##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064055_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1445689 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.281739710269637 32.0 32.0 32.0 32.0 32.0 2 31.403770797176985 32.0 32.0 32.0 32.0 32.0 3 31.477795708482255 32.0 32.0 32.0 32.0 32.0 4 31.557432476832847 32.0 32.0 32.0 32.0 32.0 5 31.519572328488355 32.0 32.0 32.0 32.0 32.0 6 35.09615899408517 36.0 36.0 36.0 36.0 36.0 7 35.11116844632559 36.0 36.0 36.0 36.0 36.0 8 35.0585699967282 36.0 36.0 36.0 36.0 36.0 9 35.18139447695874 36.0 36.0 36.0 36.0 36.0 10 35.021960463142484 36.0 36.0 36.0 36.0 36.0 11 35.164879860052885 36.0 36.0 36.0 36.0 36.0 12 35.069158719475624 36.0 36.0 36.0 36.0 36.0 13 35.12053491449406 36.0 36.0 36.0 36.0 36.0 14 35.05934955581733 36.0 36.0 36.0 36.0 36.0 15 35.03231538733434 36.0 36.0 36.0 36.0 36.0 16 35.046698148771966 36.0 36.0 36.0 36.0 36.0 17 35.00595771289676 36.0 36.0 36.0 36.0 36.0 18 35.00003942756706 36.0 36.0 36.0 36.0 36.0 19 35.00282080032427 36.0 36.0 36.0 36.0 36.0 20 34.99667286670923 36.0 36.0 36.0 36.0 36.0 21 34.991794915780645 36.0 36.0 36.0 36.0 36.0 22 34.972352283236575 36.0 36.0 36.0 36.0 36.0 23 34.92396497448621 36.0 36.0 36.0 32.0 36.0 24 34.89906335318315 36.0 36.0 36.0 32.0 36.0 25 34.864867893440426 36.0 36.0 36.0 32.0 36.0 26 34.810477910532626 36.0 36.0 36.0 32.0 36.0 27 34.80082299858407 36.0 36.0 36.0 32.0 36.0 28 34.783663014659446 36.0 36.0 36.0 32.0 36.0 29 34.74688539512994 36.0 36.0 36.0 32.0 36.0 30 34.7366570541797 36.0 36.0 36.0 32.0 36.0 31 34.7316545951446 36.0 36.0 36.0 32.0 36.0 32 34.678556729697746 36.0 36.0 36.0 32.0 36.0 33 34.647429703068916 36.0 36.0 36.0 32.0 36.0 34 34.63660510663082 36.0 36.0 36.0 32.0 36.0 35 34.58490864909396 36.0 36.0 36.0 32.0 36.0 36 34.57325607374754 36.0 36.0 36.0 32.0 36.0 37 34.564388329716834 36.0 36.0 36.0 32.0 36.0 38 34.51993132686214 36.0 36.0 36.0 32.0 36.0 39 34.52053795802555 36.0 36.0 36.0 32.0 36.0 40 34.504987587233494 36.0 36.0 36.0 32.0 36.0 41 34.48171218014386 36.0 36.0 36.0 32.0 36.0 42 34.4172799267339 36.0 36.0 36.0 32.0 36.0 43 34.41325139777642 36.0 36.0 36.0 32.0 36.0 44 34.34490751468677 36.0 36.0 36.0 32.0 36.0 45 34.31311021941787 36.0 36.0 36.0 32.0 36.0 46 34.285604303553534 36.0 36.0 36.0 32.0 36.0 47 34.252216071368046 36.0 36.0 36.0 32.0 36.0 48 34.20140016282893 36.0 36.0 36.0 32.0 36.0 49 34.17322397832452 36.0 36.0 36.0 32.0 36.0 50 33.58141135472429 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 2.0 17 1.0 18 3.0 19 0.0 20 14.0 21 58.0 22 187.0 23 501.0 24 1305.0 25 2810.0 26 5652.0 27 10235.0 28 17346.0 29 26077.0 30 36815.0 31 51442.0 32 74295.0 33 119959.0 34 246321.0 35 852665.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.514985320445945 18.050801495349862 11.860830633088627 26.573382551115564 2 16.077809642784512 20.362776876242496 36.7767600343644 26.782653446608588 3 18.01695115734224 24.514641176523483 28.701243633631996 28.767164032502286 4 12.234374059704404 16.046743110032654 35.9056477568827 35.813235073380234 5 14.2891728442286 36.9380966445757 33.31110633061468 15.461624180581024 6 34.30293002565562 35.81037942514528 16.603732343169717 13.282958206029383 7 30.11260390388791 30.43632542867163 20.967194143683937 18.483876523756525 8 28.21332942285651 32.91517055189602 19.206136312858433 19.66536371238904 9 27.760315646469312 13.687236626943392 18.314232590055255 40.23821513653204 10 15.90459002944641 26.771816941128616 31.59869044053409 25.72490258889088 11 37.439821040224444 20.815487159055067 22.450418070842396 19.294273729878093 12 24.907051111340145 23.585949102399066 28.749791621561236 22.757208164699552 13 29.829886399558408 19.357313266204645 25.08651631999037 25.726284014246577 14 23.816151075578603 19.475100765241717 25.07707408311758 31.631674076062104 15 25.217190397759854 27.142798838699772 22.114994178972218 25.525016584568156 16 25.84903245888599 25.51403323706919 23.71667214277068 24.920262161274145 17 24.269327635473466 25.66630859057515 24.953084653753333 25.11127912019805 18 24.97508101695736 24.733949650165837 26.057889512583998 24.2330798202928 19 25.898585380396476 24.554105343542076 25.363269693550965 24.184039582510486 20 26.129316755148977 23.974406419146767 24.810832310166532 25.085444515537723 21 27.135435076285425 23.82594043393842 24.36070275142164 24.677921738354513 22 26.207729468599034 24.077670977416982 24.75665565460874 24.957943899375245 23 24.720252172511564 23.93342357940259 25.481418048429905 25.86490619965594 24 25.132238350678055 24.65461009832709 25.141438141780544 25.07171340921432 25 25.107839420945886 24.17567518960093 25.301798199863317 25.414687189589863 26 24.910712741635912 24.9546386831902 25.564828809883682 24.569819765290205 27 25.50461990338913 24.59820986958293 24.756622368813353 25.140547858214585 28 24.809045719732655 24.39427960327441 25.519460665701 25.27721401129193 29 24.83635445524693 24.56471288101241 25.300365578232704 25.298567085507955 30 24.656619821973564 24.756368858378504 25.666699870229408 24.920311449418524 31 25.389688145718775 24.493507445805452 24.666448530312078 25.4503558781637 32 25.06526512096356 24.603601721588056 24.547709598918683 25.783423558529705 33 24.751073941104448 24.300399139463618 25.17553143655619 25.772995482875743 34 25.485892397756288 24.2991507561708 25.39264643524421 24.822310410828706 35 25.869214087829306 24.32678838857396 25.19131598698159 24.612681536615145 36 24.71177459410475 24.93106525453627 24.962609904743456 25.394550246615523 37 25.625119323982943 24.817589946072477 24.68173353882422 24.87555719112036 38 24.98241172136846 24.560293034211536 25.18018906102458 25.27710618339542 39 25.537016118265637 24.450497950024452 24.602888573608546 25.409597358101365 40 25.786049973506653 24.569638763570058 25.067755176578498 24.576556086344787 41 24.774649202599548 25.05355777910745 25.26439938158664 24.90739363670636 42 25.857119536044536 25.143740972956223 24.858265036772234 24.140874454227006 43 25.069864283441472 24.261928807603447 25.1833764508944 25.484830458060674 44 24.89292117670496 24.865044713017685 24.706363304336275 25.535670805941074 45 24.89636228687085 25.058087615284634 24.802080155721153 25.243469942123358 46 24.87154762629421 24.823403925648417 24.92557094555335 25.379477502504027 47 25.220609343169702 24.53393098630033 25.242122083069614 25.003337587460354 48 25.82118315673555 25.101925905020412 24.273168342720062 24.803722595523976 49 25.02362213438954 25.21488187549371 24.438637096227513 25.322858893889233 50 24.927507359939792 25.451003829382206 24.463844987493637 25.15764382318436 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 21.0 1 24.0 2 27.0 3 79.0 4 131.0 5 151.0 6 171.0 7 187.5 8 204.0 9 289.5 10 375.0 11 577.5 12 780.0 13 1424.5 14 2069.0 15 2818.5 16 3568.0 17 3993.5 18 4419.0 19 4633.0 20 4847.0 21 5260.5 22 5674.0 23 6259.0 24 6844.0 25 7723.0 26 8602.0 27 10593.5 28 12585.0 29 14760.0 30 16935.0 31 19416.0 32 21897.0 33 25424.0 34 28951.0 35 33544.5 36 38138.0 37 44817.0 38 51496.0 39 55761.5 40 60027.0 41 65190.5 42 70354.0 43 72727.5 44 75101.0 45 82968.5 46 90836.0 47 97307.0 48 103778.0 49 108155.0 50 112532.0 51 110225.5 52 107919.0 53 106890.0 54 105861.0 55 106967.5 56 108074.0 57 105131.0 58 102188.0 59 93309.0 60 84430.0 61 74469.5 62 64509.0 63 55954.0 64 47399.0 65 40163.0 66 32927.0 67 28201.5 68 23476.0 69 20981.5 70 18487.0 71 14309.5 72 10132.0 73 8741.0 74 7350.0 75 5758.0 76 4166.0 77 3657.0 78 3148.0 79 2674.5 80 2201.0 81 1738.0 82 1275.0 83 1097.5 84 920.0 85 668.0 86 416.0 87 293.5 88 171.0 89 137.0 90 103.0 91 80.5 92 58.0 93 53.0 94 48.0 95 42.0 96 36.0 97 25.0 98 14.0 99 16.5 100 19.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0097531350103653 2 4.8419819200395107E-4 3 4.150270217176723E-4 4 0.0 5 0.0 6 1.3834234057255744E-4 7 1.3834234057255744E-4 8 0.0 9 0.0014525945760118532 10 8.300540434353446E-4 11 6.917117028627872E-5 12 1.3834234057255744E-4 13 5.533693622902298E-4 14 1.3834234057255744E-4 15 0.004703639579466953 16 9.683963840079021E-4 17 0.0 18 2.766846811451149E-4 19 0.0 20 9.683963840079021E-4 21 0.0 22 6.917117028627872E-5 23 8.300540434353446E-4 24 2.766846811451149E-4 25 0.0014525945760118532 26 0.0051186666011846255 27 0.006640432347482757 28 0.00380441436574533 29 0.0023518197897334763 30 0.004219441387463002 31 0.00760882873149066 32 0.0032510450034551 33 0.00546452245261602 34 0.003458558514313936 35 0.0030435314925962636 36 0.008231369264067168 37 0.003112702662882543 38 0.008577225115498563 39 0.0042886125577492815 40 0.0029743603223099852 41 0.003735243195459051 42 0.002282648619447198 43 0.0020059639383020827 44 0.001729279257156968 45 0.0019367927680158043 46 0.0011759098948667382 47 0.0023518197897334763 48 0.0021443062788746407 49 7.608828731490659E-4 50 0.001729279257156968 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1445689.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.19883309009117 #Duplication Level Percentage of deduplicated Percentage of total 1 77.29822055299213 43.4406979501866 2 13.770627329590255 15.477863736829814 3 4.195990330938017 7.07429280768066 4 1.7250423142731501 3.877814603727255 5 0.8545348628659718 2.4011931063934346 6 0.49026608180509823 1.6531429020658621 7 0.3338988389253091 1.313530758241708 8 0.21387132364908626 0.9615455056409493 9 0.14937129450649972 0.7555043203579468 >10 0.8193301109739285 8.215862864047477 >50 0.07131826608061012 2.7572997545297424 >100 0.06837865443818533 7.961440486711855 >500 0.007295301334343383 2.832248702902812 >1k 0.0018547376273754367 1.2775625006837479 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 1515 0.10479432298371226 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 1455 0.10064405276653554 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 6.917117028627872E-5 2 0.0 0.0 0.0 0.0 6.917117028627872E-5 3 0.0 0.0 0.0 0.0 6.917117028627872E-5 4 0.0 0.0 0.0 0.0 6.917117028627872E-5 5 0.0 0.0 0.0 6.917117028627872E-5 6.917117028627872E-5 6 0.0 0.0 0.0 6.917117028627872E-5 2.0751351085883618E-4 7 0.0 0.0 0.0 6.917117028627872E-5 2.0751351085883618E-4 8 0.0 0.0 0.0 6.917117028627872E-5 2.0751351085883618E-4 9 0.0 0.0 0.0 6.917117028627872E-5 2.0751351085883618E-4 10 0.0 0.0 0.0 6.917117028627872E-5 2.0751351085883618E-4 11 0.0 0.0 0.0 6.917117028627872E-5 2.0751351085883618E-4 12 0.0 0.0 0.0 1.3834234057255744E-4 7.608828731490659E-4 13 0.0 0.0 0.0 1.3834234057255744E-4 0.0010375675542941807 14 0.0 0.0 0.0 1.3834234057255744E-4 0.0010375675542941807 15 0.0 0.0 0.0 2.0751351085883618E-4 0.0010375675542941807 16 0.0 0.0 0.0 2.0751351085883618E-4 0.0011759098948667384 17 0.0 0.0 0.0 2.766846811451149E-4 0.0011759098948667384 18 0.0 0.0 0.0 2.766846811451149E-4 0.0011759098948667384 19 0.0 0.0 0.0 2.766846811451149E-4 0.0011759098948667384 20 0.0 1.3834234057255744E-4 0.0 3.458558514313936E-4 0.001245081065153017 21 0.0 1.3834234057255744E-4 0.0 4.1502702171767236E-4 0.001245081065153017 22 0.0 1.3834234057255744E-4 0.0 5.533693622902298E-4 0.0013142522354392958 23 0.0 1.3834234057255744E-4 0.0 0.0011759098948667384 0.0013142522354392958 24 0.0 1.3834234057255744E-4 0.0 0.0016601080868706894 0.0013142522354392958 25 0.0 1.3834234057255744E-4 0.0 0.002005963938302083 0.0013142522354392958 26 0.0 1.3834234057255744E-4 0.0 0.002420990960019755 0.0013834234057255744 27 0.0 1.3834234057255744E-4 0.0 0.0031127026628825424 0.0013834234057255744 28 0.0 1.3834234057255744E-4 0.0 0.006017891814906248 0.0014525945760118532 29 0.0 1.3834234057255744E-4 0.0 0.01293500884353412 0.0014525945760118532 30 0.0 1.3834234057255744E-4 0.0 0.02704592758193498 0.0014525945760118532 31 0.0 1.3834234057255744E-4 0.0 0.0529851164392895 0.0014525945760118532 32 0.0 1.3834234057255744E-4 0.0 0.07837093593435379 0.0014525945760118532 33 0.0 1.3834234057255744E-4 0.0 0.10507100766485739 0.0014525945760118532 34 0.0 1.3834234057255744E-4 0.0 0.13384621450394932 0.0015909369165844106 35 0.0 1.3834234057255744E-4 0.0 0.16725588975222194 0.0015909369165844106 36 0.0 1.3834234057255744E-4 0.0 0.20972698830799708 0.0015909369165844106 37 0.0 1.3834234057255744E-4 0.0 0.27993572614857 0.0015909369165844106 38 0.0 1.3834234057255744E-4 0.0 0.3693048781584421 0.001729279257156968 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 2945 0.0 20.54326 1 TAACGGC 150 2.1827873E-11 20.53543 36 GTATTAG 380 0.0 20.263126 1 ATACCGT 350 0.0 19.485008 6 CGTCGTA 340 0.0 19.412405 10 TTAACGG 160 5.2750693E-11 19.251968 35 ACCGTCG 365 0.0 18.684256 8 TACCGTC 385 0.0 18.285053 7 CCGTCGT 380 0.0 17.947962 9 TAGGACG 275 0.0 17.599363 4 GCATTCG 615 0.0 17.527214 22 TTCGTAT 625 0.0 16.895973 25 GACGGCC 630 0.0 16.762459 11 GTCGTAG 395 0.0 16.709412 11 AACGCAG 3625 0.0 16.68905 6 GCATATA 215 1.2732926E-11 16.372068 1 CATATAG 175 3.6307028E-9 16.341702 2 ATTCGTA 635 0.0 16.282312 24 TATAGGG 190 6.166374E-10 16.20994 4 CGTATTG 645 0.0 16.031536 27 >>END_MODULE