##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064020_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5968524 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.318188047832262 32.0 32.0 32.0 32.0 32.0 2 31.418241092772686 32.0 32.0 32.0 32.0 32.0 3 31.498120473336456 32.0 32.0 32.0 32.0 32.0 4 31.58241082719949 32.0 32.0 32.0 32.0 32.0 5 31.531469254375118 32.0 32.0 32.0 32.0 32.0 6 35.12895466282786 36.0 36.0 36.0 36.0 36.0 7 35.144738967289065 36.0 36.0 36.0 36.0 36.0 8 35.09105886145385 36.0 36.0 36.0 36.0 36.0 9 35.20343153516682 36.0 36.0 36.0 36.0 36.0 10 35.05823332535816 36.0 36.0 36.0 36.0 36.0 11 35.19886239881083 36.0 36.0 36.0 36.0 36.0 12 35.10523456050441 36.0 36.0 36.0 36.0 36.0 13 35.14496331086212 36.0 36.0 36.0 36.0 36.0 14 35.09101613732307 36.0 36.0 36.0 36.0 36.0 15 35.06680211053855 36.0 36.0 36.0 36.0 36.0 16 35.0785338217623 36.0 36.0 36.0 36.0 36.0 17 35.041407389833736 36.0 36.0 36.0 36.0 36.0 18 35.03741863147405 36.0 36.0 36.0 36.0 36.0 19 35.037424160479205 36.0 36.0 36.0 36.0 36.0 20 35.030943998884815 36.0 36.0 36.0 36.0 36.0 21 35.02380286985526 36.0 36.0 36.0 36.0 36.0 22 35.01011958735526 36.0 36.0 36.0 36.0 36.0 23 34.959932975053796 36.0 36.0 36.0 36.0 36.0 24 34.931151487369405 36.0 36.0 36.0 36.0 36.0 25 34.90762389495292 36.0 36.0 36.0 32.0 36.0 26 34.847680934180715 36.0 36.0 36.0 32.0 36.0 27 34.84172602807662 36.0 36.0 36.0 32.0 36.0 28 34.826916336434266 36.0 36.0 36.0 32.0 36.0 29 34.795861254809395 36.0 36.0 36.0 32.0 36.0 30 34.7812299992427 36.0 36.0 36.0 32.0 36.0 31 34.77387793028896 36.0 36.0 36.0 32.0 36.0 32 34.742534670213274 36.0 36.0 36.0 32.0 36.0 33 34.71816683655791 36.0 36.0 36.0 32.0 36.0 34 34.714681385213495 36.0 36.0 36.0 32.0 36.0 35 34.67773925345697 36.0 36.0 36.0 32.0 36.0 36 34.65155019901068 36.0 36.0 36.0 32.0 36.0 37 34.64596205024894 36.0 36.0 36.0 32.0 36.0 38 34.6070735411301 36.0 36.0 36.0 32.0 36.0 39 34.6099921856727 36.0 36.0 36.0 32.0 36.0 40 34.5875713995621 36.0 36.0 36.0 32.0 36.0 41 34.57571587213187 36.0 36.0 36.0 32.0 36.0 42 34.51305800227996 36.0 36.0 36.0 32.0 36.0 43 34.5016798122953 36.0 36.0 36.0 32.0 36.0 44 34.44681918008539 36.0 36.0 36.0 32.0 36.0 45 34.42203700613418 36.0 36.0 36.0 32.0 36.0 46 34.39966112224731 36.0 36.0 36.0 32.0 36.0 47 34.37719610409542 36.0 36.0 36.0 32.0 36.0 48 34.33346418645548 36.0 36.0 36.0 32.0 36.0 49 34.31770183046931 36.0 36.0 36.0 32.0 36.0 50 33.7296036675064 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 0.0 17 6.0 18 9.0 19 20.0 20 60.0 21 231.0 22 672.0 23 1885.0 24 4833.0 25 10922.0 26 22178.0 27 39365.0 28 64518.0 29 99383.0 30 142725.0 31 203382.0 32 292271.0 33 471960.0 34 995471.0 35 3618632.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.30144482698587 18.06409906465855 12.091576699054505 26.54287940930107 2 16.05718892759954 19.897836943230942 37.0416309094851 27.003343219684417 3 17.935993038124945 23.687515152449347 28.986629319526642 29.389862489899066 4 12.160929569856801 15.978020696574227 36.05390545468193 35.807144278887044 5 14.157989479475997 36.84812191422871 33.53458912119646 15.459299485098828 6 34.31105871764039 36.021786331034214 16.45393081995465 13.213224131370746 7 30.556200141509187 30.59672947232956 20.302899363443213 18.54417102271804 8 28.37353563017182 32.95319461783091 18.89877948028348 19.77449027171379 9 27.36281914258184 13.919704151142684 18.25282028693197 40.464656419343505 10 15.48514389651193 26.754222532594696 31.627710751323292 26.132922819570087 11 37.33317271291406 21.09270585034187 22.36358978594872 19.21053165079535 12 24.514477137860446 23.679981315282163 28.624914007071105 23.180627539786286 13 29.237871140649936 19.510238096993344 25.38220709686802 25.8696836654887 14 23.657185346823695 19.34098102909471 25.235083876908597 31.766749747172994 15 25.38279808789452 27.159906773967084 22.083042211420693 25.374252926717705 16 25.98785383655339 25.831180492015626 23.37302916376042 24.80793650767056 17 24.13129276182855 25.986558820907817 24.9192932792094 24.962855138054234 18 24.706358775090862 25.0859008650068 25.892936727235682 24.314803632666656 19 25.535509281691755 24.90168423549943 25.41745664422226 24.145349838586558 20 25.943051095313656 24.165996897363865 24.954355996919144 24.93659601040333 21 26.969146810836314 24.169912025150605 24.523684582653935 24.337256581359142 22 25.9484521607891 24.07079886216234 25.069891768704906 24.91085720834365 23 24.490455848666123 24.070566134849926 25.51527426115093 25.923703755333023 24 24.580434431125433 24.891668670242666 25.340240713948823 25.18765618468307 25 24.875293628799582 24.299513103970565 25.513569755479676 25.31162351175018 26 24.739909322850227 24.990068206414424 25.529811549766958 24.74021092096839 27 25.256147515232126 24.788078971968332 24.90573701065809 25.050036502141452 28 24.690723394102356 24.518194683160075 25.69580324790283 25.095278674834738 29 24.6151381883447 24.786843188163747 25.54064958373936 25.057369039752185 30 24.639666289506522 24.940874994784938 25.536640580454662 24.882818135253885 31 25.2009771970597 24.583576990293377 24.874842705120066 25.340603107526867 32 25.040228914419142 24.743027546669563 24.65157839427486 25.56516514463644 33 24.671218311041468 24.448623598960232 25.19857593001361 25.681582159984696 34 25.202003032328363 24.599022410042572 25.44888864612688 24.75008591150219 35 25.719362020687814 24.30892053139028 25.369834580580473 24.601882867341427 36 24.639250866319028 24.905115844041294 25.122908305151398 25.332724984488276 37 25.696426097043158 24.60626514147345 24.87780006779158 24.819508693691812 38 24.943985110059288 24.269762214027484 25.34607584111141 25.440176834801818 39 25.384480439740365 24.569149175914074 24.75711050259465 25.289259881750915 40 25.506269389735614 24.684050771702264 25.124841581378078 24.684838257184047 41 24.556888726773362 25.03983959275567 25.573407811157228 24.829863869313737 42 25.773421289668818 24.774680585267514 25.161533646448238 24.29036447861543 43 25.179758117577517 24.00082299603732 25.40025135558941 25.41916753079575 44 24.652049002411182 24.684369000212953 25.172084301411374 25.491497695964487 45 24.99253573548054 24.853102268968865 25.061029368152944 25.09333262739765 46 24.742559262764726 24.643639289927506 25.10846598478234 25.50533546252543 47 24.811938616013645 24.625456383012054 25.576616300825833 24.985988700148464 48 25.592246257427213 25.035248016183846 24.633131610521442 24.739374115867495 49 24.83241188492523 24.996104550186963 24.984326050322174 25.187157514565634 50 24.813958768085772 25.224619184090972 24.823374971830976 25.138047075992283 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 41.0 1 95.0 2 149.0 3 377.5 4 606.0 5 770.5 6 935.0 7 864.5 8 794.0 9 1080.5 10 1367.0 11 2079.0 12 2791.0 13 5343.0 14 7895.0 15 10223.5 16 12552.0 17 12681.5 18 12811.0 19 12798.5 20 12786.0 21 15190.0 22 17594.0 23 21001.5 24 24409.0 25 31575.0 26 38741.0 27 47122.5 28 55504.0 29 64801.0 30 74098.0 31 83807.5 32 93517.0 33 105255.5 34 116994.0 35 136326.5 36 155659.0 37 182625.0 38 209591.0 39 234669.0 40 259747.0 41 284217.5 42 308688.0 43 318858.0 44 329028.0 45 357867.5 46 386707.0 47 414597.0 48 442487.0 49 456097.0 50 469707.0 51 460397.0 52 451087.0 53 446337.5 54 441588.0 55 439932.0 56 438276.0 57 422499.0 58 406722.0 59 372542.5 60 338363.0 61 296626.5 62 254890.0 63 223273.5 64 191657.0 65 161511.5 66 131366.0 67 113244.0 68 95122.0 69 85006.5 70 74891.0 71 57485.5 72 40080.0 73 33897.0 74 27714.0 75 21339.0 76 14964.0 77 12831.5 78 10699.0 79 8837.0 80 6975.0 81 5473.5 82 3972.0 83 3296.0 84 2620.0 85 1834.0 86 1048.0 87 768.5 88 489.0 89 369.0 90 249.0 91 207.5 92 166.0 93 141.5 94 117.0 95 122.0 96 127.0 97 98.0 98 69.0 99 72.0 100 75.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.009097726674132499 2 4.356185884483333E-4 3 2.848275386008333E-4 4 0.0 5 0.0 6 1.843001720358333E-4 7 1.1728192765916665E-4 8 1.6754561094166666E-5 9 0.0011895738376858332 10 0.0011393101544033332 11 1.6754561094166666E-5 12 1.6754561094166665E-4 13 5.361459550133333E-4 14 2.6807297750666665E-4 15 0.003920567296035 16 9.215008601791665E-4 17 0.0 18 2.6807297750666665E-4 19 0.0 20 8.544826158024999E-4 21 0.0 22 1.6754561094166665E-4 23 8.712371768966666E-4 24 4.858822717308333E-4 25 0.001742474353793333 26 0.005311195866850833 27 0.006383487776877499 28 0.004054603784788333 29 0.0024796750419366666 30 0.003970830979317499 31 0.007271479514868333 32 0.0030158209969499998 33 0.004657767984178333 34 0.002898539069290833 35 0.0030158209969499998 36 0.007656834420034165 37 0.0038703036127524996 38 0.00784113459207 39 0.004607504300895833 40 0.0026807297750666664 41 0.003602230635245833 42 0.0018094925981699999 43 0.0014576468151924998 44 0.001390628570815833 45 0.0014408922540983331 46 0.0010555373489325 47 0.002127829258959166 48 0.0017257197926991664 49 3.686003440716666E-4 50 0.0014911559373808332 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 5968524.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.014883290515638 #Duplication Level Percentage of deduplicated Percentage of total 1 62.097899112576314 19.259590935627692 2 15.359623703823996 9.527538731206775 3 7.153070561184584 6.655549458718892 4 4.127774526744629 5.120897807861924 5 2.700619671562268 4.187970196278721 6 1.7506562534415242 3.257783962938014 7 1.2377666658150672 2.6872432076801487 8 0.9107369820668709 2.259712096572835 9 0.6393322185125428 1.784593272692966 >10 3.5403128087611995 19.68408282604933 >50 0.28730462705751725 6.187384915361565 >100 0.16923110326116342 9.651229592755831 >500 0.015065855728124264 3.2076854943518307 >1k 0.010333963067786889 6.096492101023021 >5k 2.7194639651881677E-4 0.4322454008805051 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 5.0263683282499994E-5 2 0.0 0.0 0.0 0.0 5.0263683282499994E-5 3 0.0 0.0 0.0 0.0 5.0263683282499994E-5 4 0.0 0.0 0.0 0.0 5.0263683282499994E-5 5 1.6754561094166666E-5 0.0 0.0 0.0 5.0263683282499994E-5 6 1.6754561094166666E-5 0.0 0.0 0.0 5.0263683282499994E-5 7 1.6754561094166666E-5 0.0 0.0 0.0 5.0263683282499994E-5 8 1.6754561094166666E-5 0.0 0.0 1.6754561094166666E-5 5.0263683282499994E-5 9 1.6754561094166666E-5 0.0 0.0 1.6754561094166666E-5 5.0263683282499994E-5 10 1.6754561094166666E-5 0.0 0.0 3.350912218833333E-5 5.0263683282499994E-5 11 1.6754561094166666E-5 0.0 0.0 3.350912218833333E-5 5.0263683282499994E-5 12 1.6754561094166666E-5 0.0 0.0 3.350912218833333E-5 2.1780929422416664E-4 13 1.6754561094166666E-5 0.0 0.0 3.350912218833333E-5 2.345638553183333E-4 14 1.6754561094166666E-5 0.0 0.0 3.350912218833333E-5 2.345638553183333E-4 15 1.6754561094166666E-5 0.0 0.0 3.350912218833333E-5 2.345638553183333E-4 16 1.6754561094166666E-5 0.0 0.0 1.0052736656499999E-4 2.345638553183333E-4 17 1.6754561094166666E-5 0.0 0.0 1.1728192765916665E-4 2.345638553183333E-4 18 1.6754561094166666E-5 0.0 0.0 1.507910498475E-4 2.6807297750666665E-4 19 1.6754561094166666E-5 0.0 0.0 2.0105473312999998E-4 2.6807297750666665E-4 20 1.6754561094166666E-5 0.0 0.0 2.848275386008333E-4 3.01582099695E-4 21 1.6754561094166666E-5 0.0 0.0 4.0210946625999995E-4 3.01582099695E-4 22 1.6754561094166666E-5 0.0 0.0 4.858822717308333E-4 3.686003440716666E-4 23 1.6754561094166666E-5 0.0 0.0 6.869370048608333E-4 3.686003440716666E-4 24 1.6754561094166666E-5 0.0 0.0 9.717645434616666E-4 3.686003440716666E-4 25 1.6754561094166666E-5 0.0 0.0 0.00120632839878 3.686003440716666E-4 26 1.6754561094166666E-5 0.0 0.0 0.0013403648875333332 4.0210946625999995E-4 27 1.6754561094166666E-5 0.0 0.0 0.0017927380370758332 4.0210946625999995E-4 28 1.6754561094166666E-5 0.0 0.0 0.003551966951963333 4.0210946625999995E-4 29 1.6754561094166666E-5 0.0 0.0 0.008276753180518332 4.0210946625999995E-4 30 1.6754561094166666E-5 0.0 0.0 0.0156320055008575 4.0210946625999995E-4 31 1.6754561094166666E-5 0.0 0.0 0.03546940583635083 4.5237314954249997E-4 32 1.6754561094166666E-5 0.0 0.0 0.05763569016393333 4.5237314954249997E-4 33 1.6754561094166666E-5 0.0 0.0 0.07924907397540833 4.5237314954249997E-4 34 1.6754561094166666E-5 0.0 0.0 0.10374424229507999 4.691277106366666E-4 35 1.6754561094166666E-5 0.0 0.0 0.13247831457157583 4.691277106366666E-4 36 1.6754561094166666E-5 0.0 0.0 0.17746431110941333 4.691277106366666E-4 37 1.6754561094166666E-5 0.0 0.0 0.24779995858272497 4.691277106366666E-4 38 1.6754561094166666E-5 0.0 0.0 0.3478581974370883 4.858822717308333E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 8685 0.0 28.04159 1 GGTATCA 3670 0.0 26.25626 1 CGCAATA 1520 0.0 19.105997 36 CGTCGTA 1555 0.0 18.816025 10 ACCGTCG 1605 0.0 18.366768 8 ATACCGT 1685 0.0 18.147394 6 TCAACGC 13255 0.0 18.140104 4 TACCGTC 1740 0.0 18.079489 7 TATCAAC 13725 0.0 17.871237 2 CCGTCGT 1630 0.0 17.815443 9 ATCAACG 13615 0.0 17.69277 3 CAACGCA 13630 0.0 17.65716 5 AACGCAG 13710 0.0 17.554127 6 CTAGCGG 1635 0.0 17.493614 29 ATACGAA 1705 0.0 16.902744 40 TAGCGGC 1740 0.0 16.43824 30 TCTAGCG 1775 0.0 16.23779 28 CGAATGC 1810 0.0 15.800786 43 CAATACG 1815 0.0 15.636572 38 AATACGA 1865 0.0 15.452771 39 >>END_MODULE