##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064028_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 260233 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.33294393870109 32.0 32.0 32.0 32.0 32.0 2 31.474797585240918 32.0 32.0 32.0 32.0 32.0 3 31.525609742038863 32.0 32.0 32.0 32.0 32.0 4 31.585521436558775 32.0 32.0 32.0 32.0 32.0 5 31.568225398008707 32.0 32.0 32.0 32.0 32.0 6 35.15128365733785 36.0 36.0 36.0 36.0 36.0 7 35.16402224160656 36.0 36.0 36.0 36.0 36.0 8 35.123327940730036 36.0 36.0 36.0 36.0 36.0 9 35.18562595827585 36.0 36.0 36.0 36.0 36.0 10 35.083060180684235 36.0 36.0 36.0 36.0 36.0 11 35.196673750062445 36.0 36.0 36.0 36.0 36.0 12 35.124987991530666 36.0 36.0 36.0 36.0 36.0 13 35.14163461205919 36.0 36.0 36.0 36.0 36.0 14 35.09591020354836 36.0 36.0 36.0 36.0 36.0 15 35.081711389408724 36.0 36.0 36.0 36.0 36.0 16 35.08861289690393 36.0 36.0 36.0 36.0 36.0 17 35.0701832588488 36.0 36.0 36.0 36.0 36.0 18 35.06403492255018 36.0 36.0 36.0 36.0 36.0 19 35.05316389543217 36.0 36.0 36.0 36.0 36.0 20 35.04333424277475 36.0 36.0 36.0 36.0 36.0 21 35.05287953487836 36.0 36.0 36.0 36.0 36.0 22 35.04198545149924 36.0 36.0 36.0 36.0 36.0 23 34.972889679633255 36.0 36.0 36.0 36.0 36.0 24 34.96223000157551 36.0 36.0 36.0 36.0 36.0 25 34.944945491156005 36.0 36.0 36.0 36.0 36.0 26 34.89879069910427 36.0 36.0 36.0 36.0 36.0 27 34.90082733550318 36.0 36.0 36.0 36.0 36.0 28 34.86096690273716 36.0 36.0 36.0 32.0 36.0 29 34.87313676589825 36.0 36.0 36.0 32.0 36.0 30 34.84812456529341 36.0 36.0 36.0 32.0 36.0 31 34.831293494675926 36.0 36.0 36.0 32.0 36.0 32 34.78405121564137 36.0 36.0 36.0 32.0 36.0 33 34.781803230182184 36.0 36.0 36.0 32.0 36.0 34 34.7661211299105 36.0 36.0 36.0 32.0 36.0 35 34.731425299635326 36.0 36.0 36.0 32.0 36.0 36 34.700991034957134 36.0 36.0 36.0 32.0 36.0 37 34.699296399764826 36.0 36.0 36.0 32.0 36.0 38 34.68759150453632 36.0 36.0 36.0 32.0 36.0 39 34.67980617369819 36.0 36.0 36.0 32.0 36.0 40 34.662767596730625 36.0 36.0 36.0 32.0 36.0 41 34.644595420258 36.0 36.0 36.0 32.0 36.0 42 34.60262533959951 36.0 36.0 36.0 32.0 36.0 43 34.57445058851106 36.0 36.0 36.0 32.0 36.0 44 34.54743249318879 36.0 36.0 36.0 32.0 36.0 45 34.52238955090246 36.0 36.0 36.0 32.0 36.0 46 34.510461778483126 36.0 36.0 36.0 32.0 36.0 47 34.47033619871423 36.0 36.0 36.0 32.0 36.0 48 34.437796128853755 36.0 36.0 36.0 32.0 36.0 49 34.41154657556882 36.0 36.0 36.0 32.0 36.0 50 33.86813739994543 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 2.0 20 4.0 21 4.0 22 23.0 23 76.0 24 184.0 25 451.0 26 897.0 27 1713.0 28 2797.0 29 4281.0 30 6242.0 31 8782.0 32 12182.0 33 19020.0 34 39328.0 35 164247.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.694465795541895 18.508455034588778 12.751345119139124 26.045734050730207 2 15.378526166935016 21.093789027525332 38.03091844616171 25.496766359377943 3 17.67492977447134 24.51495390669131 29.49126359839067 28.318852720446674 4 12.361230128384948 17.06970292007547 36.29209208670691 34.276974864832674 5 13.815695934028351 37.12596019720789 34.27466923872068 14.783674630043075 6 32.92318806607925 36.64408433980318 17.28835312969531 13.144374464422267 7 29.327179873421127 31.09136812010775 21.28899870500667 18.292453301464455 8 26.693002040479108 34.59591981032383 19.71425607052142 18.99682207867565 9 26.738935791662023 15.017811098600859 18.727207750037465 39.51604535969965 10 15.06622961906921 28.299088117864514 33.37842147937794 23.256260783688337 11 35.72759796028943 22.07406439613731 22.8564401901373 19.341897453435962 12 23.426878427243487 24.54511568567926 29.98950932056519 22.038496566512062 13 29.373246743265575 20.96337854974446 25.354494101371866 24.308880605618107 14 22.694836510638623 20.269299199557317 26.416145655206336 30.61971863459772 15 24.433650117785405 28.089416991072902 22.855748427286247 24.621184463855446 16 24.435119431891543 27.077377109656 24.47738940637585 24.01011405207661 17 23.26030903075321 26.765629263006613 26.02629182309699 23.947769883143184 18 23.347538551989945 26.951232165021345 26.551206034592077 23.15002324839663 19 24.640994800813118 25.753075128826858 26.32525467561762 23.280675394742403 20 24.869827191994805 25.74789321794867 26.080674477675604 23.301605112380923 21 25.2193226839025 25.57554191820407 25.622422982481087 23.58271241541234 22 24.943896215684465 25.6471148821052 25.685542131636385 23.72344677057395 23 24.52292203051147 25.663835837528342 25.955885178495947 23.857356953464244 24 24.429355344461865 25.564880568108457 25.572950290510004 24.43281379691967 25 24.44654515830288 25.650869042266617 25.772684827594155 24.129900971836342 26 23.624513386904006 26.493657216861312 26.331484876084193 23.55034452015049 27 24.353022558702587 25.92444564005995 25.899081511087196 23.823450290150262 28 24.21815554650332 25.74687377506552 26.028560668362683 24.006410010068482 29 24.386682242990652 25.850421175602555 25.793162813575996 23.969733767830792 30 23.99853969717931 26.324264084236415 25.76051033740681 23.916685881177465 31 24.017816310609465 26.13955597572739 25.489698744480442 24.352928969182702 32 23.849050803166552 26.062946737376063 25.773191914533854 24.314810544923525 33 23.95117995857367 26.056313671840474 25.817286076066114 24.17522029351974 34 24.531941711756026 25.47958681751107 26.18167424987703 23.806797220855877 35 24.18233591957667 25.965421965006936 26.05688198199237 23.795360133424026 36 24.478776349416805 25.692050498645298 25.802732460944256 24.02644069099364 37 24.037061090850397 25.366326056129644 25.900107217382285 24.696505635637674 38 23.764358650161984 25.954521173364487 26.00793977149138 24.27318040498215 39 23.97691157764481 25.80922845163844 26.131651659960724 24.082208310756023 40 24.44337701264266 26.005456711370712 25.904776543826614 23.64638973216001 41 24.30166202324911 25.442597751945435 26.44403881256605 23.811701412239408 42 24.024594101258526 25.65472187530022 26.029397636660583 24.29128638678067 43 23.785295971225235 25.079545629217453 26.587838357132977 24.547320042424335 44 23.74792970806482 25.338067625053316 26.21652467634276 24.697477990539102 45 23.593743995696116 25.474772316796678 26.437766591092494 24.49371709641471 46 23.855252236465923 25.097605213809217 26.658520089766053 24.388622459958807 47 23.527829441874047 25.27629617105 26.593218254761208 24.602656132314742 48 23.377371976666435 25.645784817812213 26.42626025070516 24.550582954816196 49 23.558119070217842 25.405309856935897 26.638435555828817 24.39813551701744 50 23.407574779427588 25.85615911955486 26.392219250514927 24.34404685050263 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 14.5 4 29.0 5 37.5 6 46.0 7 43.0 8 40.0 9 55.0 10 70.0 11 103.5 12 137.0 13 238.5 14 340.0 15 443.0 16 546.0 17 542.5 18 539.0 19 530.0 20 521.0 21 647.0 22 773.0 23 1062.5 24 1352.0 25 1612.0 26 1872.0 27 2432.0 28 2992.0 29 3494.0 30 3996.0 31 4712.5 32 5429.0 33 6429.5 34 7430.0 35 8831.0 36 10232.0 37 11178.5 38 12125.0 39 13009.5 40 13894.0 41 14573.0 42 15252.0 43 16101.0 44 16950.0 45 17837.0 46 18724.0 47 18852.5 48 18981.0 49 19179.5 50 19378.0 51 19669.0 52 19960.0 53 19323.0 54 18686.0 55 17923.0 56 17160.0 57 16110.5 58 15061.0 59 13551.5 60 12042.0 61 10141.0 62 8240.0 63 6959.5 64 5679.0 65 4789.5 66 3900.0 67 3296.0 68 2692.0 69 2215.5 70 1739.0 71 1434.5 72 1130.0 73 977.5 74 825.0 75 691.0 76 557.0 77 482.0 78 407.0 79 284.5 80 162.0 81 148.0 82 134.0 83 110.0 84 86.0 85 69.5 86 53.0 87 40.5 88 28.0 89 22.0 90 16.0 91 15.5 92 15.0 93 10.5 94 6.0 95 5.5 96 5.0 97 3.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.012680943615913431 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 7.685420373280868E-4 10 7.685420373280868E-4 11 0.0 12 7.685420373280868E-4 13 0.0011528130559921301 14 7.685420373280868E-4 15 0.005379794261296608 16 3.842710186640434E-4 17 0.0 18 0.0 19 0.0 20 7.685420373280868E-4 21 0.0 22 3.842710186640434E-4 23 0.0011528130559921301 24 3.842710186640434E-4 25 0.0015370840746561736 26 0.006148336298624694 27 0.008838233429272998 28 0.005764065279960651 29 0.0034584391679763904 30 0.004995523242632564 31 0.008453962410608955 32 0.004995523242632564 33 0.0046112522239685205 34 0.0034584391679763904 35 0.003842710186640434 36 0.010759588522593216 37 0.005379794261296608 38 0.009222504447937041 39 0.006148336298624694 40 0.0011528130559921301 41 0.003074168149312347 42 0.003074168149312347 43 0.001921355093320217 44 0.0015370840746561736 45 0.0011528130559921301 46 3.842710186640434E-4 47 0.001921355093320217 48 0.002689897130648304 49 0.0 50 3.842710186640434E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 260233.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.65759022616935 #Duplication Level Percentage of deduplicated Percentage of total 1 64.28768688752534 32.56659298936539 2 16.284336520781643 16.498504931496015 3 7.512854958184508 11.417493837010664 4 4.060098288971908 8.226991816028407 5 2.4525336088324172 6.211972128607044 6 1.5766652178047222 4.792203631644338 7 1.038909444653923 3.6840054250562915 8 0.7154353061179485 2.8993782856525647 9 0.5078175656098439 2.3152332733482908 >10 1.5553004236653771 11.07724955642529 >50 0.007601616229430139 0.25299727092464536 >100 7.60161622943014E-4 0.05737685444105351 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 7.685420373280868E-4 2 0.0 0.0 0.0 0.0 7.685420373280868E-4 3 0.0 0.0 0.0 0.0 7.685420373280868E-4 4 0.0 0.0 0.0 0.0 7.685420373280868E-4 5 0.0 0.0 0.0 0.0 7.685420373280868E-4 6 0.0 0.0 0.0 0.0 0.0011528130559921301 7 0.0 0.0 0.0 0.0 0.0011528130559921301 8 0.0 0.0 0.0 0.0 0.0011528130559921301 9 0.0 0.0 0.0 0.0 0.0011528130559921301 10 0.0 0.0 0.0 0.0 0.0015370840746561736 11 0.0 0.0 0.0 0.0 0.0015370840746561736 12 0.0 0.0 0.0 0.0 0.0038427101866404336 13 0.0 0.0 0.0 0.0 0.004226981205304477 14 0.0 0.0 0.0 0.0 0.004226981205304477 15 0.0 0.0 0.0 0.0 0.005764065279960651 16 0.0 0.0 0.0 0.0 0.005764065279960651 17 0.0 0.0 0.0 3.842710186640434E-4 0.005764065279960651 18 0.0 0.0 0.0 3.842710186640434E-4 0.005764065279960651 19 0.0 0.0 0.0 3.842710186640434E-4 0.005764065279960651 20 0.0 0.0 0.0 3.842710186640434E-4 0.005764065279960651 21 0.0 0.0 0.0 3.842710186640434E-4 0.005764065279960651 22 0.0 0.0 0.0 7.685420373280868E-4 0.005764065279960651 23 0.0 0.0 0.0 7.685420373280868E-4 0.005764065279960651 24 0.0 0.0 0.0 0.0011528130559921301 0.005764065279960651 25 0.0 0.0 0.0 0.0011528130559921301 0.005764065279960651 26 0.0 0.0 0.0 0.0015370840746561736 0.006148336298624694 27 0.0 0.0 0.0 0.0026898971306483035 0.006148336298624694 28 0.0 0.0 0.0 0.006916878335952781 0.006148336298624694 29 0.0 0.0 0.0 0.019213550933202168 0.006148336298624694 30 0.0 0.0 0.0 0.03535293371709199 0.006148336298624694 31 0.0 0.0 0.0 0.09453067059135467 0.006148336298624694 32 0.0 0.0 0.0 0.17484331349213975 0.006148336298624694 33 0.0 0.0 0.0 0.2497761621316282 0.006148336298624694 34 0.0 0.0 0.0 0.3297045340137492 0.006148336298624694 35 0.0 0.0 0.0 0.42154530747445557 0.006148336298624694 36 0.0 0.0 0.0 0.5437434914096214 0.006148336298624694 37 0.0 0.0 0.0 0.7343419166669869 0.006148336298624694 38 0.0 0.0 0.0 1.0060215268624655 0.006148336298624694 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCCTATA 20 7.8496337E-4 43.995003 2 CCGCGCG 25 0.0023485047 35.20277 21 GGTATCA 75 6.002665E-11 32.263004 1 GTATCAA 295 0.0 32.064156 1 TAGGACG 50 2.3541452E-6 30.796503 4 GAATTAC 30 0.005740022 29.330002 1 TCTACAC 55 1.5901611E-4 23.997274 3 TGGGGGG 65 1.8052062E-5 23.69417 19 TAGAGTG 50 0.0025767474 21.997503 5 TATAACC 50 0.0025767474 21.997503 3 CTAGGAC 60 2.866597E-4 21.997501 3 TATCAAC 435 0.0 21.238966 2 AGGATAC 65 4.921638E-4 20.305387 5 GTCTAAG 55 0.0044772667 19.997728 1 CCTTTAC 55 0.0044772667 19.997728 1 TCTCCCG 55 0.0044772667 19.997728 10 ATCAACG 470 0.0 19.657343 3 CAACGCA 480 0.0 19.247814 5 TCAACGC 480 0.0 19.247814 4 CTGTAGG 70 8.1061316E-4 18.855003 1 >>END_MODULE