FastQCFastQC Report
Thu 2 Feb 2017
SRR4064047_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4064047_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1173129
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGGACG5600.023.5708354
GTATCAA21550.022.2594051
TTAGGAC4000.021.9994453
AGGACGT6400.020.6244815
GACGTGA4050.020.0982597
GGACGTG6500.019.9687276
GATATAC2450.019.7588161
CTTTAGG4750.019.4562871
GTAGGAC7800.019.1790053
TGTAGGA8100.019.0118662
TAAACGC2550.018.97991428
TGGCGAG7900.018.65775918
CTCTATA951.5973905E-518.525852
GTAAACG2500.018.47953427
AAACGCT2750.018.39953629
TCCTACA7100.018.2812292
GTATATA1456.2918843E-918.210321
CTGTAGG8350.017.9195351
TAGAACA4200.017.8090744
GTCCTAC6200.017.745271
Produced by FastQC (version 0.11.5)