FastQCFastQC Report
Thu 2 Feb 2017
SRR4064026_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4064026_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences661767
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCTCTAA450.001398035624.44297411
TAGGACG1001.7425918E-924.1985444
GGCGTTA1900.023.15650442
CGCGAGC500.002580116321.99867640
GTATTAG1451.2732926E-1121.2417091
CGTTATT2250.019.5543844
GCGTTAT2150.019.44069143
TCTAGAT2050.019.3159122
CCGTCGT1605.2750693E-1119.2488429
GTCCTAA1152.017623E-719.130731
CGGCGTT2300.019.12928441
CGTCGTA1504.638423E-1019.0655210
CCGATCG1851.8189894E-1219.0273218
CTAGATA1851.8189894E-1219.0258853
TAAGTAG1051.7912189E-618.8560095
TCGCACG1901.8189894E-1218.52800222
GGGTAAG951.5951175E-518.5266021
GACAACG600.00740798518.33361819
CTATATG600.007411214518.3322323
GCGGCGT2400.018.33223240
Produced by FastQC (version 0.11.5)