Basic Statistics
Measure | Value |
---|---|
Filename | SRR4064067_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1339632 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTT | 4360 | 0.3254625150787679 | No Hit |
TATCAACGCAGAGTACTTTTTTTTT | 3216 | 0.2400659285535132 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTT | 3199 | 0.23879692333416938 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTT | 2032 | 0.15168344739450834 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTT | 1732 | 0.12928923764138212 | No Hit |
GTACATGGGGTGGTATCAACGCAAA | 1652 | 0.12331744837388177 | No Hit |
GGTATCAACGCAGAGTACTTTTTTT | 1595 | 0.1190625485207878 | No Hit |
GTCCTAAAGTGTGTATTTCTCATTT | 1557 | 0.11622594861872514 | No Hit |
GTCCTACAGTGGACATTTCTAAATT | 1404 | 0.10480490164463076 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGAACGA | 65 | 1.9103936E-7 | 16.078629 | 16 |
CGTCTTA | 50 | 8.7046195E-5 | 15.201614 | 15 |
ACGAACG | 70 | 4.429312E-7 | 14.930156 | 15 |
AATCGTA | 45 | 6.761765E-4 | 14.777691 | 13 |
GCGTTAT | 80 | 1.2868622E-7 | 14.250979 | 1 |
CGCGGTC | 85 | 2.695815E-7 | 13.412687 | 10 |
TAGACTG | 80 | 2.0023017E-6 | 13.060472 | 5 |
CGAGGTT | 80 | 2.004821E-6 | 13.059009 | 4 |
AACGAAC | 95 | 7.3805495E-8 | 13.000408 | 14 |
GTCTAGA | 140 | 3.6379788E-12 | 12.893744 | 1 |
CGTAAAT | 60 | 4.0877078E-4 | 12.668011 | 16 |
GGCTTAG | 60 | 4.088996E-4 | 12.667538 | 1 |
AAGACGG | 135 | 2.7284841E-11 | 12.6647005 | 5 |
ATTTAGA | 285 | 0.0 | 12.334182 | 1 |
CGATAAC | 85 | 3.9391307E-6 | 12.294963 | 10 |
AACCGCG | 85 | 3.942423E-6 | 12.294045 | 7 |
ACACCGT | 85 | 3.9457154E-6 | 12.293127 | 6 |
CGAACGT | 55 | 0.003074212 | 12.087679 | 4 |
ACTGTTC | 505 | 0.0 | 12.039983 | 8 |
AGGCCCG | 150 | 1.4551915E-11 | 12.034162 | 10 |