##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064040_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1160947 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.23061948564405 32.0 32.0 32.0 32.0 32.0 2 31.34918045354353 32.0 32.0 32.0 32.0 32.0 3 31.436531555704093 32.0 32.0 32.0 32.0 32.0 4 31.53111468482196 32.0 32.0 32.0 32.0 32.0 5 31.461038273065007 32.0 32.0 32.0 32.0 32.0 6 35.0623482381194 36.0 36.0 36.0 36.0 36.0 7 35.084530129282385 36.0 36.0 36.0 36.0 36.0 8 35.021922620067926 36.0 36.0 36.0 36.0 36.0 9 35.16770188475443 36.0 36.0 36.0 36.0 36.0 10 34.99421162206371 36.0 36.0 36.0 36.0 36.0 11 35.15106288228489 36.0 36.0 36.0 36.0 36.0 12 35.06502450154917 36.0 36.0 36.0 36.0 36.0 13 35.10409432988758 36.0 36.0 36.0 36.0 36.0 14 35.045996070449384 36.0 36.0 36.0 36.0 36.0 15 35.0119359453963 36.0 36.0 36.0 36.0 36.0 16 35.0428589763357 36.0 36.0 36.0 36.0 36.0 17 35.013383039880374 36.0 36.0 36.0 36.0 36.0 18 35.008060660822586 36.0 36.0 36.0 36.0 36.0 19 35.00924331601701 36.0 36.0 36.0 36.0 36.0 20 34.998801840221816 36.0 36.0 36.0 36.0 36.0 21 34.99472241196196 36.0 36.0 36.0 36.0 36.0 22 34.97102882388257 36.0 36.0 36.0 36.0 36.0 23 34.937636257296845 36.0 36.0 36.0 36.0 36.0 24 34.91707717923385 36.0 36.0 36.0 36.0 36.0 25 34.88935929030352 36.0 36.0 36.0 32.0 36.0 26 34.82862439026071 36.0 36.0 36.0 32.0 36.0 27 34.81788832737412 36.0 36.0 36.0 32.0 36.0 28 34.79629302629664 36.0 36.0 36.0 32.0 36.0 29 34.77797780604972 36.0 36.0 36.0 32.0 36.0 30 34.75027456033738 36.0 36.0 36.0 32.0 36.0 31 34.74865433133468 36.0 36.0 36.0 32.0 36.0 32 34.711001449678584 36.0 36.0 36.0 32.0 36.0 33 34.70420441243226 36.0 36.0 36.0 32.0 36.0 34 34.696812171442794 36.0 36.0 36.0 32.0 36.0 35 34.67036651974638 36.0 36.0 36.0 32.0 36.0 36 34.64517415523706 36.0 36.0 36.0 32.0 36.0 37 34.62430584686467 36.0 36.0 36.0 32.0 36.0 38 34.596657728561254 36.0 36.0 36.0 32.0 36.0 39 34.57811338502102 36.0 36.0 36.0 32.0 36.0 40 34.574903936183134 36.0 36.0 36.0 32.0 36.0 41 34.55938815467028 36.0 36.0 36.0 32.0 36.0 42 34.519534483486325 36.0 36.0 36.0 32.0 36.0 43 34.50199104696424 36.0 36.0 36.0 32.0 36.0 44 34.45859630112314 36.0 36.0 36.0 32.0 36.0 45 34.43249519573245 36.0 36.0 36.0 32.0 36.0 46 34.409510511677105 36.0 36.0 36.0 32.0 36.0 47 34.38756032790472 36.0 36.0 36.0 32.0 36.0 48 34.3500624920862 36.0 36.0 36.0 32.0 36.0 49 34.3343813283466 36.0 36.0 36.0 32.0 36.0 50 33.73980552083773 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 2.0 18 1.0 19 3.0 20 11.0 21 25.0 22 96.0 23 307.0 24 841.0 25 1940.0 26 3913.0 27 7273.0 28 12301.0 29 19316.0 30 28360.0 31 40874.0 32 60020.0 33 98069.0 34 204882.0 35 682712.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.33479493121301 18.37306065487625 12.421112479863545 26.871031934047192 2 15.459541406101952 20.191568901062933 37.89377573345737 26.455113959377748 3 18.17459052754437 23.7341131578154 29.272446153779896 28.818850160860332 4 12.542605304118105 16.527541739631523 36.070897293330354 34.85895566292001 5 14.12131647697957 37.04544651909174 34.05056389309762 14.782673110831071 6 34.14258925718144 36.056722853749065 16.638284566942563 13.162403322126925 7 30.027382817648007 30.48752440895235 20.825153947596228 18.65993882580342 8 27.56568559977329 34.715107580277135 19.08062986510151 18.63857695484807 9 27.30996202212175 14.226501133995843 18.349629050277404 40.113907793605 10 15.584313786292695 27.791286910726882 32.948646057558385 23.67575324542204 11 36.56626874439574 21.03601628670387 22.92016775959626 19.477547209304127 12 24.221777566073214 23.537077920008407 29.84787419236192 22.393270321556454 13 30.17872632192789 20.16500464710833 24.88016145578959 24.77610757517419 14 23.17758377873198 19.432703530313667 25.64712367941634 31.742589011538016 15 24.914440865781774 28.10586333107358 21.9809233064546 24.998772496690048 16 24.736742820669853 26.066530741978244 24.681356524944935 24.51536991240696 17 23.84096776166354 26.550307636782726 25.473686567948405 24.135038033605323 18 24.01939799043021 25.866427780816494 26.809194234007638 23.304979994745658 19 25.62126059265461 25.30177975547528 25.287394934820394 23.789564717049714 20 25.826032502943736 25.230567272583187 25.23961165985179 23.703788564621288 21 25.523904192008768 24.69234168312593 24.98856536947854 24.795188755386764 22 25.54845500597359 25.252574846482556 25.295384872470052 23.903585275073798 23 24.896936787321977 25.27499315208909 25.385076550168918 24.44299351042002 24 25.058616192712467 25.098153051573636 25.39239686392602 24.450833891787877 25 24.84247502211595 25.198397487525053 25.563019897030564 24.396107593328434 26 24.171749017986354 25.580421749017983 25.9012128729929 24.346616360002756 27 24.62270002067397 25.677072565639858 25.320274274688163 24.379953138998 28 24.60513122667742 25.438886649231797 25.317514463016373 24.638467661074415 29 24.780087448187466 25.291752374848826 24.923939372013134 25.00422080495057 30 24.498234128693255 25.406322680678784 25.2318890515979 24.863554139030065 31 25.06085973747185 24.77478020719015 25.408100504278703 24.756259551059294 32 24.498988285822822 25.73992097517359 25.318868706289337 24.442222032714245 33 24.652765813756368 25.551905093342338 25.493070821646878 24.302258271254416 34 24.948402457386802 25.183218652985424 25.7242606649278 24.144118224699977 35 24.494422866377064 25.559802257040005 25.582973914226965 24.362800962355962 36 24.359868924311026 25.325707925875392 25.73230443741515 24.582118712398437 37 24.790421224911707 25.18296149539151 25.300284262210354 24.726333017486432 38 24.808676326171977 25.614458246472445 25.150319590648312 24.42654583670727 39 25.09133039594451 24.918618824269206 25.390237704529696 24.59981307525659 40 25.27263142298959 24.95632728863958 25.38108101589446 24.389960272476372 41 24.800824181740346 24.819602570055014 25.827605781331698 24.55196746687294 42 24.72515403691718 25.344833378268845 25.544502090147237 24.385510494666743 43 24.593817026005013 25.171112814726126 25.79328641692436 24.4417837423445 44 24.235786419876444 25.231796522104656 25.59684804967044 24.935569008348466 45 24.2236800622951 25.213924057175046 25.74634386687868 24.81605201365117 46 24.661005707473464 24.811660266647372 25.45459087252161 25.072743153357557 47 24.49032153587475 25.071322252542792 25.791866506794562 24.646489704787893 48 24.253551675336432 25.23552218004343 25.488508791650837 25.0224173529693 49 24.521810736453673 25.012877473637786 25.65683729247456 24.80847449743398 50 23.99937980756807 25.73876116561722 25.482501098257433 24.77935792855728 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1.0 1 10.5 2 20.0 3 65.0 4 110.0 5 120.0 6 130.0 7 145.0 8 160.0 9 184.5 10 209.0 11 354.0 12 499.0 13 884.0 14 1269.0 15 1660.0 16 2051.0 17 1988.0 18 1925.0 19 1986.0 20 2047.0 21 2500.0 22 2953.0 23 3779.5 24 4606.0 25 5848.0 26 7090.0 27 9188.5 28 11287.0 29 14433.5 30 17580.0 31 20982.0 32 24384.0 33 28666.5 34 32949.0 35 38463.0 36 43977.0 37 45968.5 38 47960.0 39 51069.5 40 54179.0 41 56568.5 42 58958.0 43 61443.0 44 63928.0 45 68484.5 46 73041.0 47 76671.0 48 80301.0 49 83453.5 50 86606.0 51 88116.0 52 89626.0 53 88895.5 54 88165.0 55 85509.0 56 82853.0 57 78639.5 58 74426.0 59 68740.5 60 63055.0 61 55266.0 62 47477.0 63 41180.0 64 34883.0 65 28966.0 66 23049.0 67 19027.5 68 15006.0 69 12217.0 70 9428.0 71 7337.0 72 5246.0 73 4485.0 74 3724.0 75 3003.0 76 2282.0 77 1838.5 78 1395.0 79 1143.5 80 892.0 81 731.5 82 571.0 83 440.0 84 309.0 85 231.0 86 153.0 87 120.5 88 88.0 89 75.5 90 63.0 91 36.0 92 9.0 93 9.5 94 10.0 95 10.0 96 10.0 97 6.5 98 3.0 99 3.5 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.010077979442644668 2 6.029560350300229E-4 3 1.7227315286572084E-4 4 0.0 5 0.0 6 3.445463057314417E-4 7 0.0 8 0.0 9 6.890926114628833E-4 10 3.445463057314417E-4 11 0.0 12 0.0 13 8.613657643286042E-4 14 1.7227315286572084E-4 15 0.004651375127374463 16 8.613657643286042E-4 17 0.0 18 1.7227315286572084E-4 19 8.613657643286042E-5 20 5.168194585971625E-4 21 0.0 22 3.445463057314417E-4 23 7.752291878957437E-4 24 4.306828821643021E-4 25 0.0017227315286572084 26 0.005771150621001648 27 0.005771150621001648 28 0.004737511703807323 29 0.002670233869418673 30 0.0040484190923444395 31 0.006977062691061694 32 0.003962282515911578 33 0.005082058009538764 34 0.0033593264808815565 35 0.003962282515911578 36 0.007838428455390298 37 0.0040484190923444395 38 0.007493882149658856 39 0.004479101974508741 40 0.0033593264808815565 41 0.0032731899044486958 42 0.00206727783438865 43 0.001464321799358627 44 0.0012920486464929062 45 0.0018088681050900685 46 0.0011197754936271853 47 0.0016365949522243479 48 0.0013781852229257667 49 4.306828821643021E-4 50 0.001464321799358627 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1160947.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.87808903888098 #Duplication Level Percentage of deduplicated Percentage of total 1 61.96494359300608 27.80868255856165 2 16.13168589875094 14.479184722228112 3 7.826305385045705 10.536888897466646 4 4.388737766914376 7.8783265708753225 5 2.755042129179629 6.182051298959582 6 1.8106367667104866 4.875475082010288 7 1.2181011252182754 3.826623552913481 8 0.857446405167778 3.078444489375037 9 0.6426642067648691 2.595738734396605 >10 2.343966203478372 16.261628434933 >50 0.04637842497523267 1.4099751953023463 >100 0.013899052724337368 1.0153468437461324 >500 1.9304206389045463E-4 0.051633619231890034 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 1.7227315286572084E-4 0.0 5 0.0 0.0 0.0 1.7227315286572084E-4 0.0 6 0.0 0.0 0.0 1.7227315286572084E-4 0.0 7 0.0 0.0 0.0 1.7227315286572084E-4 0.0 8 0.0 0.0 0.0 1.7227315286572084E-4 0.0 9 0.0 0.0 0.0 2.5840972929858124E-4 0.0 10 0.0 0.0 0.0 2.5840972929858124E-4 0.0 11 0.0 0.0 0.0 2.5840972929858124E-4 0.0 12 0.0 0.0 0.0 2.5840972929858124E-4 4.3068288216430205E-4 13 0.0 0.0 0.0 2.5840972929858124E-4 5.168194585971625E-4 14 0.0 0.0 0.0 2.5840972929858124E-4 5.168194585971625E-4 15 0.0 0.0 0.0 2.5840972929858124E-4 9.475023407614645E-4 16 0.0 0.0 0.0 2.5840972929858124E-4 9.475023407614645E-4 17 0.0 0.0 0.0 2.5840972929858124E-4 9.475023407614645E-4 18 0.0 0.0 0.0 2.5840972929858124E-4 9.475023407614645E-4 19 0.0 0.0 0.0 4.3068288216430205E-4 9.475023407614645E-4 20 0.0 0.0 0.0 4.3068288216430205E-4 0.0012059120700600458 21 0.0 0.0 0.0 4.3068288216430205E-4 0.0012059120700600458 22 0.0 0.0 0.0 4.3068288216430205E-4 0.0012059120700600458 23 0.0 0.0 0.0 5.168194585971625E-4 0.0012059120700600458 24 0.0 0.0 0.0 7.752291878957438E-4 0.0012059120700600458 25 0.0 0.0 0.0 9.475023407614645E-4 0.0012059120700600458 26 0.0 0.0 0.0 0.0011197754936271853 0.0012920486464929062 27 0.0 0.0 0.0 0.0017227315286572082 0.0012920486464929062 28 0.0 0.0 0.0 0.003359326480881556 0.0012920486464929062 29 0.0 0.0 0.0 0.008872067372584622 0.0012920486464929062 30 0.0 0.0 0.0 0.016193676369377758 0.0012920486464929062 31 0.0 0.0 0.0 0.04255146875783305 0.0012920486464929062 32 0.0 0.0 0.0 0.07037358294564695 0.0012920486464929062 33 0.0 0.0 0.0 0.09604228272263936 0.0013781852229257667 34 0.0 0.0 0.0 0.1294632743785892 0.0015504583757914876 35 0.0 0.0 0.0 0.16486540729249483 0.0015504583757914876 36 0.0 0.0 0.0 0.22033736251525693 0.0015504583757914876 37 0.0 0.0 0.0 0.3094887191232675 0.0015504583757914876 38 0.0 0.0 0.0 0.43921040323115523 0.0015504583757914876 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 485 0.0 29.941278 1 GTATCAA 1115 0.0 26.83689 1 GACGTGA 545 0.0 22.603977 7 TAGGACG 810 0.0 21.998514 4 TTAGGAC 620 0.0 21.643702 3 GTATTAG 130 1.6225385E-9 20.30982 1 GGACGTG 915 0.0 19.474094 6 TTTAGGA 635 0.0 19.053831 2 GTATAGG 165 8.185452E-11 18.668623 1 AGGACGT 945 0.0 18.62308 5 ACGACGC 60 0.007411133 18.333675 21 CGTGAAA 700 0.0 18.228125 9 GTCCTAC 615 0.0 17.888052 1 TATACTG 185 2.1827873E-11 17.836634 5 TATCAAC 1655 0.0 17.2798 2 CTTTAGG 695 0.0 17.095316 1 GTAGGAC 805 0.0 16.942955 3 GTCTTAA 130 7.308172E-7 16.92485 1 TAGGACT 275 0.0 16.798866 4 TGAAATA 840 0.0 16.761496 11 >>END_MODULE