FastQCFastQC Report
Thu 2 Feb 2017
SRR4064056_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4064056_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1695212
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCCTAC5950.019.5965081
GTATCAA30150.019.0446471
TATACTG2550.018.9797065
TAGGACG3250.018.9531614
TACGACG4300.018.4179385
CGACGGT4350.018.2062387
GACGGTA4650.017.5047428
ATTATAC2400.017.4160373
ACGACGG4550.017.4059626
ATCGTTT3950.017.26621629
CTACGAC4650.017.0316414
CGAGCCG5450.016.95451515
CGCAATA5350.016.86069336
ACGGTAT4800.016.5008649
GTCCTAT5100.016.3920461
TTAACGG1351.0854837E-616.29714835
ATACGAA5600.016.10703740
GTATTAC2051.05501385E-1016.0974521
GTATAAA3150.016.0633851
CGTTTAT4400.016.00083731
Produced by FastQC (version 0.11.5)