##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064059_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1873403 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.3509244940891 32.0 32.0 32.0 32.0 32.0 2 31.418171637389285 32.0 32.0 32.0 32.0 32.0 3 31.490327494938356 32.0 32.0 32.0 32.0 32.0 4 31.57279186592527 32.0 32.0 32.0 32.0 32.0 5 31.526297331647275 32.0 32.0 32.0 32.0 32.0 6 35.118782237457715 36.0 36.0 36.0 36.0 36.0 7 35.138977571830516 36.0 36.0 36.0 36.0 36.0 8 35.085472266244906 36.0 36.0 36.0 36.0 36.0 9 35.18951608383247 36.0 36.0 36.0 36.0 36.0 10 35.04803451259553 36.0 36.0 36.0 36.0 36.0 11 35.1907528705783 36.0 36.0 36.0 36.0 36.0 12 35.09942228127103 36.0 36.0 36.0 36.0 36.0 13 35.13697319797182 36.0 36.0 36.0 36.0 36.0 14 35.07948102997593 36.0 36.0 36.0 36.0 36.0 15 35.06157404466631 36.0 36.0 36.0 36.0 36.0 16 35.06856239687883 36.0 36.0 36.0 36.0 36.0 17 35.03247619439063 36.0 36.0 36.0 36.0 36.0 18 35.03609687824777 36.0 36.0 36.0 36.0 36.0 19 35.0304776921997 36.0 36.0 36.0 36.0 36.0 20 35.025056007703625 36.0 36.0 36.0 36.0 36.0 21 35.02490654706969 36.0 36.0 36.0 36.0 36.0 22 35.00036831370506 36.0 36.0 36.0 36.0 36.0 23 34.95764125497824 36.0 36.0 36.0 36.0 36.0 24 34.9321443384045 36.0 36.0 36.0 36.0 36.0 25 34.90528893142586 36.0 36.0 36.0 32.0 36.0 26 34.84406345030941 36.0 36.0 36.0 32.0 36.0 27 34.840657349219576 36.0 36.0 36.0 32.0 36.0 28 34.82008516053406 36.0 36.0 36.0 32.0 36.0 29 34.79157287567064 36.0 36.0 36.0 32.0 36.0 30 34.7743368618498 36.0 36.0 36.0 32.0 36.0 31 34.77257803046115 36.0 36.0 36.0 32.0 36.0 32 34.73119611743976 36.0 36.0 36.0 32.0 36.0 33 34.712345394984425 36.0 36.0 36.0 32.0 36.0 34 34.699294278913825 36.0 36.0 36.0 32.0 36.0 35 34.6623385358089 36.0 36.0 36.0 32.0 36.0 36 34.64173271848075 36.0 36.0 36.0 32.0 36.0 37 34.631715119491105 36.0 36.0 36.0 32.0 36.0 38 34.58769789522062 36.0 36.0 36.0 32.0 36.0 39 34.58854074643843 36.0 36.0 36.0 32.0 36.0 40 34.570540348232605 36.0 36.0 36.0 32.0 36.0 41 34.547123603410476 36.0 36.0 36.0 32.0 36.0 42 34.49285231207594 36.0 36.0 36.0 32.0 36.0 43 34.47770981470618 36.0 36.0 36.0 32.0 36.0 44 34.426275072688576 36.0 36.0 36.0 32.0 36.0 45 34.39674218521055 36.0 36.0 36.0 32.0 36.0 46 34.38181320303213 36.0 36.0 36.0 32.0 36.0 47 34.3467187786077 36.0 36.0 36.0 32.0 36.0 48 34.306521874898245 36.0 36.0 36.0 32.0 36.0 49 34.28368162109274 36.0 36.0 36.0 32.0 36.0 50 33.696487621723676 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 5.0 20 13.0 21 59.0 22 181.0 23 511.0 24 1435.0 25 3164.0 26 6596.0 27 11870.0 28 20369.0 29 31234.0 30 45494.0 31 64891.0 32 94055.0 33 151986.0 34 319876.0 35 1121663.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.54726001912192 17.898211817687294 11.789661031697436 26.764867131493354 2 15.880971050922044 20.347359043190615 37.29607188667835 26.475598019208995 3 18.0786997744206 24.4594581610528 28.80749312212354 28.654348942403058 4 12.324150222883171 16.159363468511582 35.88080087413119 35.635685434474055 5 14.263508705815035 36.84850510007724 33.54425075651101 15.343735437596715 6 34.29897512544038 35.782854702679614 16.67513611615245 13.243034055727554 7 30.04710147635158 30.49014573487164 21.092910117529502 18.369842671247284 8 27.895439475649393 33.41299229263538 19.29686244764207 19.394705784073153 9 27.61239601660318 14.010641750508174 18.170991835061407 40.20597039782724 10 15.726814634510882 26.823175223393015 31.938261324450995 25.511748817645113 11 37.291035239633565 20.89903822030723 22.70628514328478 19.103641396774425 12 24.90442521146022 23.425137797440165 28.99409736938468 22.676339621714934 13 29.67151046256712 19.577899565120614 25.137170897937594 25.613419074374676 14 23.61425602034378 19.52089198344399 25.251121224641 31.61373077157123 15 24.966196757557753 27.400403877350684 22.206047911191824 25.427351453899742 16 25.62365418059415 25.67479131458732 23.87693138763122 24.824623117187308 17 24.04634774258395 25.99590157590225 25.218332627843555 24.739418053670246 18 24.870035416983605 24.97113529180979 26.13026083660947 24.028568454597135 19 25.754656904741697 24.838408861743964 25.25044024210513 24.156493991409207 20 25.97367450396153 24.3625336488393 24.90668001855457 24.757111828644604 21 26.71534101311891 24.171147371921577 24.505725676749744 24.607785938209773 22 26.00472295855348 24.38889250678712 24.833858403054975 24.772526131604426 23 24.637541909341838 24.31417073549594 25.490327956446844 25.557959398715376 24 25.104449520202117 24.8198322508945 25.223858528349364 24.851859700554023 25 25.07666660794899 24.502514451221888 25.37271047752954 25.048108463299577 26 24.798428855421815 25.22986370459578 25.536971436258465 24.43473600372394 27 25.271407378778843 24.921274911372553 24.795934000643786 25.011383709204814 28 24.621462647511464 24.742423781407325 25.56219436094781 25.073919210133404 29 24.80106589286944 24.868591658085823 25.28143297680797 25.04890947223677 30 24.729813840321395 24.975097926802317 25.532818957390496 24.76226927548579 31 25.374281664802712 24.681263362435974 24.724770519763727 25.219684452997587 32 25.018776533363514 24.90539669863971 24.604491741795044 25.471335026201736 33 24.578357115442206 24.675723992661187 25.268145924336753 25.477772967559854 34 25.30159713028996 24.624418157748647 25.350973651620617 24.723011060340777 35 25.54487833052376 24.68342875932685 25.263351187228896 24.508341722920495 36 24.788432250008942 25.151005430590352 25.082195532214403 24.978366787186303 37 25.4623564994678 24.87789176325895 24.832838494708376 24.826913242564878 38 24.82031286700803 24.921687158615804 25.24246552526723 25.015534449108934 39 25.524480190633692 24.630084058823563 24.717575271001227 25.127860479541525 40 25.692070521265485 24.76197898539739 25.218750867423523 24.327199625913597 41 24.92043580148719 24.992927033677994 25.465828231011088 24.620808933823728 42 25.653714962874393 25.327831661657868 24.902822186754353 24.115631188713387 43 25.04413143936017 24.592114471108655 25.211155659206536 25.152598430324634 44 24.806098929313787 25.104757288705216 24.767078507380784 25.322065274600213 45 24.868980551792315 25.282082816888778 24.863856140699248 24.98508049061966 46 24.86579106803994 24.816788860805442 25.039167069235635 25.278253001918987 47 25.160673526340847 24.75749507303439 25.16611827706735 24.91571312355741 48 25.573604402326712 25.285247518780295 24.45161748354439 24.689530595348604 49 25.008447212793435 25.25265573430967 24.598657306852413 25.14023974604449 50 24.94017520138658 25.558146821772542 24.60676838261395 24.894909594226927 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 23.0 1 28.0 2 33.0 3 95.0 4 157.0 5 200.0 6 243.0 7 243.0 8 243.0 9 320.5 10 398.0 11 607.5 12 817.0 13 1577.5 14 2338.0 15 3142.0 16 3946.0 17 4162.5 18 4379.0 19 4484.0 20 4589.0 21 5075.0 22 5561.0 23 6617.5 24 7674.0 25 9061.5 26 10449.0 27 13075.0 28 15701.0 29 18670.5 30 21640.0 31 25356.5 32 29073.0 33 34642.5 34 40212.0 35 46880.5 36 53549.0 37 61835.5 38 70122.0 39 75864.5 40 81607.0 41 89502.0 42 97397.0 43 100704.0 44 104011.0 45 113842.0 46 123673.0 47 131289.0 48 138905.0 49 143443.0 50 147981.0 51 144624.5 52 141268.0 53 139700.5 54 138133.0 55 137772.5 56 137412.0 57 132235.5 58 127059.0 59 116069.5 60 105080.0 61 91907.0 62 78734.0 63 68006.0 64 57278.0 65 48310.0 66 39342.0 67 33766.5 68 28191.0 69 25050.0 70 21909.0 71 16980.0 72 12051.0 73 10304.5 74 8558.0 75 6692.0 76 4826.0 77 4183.5 78 3541.0 79 2887.5 80 2234.0 81 1801.5 82 1369.0 83 1149.0 84 929.0 85 653.0 86 377.0 87 272.0 88 167.0 89 125.0 90 83.0 91 63.5 92 44.0 93 39.0 94 34.0 95 35.0 96 36.0 97 28.0 98 20.0 99 13.5 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.00854060765355879 2 5.337879783474244E-4 3 2.668939891737122E-4 4 0.0 5 0.0 6 1.6013639350422732E-4 7 5.337879783474244E-5 8 0.0 9 0.001441227541538046 10 0.0012277123501990763 11 5.337879783474244E-5 12 5.337879783474244E-5 13 5.337879783474244E-4 14 2.668939891737122E-4 15 0.0033094854657540313 16 4.8040918051268206E-4 17 0.0 18 4.2703038267793953E-4 19 1.0675759566948488E-4 20 5.337879783474244E-4 21 0.0 22 5.337879783474244E-5 23 7.473031696863942E-4 24 5.337879783474244E-4 25 0.0017081215307117581 26 0.006352076942334351 27 0.005978425357491154 28 0.003950031039770941 29 0.0023486671047286676 30 0.0034696218592582587 31 0.007900062079541883 32 0.002882455083076092 33 0.004056788635440426 34 0.002295288306893925 35 0.0026155610939023795 36 0.0067257285271775475 37 0.0034696218592582587 38 0.00784668328170714 39 0.0038432734441014565 40 0.0020817731155549552 41 0.003896652241936199 42 0.0017615003285465006 43 0.0011743335523643338 44 0.001334469945868561 45 9.074395631906215E-4 46 9.608183610253641E-4 47 0.0020817731155549552 48 0.0016013639350422734 49 2.1351519133896977E-4 50 8.540607653558791E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1873403.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.696408794924245 #Duplication Level Percentage of deduplicated Percentage of total 1 78.61957542936483 46.1468673868538 2 13.023943404364797 15.28917412369107 3 3.8404671132977097 6.76264882936755 4 1.5605763277952889 3.664009043678159 5 0.8384062366685726 2.460571760185627 6 0.49715706638315443 1.7508800642226554 7 0.3283293995084935 1.3490229657059774 8 0.21913476708271834 1.0289939095894196 9 0.16415264698845475 0.8671653785162906 >10 0.7930731909458153 8.138006358255748 >50 0.055887606399275806 2.3065279634978055 >100 0.05106219616026218 6.289642086293881 >500 0.00622170914185387 2.4429732534534265 >1k 0.002012905898835075 1.503516876688477 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 5.337879783474244E-5 7 0.0 0.0 0.0 0.0 5.337879783474244E-5 8 0.0 0.0 0.0 0.0 5.337879783474244E-5 9 0.0 0.0 0.0 0.0 5.337879783474244E-5 10 0.0 0.0 0.0 0.0 5.337879783474244E-5 11 0.0 0.0 0.0 0.0 5.337879783474244E-5 12 0.0 0.0 0.0 0.0 1.0675759566948488E-4 13 0.0 0.0 0.0 0.0 1.6013639350422734E-4 14 0.0 0.0 0.0 0.0 1.6013639350422734E-4 15 0.0 0.0 0.0 0.0 2.668939891737122E-4 16 0.0 0.0 0.0 0.0 3.202727870084547E-4 17 0.0 0.0 0.0 0.0 3.202727870084547E-4 18 0.0 0.0 0.0 5.337879783474244E-5 3.202727870084547E-4 19 0.0 0.0 0.0 5.337879783474244E-5 3.202727870084547E-4 20 0.0 0.0 0.0 5.337879783474244E-5 4.2703038267793953E-4 21 0.0 0.0 0.0 5.337879783474244E-5 4.2703038267793953E-4 22 0.0 0.0 0.0 5.337879783474244E-5 4.2703038267793953E-4 23 0.0 0.0 0.0 1.0675759566948488E-4 4.80409180512682E-4 24 0.0 0.0 0.0 2.1351519133896977E-4 5.337879783474244E-4 25 0.0 0.0 0.0 3.736515848431971E-4 5.337879783474244E-4 26 0.0 0.0 0.0 4.2703038267793953E-4 5.871667761821669E-4 27 0.0 0.0 0.0 5.871667761821669E-4 5.871667761821669E-4 28 0.0 0.0 0.0 0.0012810911480338188 5.871667761821669E-4 29 0.0 0.0 0.0 0.003095970274415062 5.871667761821669E-4 30 0.0 0.0 0.0 0.005925046559656411 5.871667761821669E-4 31 0.0 0.0 0.0 0.014358896617545717 5.871667761821669E-4 32 0.0 0.0 0.0 0.022365716292757083 6.405455740169094E-4 33 0.0 0.0 0.0 0.032240793892184434 6.405455740169094E-4 34 0.0 0.0 0.0 0.045105084170357364 8.006819675211367E-4 35 0.0 0.0 0.0 0.06021128395758948 8.006819675211367E-4 36 0.0 0.0 0.0 0.0801215755499484 8.006819675211367E-4 37 0.0 0.0 0.0 0.1130562938139845 8.006819675211367E-4 38 0.0 0.0 0.0 0.15816137798434185 8.006819675211367E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 2845 0.0 23.58628 1 TAGGACG 480 0.0 18.790995 4 AACGCAG 3825 0.0 17.656885 6 TGTAGGA 710 0.0 17.042099 2 GTGTATA 325 0.0 16.923826 1 CGAGCCG 555 0.0 16.648052 15 AGGACGT 550 0.0 16.399412 5 TTAGGAC 405 0.0 16.295713 3 CGTTTAT 530 0.0 16.188963 31 TCAACGC 4145 0.0 16.081451 4 ATCAACG 4190 0.0 15.908738 3 TATCAAC 4325 0.0 15.870377 2 CAACGCA 4230 0.0 15.810309 5 ATAACGC 555 0.0 15.458906 3 GGTATCA 1455 0.0 15.423363 1 ACGCAGA 4395 0.0 15.316858 7 TCGTTTA 550 0.0 15.200267 30 CGCAGAG 4460 0.0 15.192282 8 CAATACG 485 0.0 14.969736 38 GTAGGAC 735 0.0 14.96545 3 >>END_MODULE