##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064045_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1255285 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.305697909239733 32.0 32.0 32.0 32.0 32.0 2 31.35265776297813 32.0 32.0 32.0 32.0 32.0 3 31.446382295653976 32.0 32.0 32.0 32.0 32.0 4 31.530891391198015 32.0 32.0 32.0 32.0 32.0 5 31.476746714889448 32.0 32.0 32.0 32.0 32.0 6 35.04780747001677 36.0 36.0 36.0 36.0 36.0 7 35.06196202456016 36.0 36.0 36.0 36.0 36.0 8 35.012162178310106 36.0 36.0 36.0 36.0 36.0 9 35.130655588173205 36.0 36.0 36.0 36.0 36.0 10 34.967782615103346 36.0 36.0 36.0 36.0 36.0 11 35.12726193653234 36.0 36.0 36.0 36.0 36.0 12 35.022484137068474 36.0 36.0 36.0 36.0 36.0 13 35.07746448017781 36.0 36.0 36.0 36.0 36.0 14 35.016859119642156 36.0 36.0 36.0 36.0 36.0 15 34.976252404832366 36.0 36.0 36.0 36.0 36.0 16 35.00147376890507 36.0 36.0 36.0 36.0 36.0 17 34.95034912390413 36.0 36.0 36.0 36.0 36.0 18 34.959287333155416 36.0 36.0 36.0 36.0 36.0 19 34.94995319787937 36.0 36.0 36.0 36.0 36.0 20 34.9421971902795 36.0 36.0 36.0 36.0 36.0 21 34.94520367884584 36.0 36.0 36.0 36.0 36.0 22 34.926055039293864 36.0 36.0 36.0 32.0 36.0 23 34.871341567851125 36.0 36.0 36.0 32.0 36.0 24 34.84300537328176 36.0 36.0 36.0 32.0 36.0 25 34.81445727464281 36.0 36.0 36.0 32.0 36.0 26 34.76161190486623 36.0 36.0 36.0 32.0 36.0 27 34.75019776385442 36.0 36.0 36.0 32.0 36.0 28 34.72341181484683 36.0 36.0 36.0 32.0 36.0 29 34.702183169559106 36.0 36.0 36.0 32.0 36.0 30 34.68277243813158 36.0 36.0 36.0 32.0 36.0 31 34.67603611928765 36.0 36.0 36.0 32.0 36.0 32 34.62658679104745 36.0 36.0 36.0 32.0 36.0 33 34.61198054625045 36.0 36.0 36.0 32.0 36.0 34 34.59286536523578 36.0 36.0 36.0 32.0 36.0 35 34.556454510330326 36.0 36.0 36.0 32.0 36.0 36 34.53074082778014 36.0 36.0 36.0 32.0 36.0 37 34.51842649278849 36.0 36.0 36.0 32.0 36.0 38 34.471809190741546 36.0 36.0 36.0 32.0 36.0 39 34.473845381726065 36.0 36.0 36.0 32.0 36.0 40 34.45240483236874 36.0 36.0 36.0 32.0 36.0 41 34.42797532034558 36.0 36.0 36.0 32.0 36.0 42 34.36236551858741 36.0 36.0 36.0 32.0 36.0 43 34.35600520997224 36.0 36.0 36.0 32.0 36.0 44 34.28884436602046 36.0 36.0 36.0 32.0 36.0 45 34.26363017163433 36.0 36.0 36.0 32.0 36.0 46 34.23521351724907 36.0 36.0 36.0 32.0 36.0 47 34.20509525725234 36.0 36.0 36.0 32.0 36.0 48 34.16464786881067 36.0 36.0 36.0 32.0 36.0 49 34.149225873008916 36.0 36.0 36.0 32.0 36.0 50 33.52961837351677 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 3.0 20 10.0 21 39.0 22 114.0 23 360.0 24 1024.0 25 2336.0 26 4869.0 27 9024.0 28 14856.0 29 23011.0 30 33214.0 31 47402.0 32 69242.0 33 110500.0 34 226578.0 35 712700.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.454252706166166 18.07807429797425 11.938042796742163 26.52963019911742 2 16.039672581705204 20.417916392822292 36.908725179741495 26.633685845731016 3 17.933927091963543 24.288126951755785 28.87284111911287 28.905104837167805 4 12.247178927494554 15.83042894641456 36.03572097173152 35.88667115435937 5 14.22545477720199 37.09986178437566 33.29698036700829 15.37770307141406 6 34.47586362926637 35.77302028863588 16.4315804232349 13.319535658862854 7 30.31909088374353 30.498572037425763 20.736565799798452 18.445771279032254 8 28.218532046507367 32.97330885018143 19.327563063368082 19.480596039943123 9 27.60254351248176 13.880258621239062 18.336663288912682 40.1805345773665 10 15.66952951420284 26.747482826499645 31.589282684220294 25.993704975077215 11 37.29057544701004 20.83718040126346 22.612633784359726 19.259610367366772 12 24.671945701357465 23.55936524122108 28.864078133962146 22.90461092345931 13 29.569250452290607 19.308009307905746 25.279041996308383 25.84369824349526 14 23.586534999251167 19.523868702221968 25.234369274204084 31.655227024322784 15 25.169569976594 27.36334420514422 22.13858133224562 25.32850448601615 16 25.820775670051844 25.727409748931706 23.63695314815228 24.814861432864166 17 24.121932469518875 25.856359312825372 25.22909140155423 24.792616816101525 18 24.878393858909792 24.75045447955121 26.245417364385055 24.125734297153947 19 25.79424257777523 24.643427304100108 25.494310450862116 24.068019667262547 20 26.026543878656554 24.01727104709706 25.01609202727678 24.9400930469696 21 27.00167691002442 23.959738226777187 24.40864026894291 24.629944594255488 22 25.98368178037799 24.130475653318292 24.904244776480862 24.98159778982286 23 24.47296409153373 24.04548804046922 25.49345760889048 25.98809025910657 24 24.918743487529515 24.760054298469512 25.25619700402459 25.065005209976388 25 24.89113826436234 24.354198565717756 25.44711781285501 25.307545357064896 26 24.698399243478626 25.160310670886915 25.657753746557372 24.483536339077087 27 25.38797979637036 24.658227243033092 24.847676104587244 25.106116856009304 28 24.681253126921963 24.4755534452705 25.73492624447511 25.108267183332426 29 24.73991257525387 24.68183654105832 25.486775154929177 25.091475728758635 30 24.704539280442113 24.801412953507807 25.61814724320311 24.87590052284697 31 25.267588331037537 24.541086510202017 24.775074430784745 25.416250727975697 32 24.900496799008316 24.74028788211938 24.738375891067495 25.62083942780481 33 24.710112194846033 24.31456620993653 25.260769565982887 25.714552029234554 34 25.296057270003438 24.518600721610966 25.415635329142393 24.769706679243207 35 25.787796925052643 24.448930524098557 25.231967407055695 24.5313051437931 36 24.864820939031397 24.947597449623043 24.974844385736947 25.212737225608617 37 25.62197318598291 24.743335731283047 24.838616390982114 24.79607469175193 38 24.854862263551166 24.68182031840674 25.321565631256536 25.141751786785555 39 25.451812148120297 24.50106475104424 24.67218972246366 25.37493337837181 40 25.64530918517492 24.742222870167 25.162696544356468 24.44977140030161 41 24.753834289847777 25.05831498376422 25.450905475553913 24.736945250834093 42 25.883007131612995 25.120373852026994 24.807051310648983 24.189567705711028 43 25.110594001116894 24.375451597150246 25.20730649335958 25.306647908373282 44 24.86275871903358 24.820775752805567 24.82300634683666 25.49345918132419 45 25.060604732865173 25.124017637709965 24.732227856269393 25.083149773155466 46 24.7912796311226 24.822747014980067 24.900260342811258 25.48571301108608 47 25.118660486814704 24.706077297010502 25.225490774037613 24.949771442137177 48 25.798020016522432 25.202049291662387 24.290367835266395 24.709562856548786 49 24.93750388360188 25.21887581874294 24.606899826173965 25.236720471481217 50 25.008524048971058 25.442613234422502 24.486087477455083 25.062775239151353 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 22.0 1 23.5 2 25.0 3 73.0 4 121.0 5 142.5 6 164.0 7 182.5 8 201.0 9 267.5 10 334.0 11 507.5 12 681.0 13 1233.5 14 1786.0 15 2387.5 16 2989.0 17 3237.0 18 3485.0 19 3476.5 20 3468.0 21 3870.0 22 4272.0 23 5004.5 24 5737.0 25 6719.5 26 7702.0 27 9402.0 28 11102.0 29 12718.5 30 14335.0 31 16711.0 32 19087.0 33 22346.5 34 25606.0 35 30040.5 36 34475.0 37 40708.0 38 46941.0 39 50853.0 40 54765.0 41 60035.0 42 65305.0 43 66891.0 44 68477.0 45 74818.5 46 81160.0 47 86300.0 48 91440.0 49 94288.5 50 97137.0 51 94489.5 52 91842.0 53 90637.5 54 89433.0 55 89941.0 56 90449.0 57 88210.0 58 85971.0 59 78219.5 60 70468.0 61 62128.5 62 53789.0 63 46778.0 64 39767.0 65 33655.0 66 27543.0 67 24056.0 68 20569.0 69 18539.5 70 16510.0 71 13055.0 72 9600.0 73 8257.0 74 6914.0 75 5477.5 76 4041.0 77 3529.0 78 3017.0 79 2491.0 80 1965.0 81 1549.0 82 1133.0 83 939.5 84 746.0 85 543.5 86 341.0 87 237.5 88 134.0 89 109.5 90 85.0 91 72.0 92 59.0 93 45.5 94 32.0 95 30.0 96 28.0 97 24.0 98 20.0 99 16.0 100 12.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.007647665669549146 2 7.96631840578036E-4 3 3.98315920289018E-4 4 0.0 5 0.0 6 7.966318405780361E-5 7 0.0 8 0.0 9 0.0010356213927514468 10 6.373054724624289E-4 11 0.0 12 3.98315920289018E-4 13 6.373054724624289E-4 14 7.966318405780361E-5 15 0.004062822386947984 16 7.169686565202324E-4 17 0.0 18 2.389895521734108E-4 19 7.966318405780361E-5 20 3.98315920289018E-4 21 0.0 22 7.966318405780361E-5 23 7.96631840578036E-4 24 7.966318405780361E-5 25 0.0018322532333294832 26 0.005257770147815038 27 0.005178106963757235 28 0.004540801491294806 29 0.0027085482579653226 30 0.003345853730427752 31 0.007329012933317933 32 0.003903496018832377 33 0.004620464675352609 34 0.003027200994196537 35 0.0035051800985433585 36 0.007806992037664754 37 0.0036645064666589663 38 0.007806992037664754 39 0.004939117411583824 40 0.0027085482579653226 41 0.002628885073907519 42 0.0023102323376763046 43 0.0014339373130404648 44 0.0011152845768092506 45 0.001593263681156072 46 0.0013542741289826613 47 0.0018322532333294832 48 0.0017525900492716792 49 5.576422884046253E-4 50 0.0010356213927514468 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1255285.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.84469535534237 #Duplication Level Percentage of deduplicated Percentage of total 1 80.3491215295817 46.47770456948034 2 11.875222167226184 13.738372170804144 3 3.373340655399768 5.853895876241717 4 1.3959896191170738 3.2300237694819023 5 0.7583067885665203 2.193201258525919 6 0.46481540098583335 1.6132263159898104 7 0.3245719018700837 1.314233394920535 8 0.225831265227337 1.0450512591029466 9 0.16132629661667042 0.8398683432537212 >10 0.9285198750917992 9.67554852370227 >50 0.0692979092821577 2.797344411576897 >100 0.06602738741531548 7.81494589403115 >500 0.006242075688749486 2.4561651908031368 >1k 0.001387127930833219 0.950419022085628 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 1297 0.10332314972297128 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 1292 0.10292483380268226 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 1273 0.10141123330558398 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 1266 0.10085359101717938 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 7.966318405780361E-5 0.0 4 0.0 0.0 0.0 7.966318405780361E-5 0.0 5 0.0 0.0 0.0 7.966318405780361E-5 0.0 6 0.0 0.0 0.0 7.966318405780361E-5 0.0 7 0.0 0.0 0.0 7.966318405780361E-5 0.0 8 0.0 0.0 0.0 7.966318405780361E-5 0.0 9 0.0 0.0 0.0 7.966318405780361E-5 0.0 10 0.0 0.0 0.0 7.966318405780361E-5 0.0 11 0.0 0.0 0.0 7.966318405780361E-5 7.966318405780361E-5 12 0.0 0.0 0.0 7.966318405780361E-5 1.5932636811560722E-4 13 0.0 0.0 0.0 7.966318405780361E-5 2.389895521734108E-4 14 0.0 0.0 0.0 7.966318405780361E-5 2.389895521734108E-4 15 0.0 0.0 0.0 7.966318405780361E-5 6.373054724624289E-4 16 0.0 0.0 0.0 7.966318405780361E-5 6.373054724624289E-4 17 7.966318405780361E-5 0.0 0.0 7.966318405780361E-5 6.373054724624289E-4 18 7.966318405780361E-5 0.0 0.0 2.389895521734108E-4 6.373054724624289E-4 19 7.966318405780361E-5 0.0 0.0 2.389895521734108E-4 6.373054724624289E-4 20 7.966318405780361E-5 7.966318405780361E-5 0.0 2.389895521734108E-4 6.373054724624289E-4 21 7.966318405780361E-5 7.966318405780361E-5 0.0 4.779791043468216E-4 6.373054724624289E-4 22 7.966318405780361E-5 7.966318405780361E-5 0.0 6.373054724624289E-4 7.169686565202325E-4 23 7.966318405780361E-5 7.966318405780361E-5 0.0 0.0010356213927514468 8.762950246358396E-4 24 7.966318405780361E-5 7.966318405780361E-5 0.0 0.0020712427855028937 0.0010356213927514468 25 7.966318405780361E-5 7.966318405780361E-5 0.0 0.0023102323376763046 0.0010356213927514468 26 7.966318405780361E-5 7.966318405780361E-5 0.0 0.002628885073907519 0.0010356213927514468 27 7.966318405780361E-5 7.966318405780361E-5 0.0 0.0031068641782543405 0.0010356213927514468 28 7.966318405780361E-5 7.966318405780361E-5 0.0 0.005656086068104056 0.0010356213927514468 29 7.966318405780361E-5 7.966318405780361E-5 0.0 0.009559582086936433 0.0010356213927514468 30 7.966318405780361E-5 7.966318405780361E-5 0.0 0.015534320891271703 0.0010356213927514468 31 7.966318405780361E-5 7.966318405780361E-5 0.0 0.028121103972404672 0.0010356213927514468 32 7.966318405780361E-5 7.966318405780361E-5 0.0 0.04453171988831221 0.001194947760867054 33 7.966318405780361E-5 7.966318405780361E-5 0.0 0.05990671441146831 0.001194947760867054 34 7.966318405780361E-5 7.966318405780361E-5 0.0 0.07671564624766487 0.001433937313040465 35 7.966318405780361E-5 7.966318405780361E-5 0.0 0.0970297581824048 0.001433937313040465 36 7.966318405780361E-5 7.966318405780361E-5 0.0 0.12833738951712162 0.001433937313040465 37 7.966318405780361E-5 7.966318405780361E-5 0.0 0.17302843577354943 0.001433937313040465 38 7.966318405780361E-5 7.966318405780361E-5 0.0 0.23046559147922582 0.0015932636811560722 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATACGGT 25 0.002353454 35.19809 6 GTATCAA 2180 0.0 21.496815 1 AATACGG 80 8.99267E-5 19.248955 5 GTCTTAC 140 4.0781742E-9 18.858372 1 TTAATAC 125 4.8556103E-7 17.599043 3 GGCGTTA 265 0.0 17.435099 42 TAGGACG 230 0.0 17.216457 4 CGCAATA 400 0.0 16.501076 36 ATACGAA 400 0.0 16.501076 40 CGCGAGC 80 0.0019880706 16.50042 39 CCGTATG 80 0.0019891297 16.499104 14 TTAACCG 80 0.0019891297 16.499104 5 CGTACAC 80 0.0019891297 16.499104 3 TACCGTA 80 0.0019891297 16.499104 12 CTAGCGG 415 0.0 16.43415 29 CGAATGC 430 0.0 16.373161 43 GTAGGAC 405 0.0 16.29541 3 CCGATAA 230 1.8189894E-12 16.259987 9 GGTATCA 1070 0.0 16.24405 1 GTCCTAA 190 6.166374E-10 16.211584 1 >>END_MODULE