FastQCFastQC Report
Thu 2 Feb 2017
SRR4064019_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4064019_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2786438
Sequences flagged as poor quality0
Sequence length50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA36650.025.3904441
ATACCGT6300.019.9031876
CGTCGTA6200.019.8701110
ACCGTCG6200.019.5145848
CCGTCGT6350.019.4007369
ACCGTAT1152.0254447E-719.1289228
GTCGTAG6450.019.09994911
TACCGTC6600.018.9984977
AACGCAG50800.018.100936
TAGGACC19350.017.6213464
TGTAGGA25500.017.5126532
GTATAGG2900.017.4475231
GTAGGAC24450.017.3646773
TTAGGAC15400.017.2843463
TCAACGC54050.016.931134
TAGGACG22050.016.8603444
GGTATCA17300.016.78541
CAACGCA54900.016.6689915
CTAGCGG6900.016.58018329
ATCAACG55900.016.410153
Produced by FastQC (version 0.11.5)