.265413220180736 24.894711287029214 17 24.26755592828079 25.846955100806777 24.82227665130375 25.063212319608684 18 25.03276247502547 24.94339227399471 25.660477459309206 24.363367791670612 19 25.71528425647582 24.723539557490525 25.193929028022527 24.367247158011125 20 26.079260271063575 24.103062467718743 24.619742541792416 25.197934719425263 21 26.972259654699794 24.134517927277336 24.292310217338724 24.60091220068415 22 26.139225881409505 24.054199387114725 24.783773297234962 25.02280143424081 23 24.726911618669316 23.924950140606907 25.202667949939407 26.145470290784374 24 24.87886590702459 24.774414521550025 24.992207537920315 25.354512033505067 25 25.03315882582663 24.24328590016539 25.204198978150266 25.51935629585771 26 25.026384217558572 24.939996602087124 25.22165622336382 24.811962956990484 27 25.497234864464446 24.588685189211294 24.64498136179146 25.269098584532806 28 25.028417414565986 24.296043590406253 25.484391838532932 25.191147156494825 29 24.87772940224543 24.58538857358408 25.301735184273344 25.235146839897144 30 24.85892137390677 24.699359810066667 25.454046773530564 24.987672042495998 31 25.340697535459178 24.443617347533802 24.571293433986387 25.64439168302063 32 25.230711862039723 24.563457055145165 24.416745943218192 25.789085139596917 33 24.79134984153494 24.401207249978853 24.94608948551498 25.861353422971224 34 25.479102965339877 24.38032369122456 25.19777631003522 24.94279703340034 35 25.9931712949632 24.123879879291877 25.202463977609103 24.68048484813582 36 24.915284863869058 24.708635364600845 24.85423669268653 25.52184307884357 37 25.89279800966946 24.426901713031885 24.716402373883824 24.963897903414832 38 25.11733700873508 24.228315015717524 25.103514656912314 25.550833318635085 39 25.634634337023716 24.407227089057933 24.484542947375544 25.473595626542807 40 25.784022917883703 24.480224542853513 24.91542389554352 24.820328643719268 41 24.712434540321794 24.95021123107928 25.379584247132264 24.95776998146666 42 25.942153606050343 24.752068629289464 24.95420742766501 24.35157033699518 43 25.419357764615434 23.81884435639687 25.143937147085836 25.617860731901853 44 24.92116550869978 24.610722642604856 24.8449315387996 25.623180309895766 45 25.145457706315987 24.67671766069815 24.86658203454704 25.311242598438827 46 24.982957240851082 24.544596599510637 24.892506440975186 25.5799397186631 47 25.05668073171864 24.465127897430104 25.27667287794143 25.201518492909823 48 25.84578073355167 24.924350976913505 24.287448650987244 24.942419638547584 49 25.069691320987513 24.972042487500552 24.601531211453818 25.356734980058114 50 25.159800669832865 25.004922065791913 24.61133676828138 25.223940496093846 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 20.0 1 37.5 2 55.0 3 178.5 4 302.0 5 354.5 6 407.0 7 383.0 8 359.0 9 473.5 10 588.0 11 908.0 12 1228.0 13 2278.0 14 3328.0 15 4372.0 16 5416.0 17 5235.5 18 5055.0 19 5139.5 20 5224.0 21 6281.0 22 7338.0 23 8846.5 24 10355.0 25 13172.5 26 15990.0 27 19643.0 28 23296.0 29 27322.0 30 31348.0 31 35475.0 32 39602.0 33 45775.0 34 51948.0 35 60013.0 36 68078.0 37 81575.5 38 95073.0 39 105845.5 40 116618.0 41 128655.5 42 140693.0 43 146514.5 44 152336.0 45 167365.0 46 182394.0 47 194229.5 48 206065.0 49 213275.0 50 220485.0 51 215662.5 52 210840.0 53 209009.5 54 207179.0 55 206981.5 56 206784.0 57 201068.5 58 195353.0 59 178534.5 60 161716.0 61 142315.0 62 122914.0 63 107753.5 64 92593.0 65 78117.5 66 63642.0 67 54394.0 68 45146.0 69 40139.0 70 35132.0 71 26984.5 72 18837.0 73 16134.0 74 13431.0 75 10448.5 76 7466.0 77 6334.0 78 5202.0 79 4255.0 80 3308.0 81 2747.5 82 2187.0 83 1796.5 84 1406.0 85 1090.0 86 774.0 87 556.0 88 338.0 89 264.5 90 191.0 91 145.5 92 100.0 93 88.0 94 76.0 95 69.0 96 62.0 97 46.0 98 30.0 99 29.0 100 28.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.009538083226794742 2 5.03898736509911E-4 3 4.319132027227808E-4 4 0.0 5 0.0 6 2.159566013613904E-4 7 3.599276689356507E-5 8 0.0 9 0.0011877613074876472 10 8.998191723391266E-4 11 3.599276689356507E-5 12 1.079783006806952E-4 13 5.03898736509911E-4 14 2.159566013613904E-4 15 0.004643066929269894 16 8.278336385519967E-4 17 3.599276689356507E-5 18 1.7996383446782535E-4 19 0.0 20 7.558481047648664E-4 21 0.0 22 7.198553378713013E-5 23 8.278336385519967E-4 24 3.599276689356507E-4 25 0.0014757034426361678 26 0.005758842702970411 27 0.006190755905693192 28 0.003959204358292157 29 0.002591479216336685 30 0.0035272911555693765 31 0.007630466581435794 32 0.0031313707197401608 33 0.004355124794121373 34 0.00255548644944312 35 0.0023035370811881643 36 0.007270538912500144 37 0.003743247756930767 38 0.008170358084839272 39 0.0043911175610149384 40 0.00248350091565599 41 0.003563283922462942 42 0.0016916600439975584 43 0.0014397106757426028 44 0.0016916600439975584 45 0.0013317323750619077 46 0.001079783006806952 47 0.0019796021791460786 48 0.0016196745102104281 49 4.679059696163459E-4 50 0.0011157757737005171 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2778336.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.50103301189747 #Duplication Level Percentage of deduplicated Percentage of total 1 69.67783408230397 30.310577606118194 2 15.35320402908793 13.357604706155026 3 5.892666443171124 7.690112324174625 4 2.9469422064802795 5.127801208330104 5 1.5789009296211545 3.434191073098272 6 1.0091251749494816 2.6338792529168527 7 0.6369461581760789 1.9395471097533212 8 0.4531455972005529 1.5769841266413798 9 0.3482977811454224 1.3636181948019899 >10 1.8707072329452172 14.846670890734142 >50 0.1359488814632974 4.089898952990407 >100 0.08064484958514441 6.972394030589875 >500 0.010563045221091312 3.2049456141875576 >1k 0.005073588649489871 3.4517749095082366 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.599276689356507E-5 2 0.0 0.0 0.0 0.0 3.599276689356507E-5 3 0.0 0.0 0.0 0.0 3.599276689356507E-5 4 0.0 0.0 0.0 0.0 3.599276689356507E-5 5 0.0 0.0 0.0 0.0 3.599276689356507E-5 6 0.0 0.0 0.0 0.0 7.198553378713013E-5 7 0.0 0.0 0.0 0.0 1.079783006806952E-4 8 0.0 0.0 0.0 0.0 1.079783006806952E-4 9 0.0 0.0 0.0 0.0 1.079783006806952E-4 10 0.0 0.0 0.0 0.0 1.079783006806952E-4 11 0.0 0.0 0.0 0.0 1.079783006806952E-4 12 0.0 0.0 0.0 0.0 1.7996383446782535E-4 13 0.0 0.0 0.0 0.0 1.7996383446782535E-4 14 0.0 0.0 0.0 0.0 1.7996383446782535E-4 15 0.0 0.0 0.0 0.0 3.599276689356507E-4 16 0.0 0.0 0.0 0.0 3.599276689356507E-4 17 0.0 0.0 0.0 0.0 3.599276689356507E-4 18 0.0 0.0 0.0 0.0 4.319132027227808E-4 19 0.0 0.0 0.0 0.0 4.319132027227808E-4 20 0.0 0.0 0.0 7.198553378713013E-5 5.758842702970411E-4 21 0.0 0.0 0.0 1.4397106757426027E-4 6.838625709777363E-4 22 0.0 0.0 0.0 2.8794213514852054E-4 7.198553378713014E-4 23 0.0 0.0 0.0 4.679059696163459E-4 7.198553378713014E-4 24 0.0 0.0 0.0 6.478698040841712E-4 7.198553378713014E-4 25 0.0 0.0 0.0 6.838625709777363E-4 7.198553378713014E-4 26 0.0 0.0 0.0 9.358119392326918E-4 8.278336385519966E-4 27 0.0 0.0 0.0 0.0011877613074876472 8.638264054455616E-4 28 0.0 0.0 0.0 0.002519493682549555 8.638264054455616E-4 29 0.0 0.0 0.0 0.00511097289888624 8.638264054455616E-4 30 0.0 0.0 0.0 0.010617866233601695 8.638264054455616E-4 31 0.0 0.0 0.0 0.0247270308558792 8.638264054455616E-4 32 0.0 0.0 0.0 0.040563848289047834 8.998191723391267E-4 33 0.0 0.0 0.0 0.05661662232357785 8.998191723391267E-4 34 0.0 0.0 0.0 0.07497293343929604 0.001043790239913387 35 0.0 0.0 0.0 0.09865617405526185 0.001043790239913387 36 0.0 0.0 0.0 0.13227341833385162 0.001043790239913387 37 0.0 0.0 0.0 0.1799278417009318 0.001043790239913387 38 0.0 0.0 0.0 0.24968182394066088 0.001079783006806952 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 3390 0.0 29.6596 1 GGTATCA 1325 0.0 24.409016 1 TCAACGC 5270 0.0 18.742262 4 TATCAAC 5360 0.0 18.633102 2 CAACGCA 5355 0.0 18.444767 5 ATCAACG 5365 0.0 18.369383 3 GTATACG 120 3.163641E-7 18.334436 1 CGCAATA 655 0.0 18.138823 36 AACGCAG 5485 0.0 18.087818 6 CTAGCGG 680 0.0 17.14809 29 TTAGTAC 210 9.094947E-12 16.7605 3 TCTAGCG 705 0.0 16.540003 28 TAGCGGC 705 0.0 16.228512 30 TAAACGC 505 0.0 16.119781 28 ATACGAA 720 0.0 15.888128 40 GGCGTTA 755 0.0 15.442969 42 ACGCAGA 6485 0.0 15.29864 7 TACGACG 835 0.0 15.280155 5 ACGACGG 850 0.0 15.269308 6 GTAAACG 510 0.0 15.09949 27 >>END_MODULE