FastQCFastQC Report
Thu 2 Feb 2017
SRR4064067_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4064067_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1339632
Sequences flagged as poor quality0
Sequence length50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACGAAC500.002580416222.00024228
TTACGGT500.002580416222.00024221
GTATTAC1800.021.9994221
TAGGACG9950.020.5607384
TTAGGAC6600.020.3312823
TGTAGGA12050.019.3507442
AGGACGT10350.019.1285045
CTGTAGG12350.018.8820951
GCGAGAA7700.018.85664620
GGACGTG10300.018.3670776
CCGATTA600.007412038718.3335349
TCGAACT1203.1647141E-718.33216719
GTAGGAC12000.018.1481673
CGTCTTA1701.2732926E-1018.11852515
TACGGAA851.430858E-418.11784737
GTATTAT1355.5284545E-817.9254551
ACGGAAA7650.017.83026138
TATGGCG14200.017.66084916
GATATAC5000.017.5995371
GTCCTAT4400.017.4995381
Produced by FastQC (version 0.11.5)