##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064035_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 240417 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.904703078401276 32.0 32.0 32.0 32.0 32.0 2 31.271461668683994 32.0 32.0 32.0 32.0 32.0 3 31.392597029328208 32.0 32.0 32.0 32.0 32.0 4 31.48601804364916 32.0 32.0 32.0 32.0 32.0 5 31.379827549632513 32.0 32.0 32.0 32.0 32.0 6 34.882429279127514 36.0 36.0 36.0 36.0 36.0 7 34.946850680276356 36.0 36.0 36.0 36.0 36.0 8 34.904050046377755 36.0 36.0 36.0 36.0 36.0 9 35.03539683133888 36.0 36.0 36.0 36.0 36.0 10 34.87497556329211 36.0 36.0 36.0 32.0 36.0 11 35.057408585915304 36.0 36.0 36.0 36.0 36.0 12 34.96113419600111 36.0 36.0 36.0 36.0 36.0 13 35.00713759842274 36.0 36.0 36.0 36.0 36.0 14 34.94527841209232 36.0 36.0 36.0 32.0 36.0 15 34.895202918262854 36.0 36.0 36.0 32.0 36.0 16 34.929726267277275 36.0 36.0 36.0 36.0 36.0 17 34.89316063339947 36.0 36.0 36.0 32.0 36.0 18 34.903434449310986 36.0 36.0 36.0 36.0 36.0 19 34.854136770694254 36.0 36.0 36.0 32.0 36.0 20 34.822063331627966 36.0 36.0 36.0 32.0 36.0 21 34.785426987276274 36.0 36.0 36.0 32.0 36.0 22 34.79382073647038 36.0 36.0 36.0 32.0 36.0 23 34.82048274456465 36.0 36.0 36.0 32.0 36.0 24 34.77810221406972 36.0 36.0 36.0 32.0 36.0 25 34.775510883173816 36.0 36.0 36.0 32.0 36.0 26 34.722802464052045 36.0 36.0 36.0 32.0 36.0 27 34.709147023712966 36.0 36.0 36.0 32.0 36.0 28 34.65873045583299 36.0 36.0 36.0 32.0 36.0 29 34.62436100608526 36.0 36.0 36.0 32.0 36.0 30 34.556117079907 36.0 36.0 36.0 32.0 36.0 31 34.53718331066439 36.0 36.0 36.0 32.0 36.0 32 34.445900248318544 36.0 36.0 36.0 32.0 36.0 33 34.409426122112826 36.0 36.0 36.0 32.0 36.0 34 34.338224834350314 36.0 36.0 36.0 32.0 36.0 35 34.26276012095651 36.0 36.0 36.0 32.0 36.0 36 34.218965380983875 36.0 36.0 36.0 32.0 36.0 37 34.14083446678063 36.0 36.0 36.0 32.0 36.0 38 34.063926427831646 36.0 36.0 36.0 32.0 36.0 39 33.929589005769145 36.0 36.0 36.0 32.0 36.0 40 33.936697488114405 36.0 36.0 36.0 32.0 36.0 41 33.885561337176654 36.0 36.0 36.0 32.0 36.0 42 33.819060216207674 36.0 36.0 36.0 32.0 36.0 43 33.744327564190556 36.0 36.0 36.0 27.0 36.0 44 33.59712915476027 36.0 36.0 36.0 21.0 36.0 45 33.48354317706318 36.0 36.0 36.0 21.0 36.0 46 33.26964399356119 36.0 36.0 36.0 21.0 36.0 47 33.20005240893947 36.0 36.0 36.0 14.0 36.0 48 33.01338091732282 36.0 36.0 36.0 14.0 36.0 49 32.924726620829645 36.0 36.0 36.0 14.0 36.0 50 32.363168993873145 36.0 36.0 36.0 14.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 2.0 20 3.0 21 7.0 22 29.0 23 100.0 24 222.0 25 626.0 26 1183.0 27 2404.0 28 4072.0 29 5993.0 30 8465.0 31 11616.0 32 16338.0 33 25197.0 34 46793.0 35 117366.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.554557177919214 21.74092100336952 13.267190814925744 23.437331003785516 2 11.905980026370848 22.704717220496054 45.41276199270434 19.976540760428755 3 18.108271114531124 29.916602541438763 30.675706590686936 21.299419753343177 4 9.501823914282268 18.210442689160917 41.452975455146685 30.834757941410135 5 9.394094427598713 42.62219393803267 35.56071326070951 12.422998373659102 6 26.877467067636644 42.01158819883785 19.107217875607798 12.003726857917702 7 24.62679427827483 34.27211886014716 23.059933365776963 18.041153495801048 8 23.87892703095039 39.33166123859794 20.39830793995433 16.391103790497343 9 27.369642619459604 14.026936643151869 22.14328497271396 36.46013576467456 10 15.177379303460237 28.976320310127818 34.669761289759045 21.1765390966529 11 31.946992101224126 23.054526094244583 28.445159868062575 16.553321936468716 12 24.789844312174264 26.663671870125654 33.2102139199807 15.33626989771938 13 29.24543605485469 23.138130831014443 28.789145526314698 18.82728758781617 14 19.650856636593918 24.938752251296705 30.007029452992096 25.403361659117284 15 20.672370977067676 35.480838425477216 26.24634467955891 17.6004459178962 16 18.522893651004924 28.52805137761214 33.08057699986689 19.86847797151604 17 16.8781741723755 30.079403702733167 31.661654541900113 21.38076758299122 18 17.083650490605905 27.952682214652043 37.523552826963154 17.4401144677789 19 22.54873823398512 25.53604778364259 31.747754942454154 20.167459039918143 20 22.410322108345536 28.444446293091975 32.31981232530281 16.825419273259683 21 22.29418052799927 25.297295948289843 30.072748599308703 22.335774924402184 22 21.630333961408716 29.851882354409216 30.820615846633142 17.697167837548925 23 19.760244912899523 30.006405670266044 32.70053075553633 17.532818661298105 24 22.160107148502167 27.935145207849793 32.81797233106225 17.08677531258579 25 20.29241712075205 29.14853791439624 33.51732457052535 17.041720394326358 26 16.879227294282078 30.36746782472692 35.362850558647594 17.39045432234341 27 17.848050716318077 30.864906238040568 33.287575500424296 17.99946754521706 28 16.921931415450658 30.596412705279448 32.43706427513685 20.044591604133043 29 18.61010702683366 28.0391169974252 31.700824019267326 21.649951956473814 30 17.608545543788427 29.430213888172506 32.60817117709209 20.35306939094698 31 20.816919102628635 27.68032081067927 32.12391478882321 19.37884529786889 32 17.39515652687537 31.63149006264403 32.2991106711147 18.674242739365905 33 17.954168243892497 31.137973635716993 33.35551848785987 17.552339632530646 34 18.51186316595122 30.03186250041596 34.3170776346877 17.139196698945128 35 18.343475855528332 31.885926782498014 31.882599092372516 17.887998269601134 36 17.128404798748733 30.65442020665901 33.16694121366412 19.050233780928135 37 18.481620292760844 30.82225115536125 29.911273247615444 20.78485530426246 38 18.693217744350893 33.35510333122566 30.178208925421814 17.77346999900163 39 19.799414299738764 30.147340221967088 30.271718331419823 19.781527146874325 40 21.59745099996672 30.63250806961499 31.10711789957073 16.66292303084756 41 20.7966423885961 28.990179236218278 32.65143983794284 17.561738537242782 42 18.827576453362617 33.9489534458088 30.414961232571297 16.808508868257295 43 16.54111882468918 33.62588545544542 31.690881940660447 18.14211377920495 44 16.968370963179876 32.71508909705007 30.540072874898094 19.77646706487197 45 17.398610706709373 33.064764360883494 30.541158853625056 18.99546607878208 46 19.569657214876067 29.950543439830625 29.076214680570516 21.40358466472279 47 21.613347365093365 31.13927631058996 28.29618105961973 18.951195264696953 48 18.59463911350704 32.1203953279425 27.66006122924362 21.624904329306847 49 20.17710967656063 30.854435644882205 28.974777053107946 19.993677625449223 50 17.971648669783537 33.57735886727784 27.890870672013047 20.560121790925578 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 23.0 1 14.5 2 6.0 3 31.5 4 57.0 5 67.0 6 77.0 7 89.0 8 101.0 9 150.5 10 200.0 11 343.0 12 486.0 13 982.0 14 1478.0 15 2132.5 16 2787.0 17 3372.5 18 3958.0 19 4035.5 20 4113.0 21 4247.5 22 4382.0 23 4496.0 24 4610.0 25 4694.5 26 4779.0 27 6233.5 28 7688.0 29 9322.0 30 10956.0 31 12136.5 32 13317.0 33 15993.5 34 18670.0 35 21917.0 36 25164.0 37 25447.0 38 25730.0 39 23224.5 40 20719.0 41 18959.5 42 17200.0 43 14349.5 44 11499.0 45 10808.0 46 10117.0 47 9438.0 48 8759.0 49 7907.5 50 7056.0 51 6941.5 52 6827.0 53 6199.5 54 5572.0 55 5419.0 56 5266.0 57 5021.5 58 4777.0 59 4116.5 60 3456.0 61 3152.0 62 2848.0 63 2501.0 64 2154.0 65 1888.5 66 1623.0 67 1434.5 68 1246.0 69 1127.5 70 1009.0 71 855.0 72 701.0 73 529.0 74 357.0 75 311.5 76 266.0 77 219.5 78 173.0 79 141.0 80 109.0 81 78.0 82 47.0 83 32.5 84 18.0 85 14.5 86 11.0 87 8.5 88 6.0 89 5.0 90 4.0 91 3.0 92 2.0 93 3.5 94 5.0 95 5.0 96 5.0 97 3.5 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.011230487028787482 2 0.0 3 8.31887928058332E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 4.15943964029166E-4 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.005823215496408324 16 4.15943964029166E-4 17 0.0 18 0.0 19 0.0 20 4.15943964029166E-4 21 0.0 22 0.0 23 0.00207971982014583 24 0.001247831892087498 25 0.002911607748204162 26 0.0062391594604374895 27 0.008734823244612486 28 0.005407271532379158 29 0.00415943964029166 30 0.004575383604320826 31 0.010814543064758316 32 0.004575383604320826 33 0.006655103424466656 34 0.003743495676262494 35 0.00415943964029166 36 0.008734823244612486 37 0.006655103424466656 38 0.01039859910072915 39 0.008734823244612486 40 0.003743495676262494 41 0.003327551712233328 42 0.003743495676262494 43 0.001663775856116664 44 0.00207971982014583 45 0.002911607748204162 46 0.001663775856116664 47 0.00415943964029166 48 0.003743495676262494 49 4.15943964029166E-4 50 0.00207971982014583 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 240417.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.42348364121446 #Duplication Level Percentage of deduplicated Percentage of total 1 71.34169266047033 31.69246516838953 2 14.949852759295206 13.28249078982231 3 5.320870273768651 7.09114780691358 4 2.5119447590527106 4.463573476456499 5 1.4389181125228179 3.1960877616352295 6 0.8473316330195105 2.2584853762875454 7 0.5685290320929672 1.7679228109716192 8 0.4550210945336109 1.6170897719537085 9 0.32359253359701884 1.2937596860399678 >10 1.9306026683215873 16.140369395271758 >50 0.1861901486002896 5.8022352213327455 >100 0.12047597850606974 9.793649357428697 >500 0.003982676975407264 1.1416045972145004 >1k 9.95669243851816E-4 0.4591187802823135 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1038 0.4317498346622743 No Hit GTATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAA 738 0.3069666454535245 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 729 0.303223149777262 No Hit TATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAA 565 0.2350083396764788 No Hit CTGTAGGACGTGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGA 549 0.22835323625201212 No Hit GTATTAGAGGCACTGCCTGCCCAGTGACTAAAGTTTAACGGCCGCGGTAT 475 0.19757338291385385 No Hit GTCCTAAAGTGTGTATTTCTCATTTTCCGTGATTTTCAGTTTTCTCGCCA 435 0.1809356243526872 No Hit ACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAA 411 0.1709529692159872 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 405 0.16845730543181223 No Hit CCATAGGGTCTTCTCGTCTTATTATTATATTTCAGCCTCTTCACTGAAAG 400 0.1663775856116664 No Hit CTTTAGGACGTGAAATATGGCGAGGAAAACTGAAAAAGGTGGAAAATTTA 392 0.16305003389943307 No Hit GTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGC 370 0.15389926669079143 No Hit GTACATGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 365 0.15181954687064558 No Hit GTACATGGGAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAA 338 0.1405890598418581 No Hit CTCTAATACTTGTAATGCTAGAGGTGATGTTTTTGGTAAACAGGCGGGGT 338 0.1405890598418581 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 332 0.13809339605768312 No Hit GGTATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAA 326 0.1355977322735081 No Hit CCATTGGGATGTCCTGATCCAACATCGAGGTCGTAAACCCTAATTGTCGA 321 0.13351801245336228 No Hit GATATACACTGTTCTACAAATCCCGTTTCCAACGAATGTGTTTTTCAGTG 301 0.12519913317277895 No Hit GTGTATATCAATGAGTTACAATGAGAAACATGGAAAATGATAAAAACCAC 294 0.1222875254245748 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG 273 0.11355270217996231 No Hit CTTCTACACCATTGGGATGTCCTGATCCAACATCGAGGTCGTAAACCCTA 268 0.11147298235981648 No Hit GCCTAAAGGAAAGATCCAAAAAGATAAAAGGAACTCGGCAAACAAGAACC 255 0.10606571082743732 No Hit GATATATTTTGATCAACGGACCAAGTTACCCTAGGGATAACAGCGCAATC 254 0.10564976686340817 No Hit ATTTAGAAATGTCCACTGTAGGACGTGGAATATGGCAAGAAAACTGAAAA 253 0.10523382289937899 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 0.0 0.0 16 0.0 0.0 0.0 0.0 0.0 17 0.0 0.0 0.0 0.0 0.0 18 0.0 0.0 0.0 0.0 0.0 19 0.0 0.0 0.0 0.0 0.0 20 0.0 0.0 0.0 0.0 0.0 21 0.0 0.0 0.0 0.001663775856116664 0.0 22 0.0 0.0 0.0 0.001663775856116664 0.0 23 0.0 0.0 0.0 0.002911607748204162 0.0 24 0.0 0.0 0.0 0.004575383604320826 0.0 25 0.0 0.0 0.0 0.005407271532379158 0.0 26 0.0 0.0 0.0 0.007071047388495822 0.0 27 0.0 0.0 0.0 0.00831887928058332 0.0 28 0.0 0.0 0.0 0.010814543064758316 0.0 29 0.0 0.0 0.0 0.01746964648922497 0.0 30 0.0 0.0 0.0 0.03493929297844994 0.0 31 0.0 0.0 0.0 0.060727818748258236 0.0 32 0.0 0.0 0.0 0.09441927983462067 0.0 33 0.0 0.0 0.0 0.11771214182025398 0.0 34 0.0 0.0 0.0 0.15223549083467475 0.0 35 0.0 0.0 0.0 0.20048499066205802 0.0 36 0.0 0.0 0.0 0.2657881930146371 0.0 37 0.0 0.0 0.0 0.33941027464779944 0.0 38 0.0 0.0 0.0 0.43632521826659515 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACACGG 20 7.850809E-4 43.992306 5 CGTATTT 25 0.0023486754 35.201164 30 GGAAGGT 25 0.0023486754 35.201164 29 AGATTTG 25 0.0023486754 35.201164 30 GGACCTA 25 0.0023510742 35.193844 6 GACCTAG 25 0.0023510742 35.193844 7 CACGTAT 30 0.005735051 29.334303 28 GGTAATA 30 0.005740886 29.328201 13 ATTGAAC 30 0.005740886 29.328201 8 CAATAAG 70 3.5715857E-8 28.280767 15 TAGGACC 285 0.0 27.78461 4 AGGACCT 430 0.0 27.111536 5 GGACCTG 400 0.0 26.395382 6 TCTCGCA 45 0.0013946922 24.445253 43 TGTAGGA 820 0.0 23.87884 2 CTGTAGG 790 0.0 23.671669 1 TTAGGAC 525 0.0 23.467443 3 CTTTAGG 525 0.0 23.467443 1 TAGGGTC 105 3.0449883E-9 23.043587 4 AAATTTA 425 0.0 22.781963 44 >>END_MODULE