##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064013_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1290607 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.259567009941833 32.0 32.0 32.0 32.0 32.0 2 31.327256864405662 32.0 32.0 32.0 32.0 32.0 3 31.426967310730532 32.0 32.0 32.0 32.0 32.0 4 31.512393005771703 32.0 32.0 32.0 32.0 32.0 5 31.457557567873103 32.0 32.0 32.0 32.0 32.0 6 35.02294269285693 36.0 36.0 36.0 36.0 36.0 7 35.03925672183709 36.0 36.0 36.0 36.0 36.0 8 34.988071504338656 36.0 36.0 36.0 36.0 36.0 9 35.11240214875636 36.0 36.0 36.0 36.0 36.0 10 34.942093913949016 36.0 36.0 36.0 36.0 36.0 11 35.11213560750871 36.0 36.0 36.0 36.0 36.0 12 35.01067017302711 36.0 36.0 36.0 36.0 36.0 13 35.06250624706049 36.0 36.0 36.0 36.0 36.0 14 34.996613221530644 36.0 36.0 36.0 36.0 36.0 15 34.96947637816934 36.0 36.0 36.0 36.0 36.0 16 34.97570445534543 36.0 36.0 36.0 36.0 36.0 17 34.94355214251898 36.0 36.0 36.0 36.0 36.0 18 34.948045377097756 36.0 36.0 36.0 36.0 36.0 19 34.9417832074365 36.0 36.0 36.0 36.0 36.0 20 34.932245059882675 36.0 36.0 36.0 36.0 36.0 21 34.93182665211021 36.0 36.0 36.0 32.0 36.0 22 34.91154239826686 36.0 36.0 36.0 32.0 36.0 23 34.860357955597635 36.0 36.0 36.0 32.0 36.0 24 34.83333423730074 36.0 36.0 36.0 32.0 36.0 25 34.80231937375204 36.0 36.0 36.0 32.0 36.0 26 34.74404524382713 36.0 36.0 36.0 32.0 36.0 27 34.74851445870044 36.0 36.0 36.0 32.0 36.0 28 34.71745697954528 36.0 36.0 36.0 32.0 36.0 29 34.68925862016865 36.0 36.0 36.0 32.0 36.0 30 34.67135541648232 36.0 36.0 36.0 32.0 36.0 31 34.663289444424215 36.0 36.0 36.0 32.0 36.0 32 34.615814884004195 36.0 36.0 36.0 32.0 36.0 33 34.58409182655913 36.0 36.0 36.0 32.0 36.0 34 34.573268237348785 36.0 36.0 36.0 32.0 36.0 35 34.53607643535174 36.0 36.0 36.0 32.0 36.0 36 34.50681655995977 36.0 36.0 36.0 32.0 36.0 37 34.498219829894 36.0 36.0 36.0 32.0 36.0 38 34.45133878864751 36.0 36.0 36.0 32.0 36.0 39 34.44720507482138 36.0 36.0 36.0 32.0 36.0 40 34.423665763474084 36.0 36.0 36.0 32.0 36.0 41 34.411308787260566 36.0 36.0 36.0 32.0 36.0 42 34.327140640024425 36.0 36.0 36.0 32.0 36.0 43 34.32399638309725 36.0 36.0 36.0 32.0 36.0 44 34.25029850295249 36.0 36.0 36.0 32.0 36.0 45 34.21565201490461 36.0 36.0 36.0 32.0 36.0 46 34.184559668435085 36.0 36.0 36.0 32.0 36.0 47 34.14376878476562 36.0 36.0 36.0 32.0 36.0 48 34.085655819316024 36.0 36.0 36.0 32.0 36.0 49 34.062096362409314 36.0 36.0 36.0 32.0 36.0 50 33.45496576417143 36.0 36.0 36.0 21.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 5.0 20 7.0 21 44.0 22 141.0 23 412.0 24 1108.0 25 2470.0 26 5066.0 27 9227.0 28 15816.0 29 24193.0 30 35004.0 31 49869.0 32 72437.0 33 116524.0 34 236122.0 35 722160.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.87886518051974 18.05522837730609 11.970436173378298 26.09547026879587 2 15.477428362888016 20.54692306381053 38.060920407685714 25.914728165615735 3 18.366643266806445 24.541494460741696 29.000330077498475 28.091532194953377 4 11.810566655844886 16.17920869792276 36.62935347476032 35.38087117147203 5 13.664113087872606 37.641512869525734 33.732964411319635 14.961409631282024 6 33.804714691725735 36.50608552274749 16.743400764293305 12.94579902123347 7 29.610422414948673 30.94235795205807 20.727442908469918 18.719776724523342 8 27.631571810783605 34.11836445951401 19.174620934180584 19.075442795521795 9 27.272360983584964 13.91105583901874 18.362603005613735 40.45398017178257 10 15.070788999810942 27.722850527973126 32.319873918716624 24.886486553499314 11 37.36528625677685 21.136256040762216 22.571007285719045 18.92745041674189 12 24.287794155135234 23.908669048499036 29.64590970267387 22.157627093691865 13 29.664637642530163 19.828622877350448 25.529674477996352 24.977065002123037 14 23.14476831444429 20.0490931786361 25.891150443163564 30.91498806375605 15 24.768104364077892 28.14191369786271 22.69690885887433 24.393073079185065 16 25.044088021075467 26.21137455447079 24.634588563458856 24.109948860994887 17 23.39302359277456 26.326139560687334 25.790732577771546 24.490104268766558 18 23.952332433238674 25.732350331821124 27.126270237601744 23.18904699733846 19 25.204748776931147 25.081085939473397 25.955636344476936 23.758528939118523 20 25.335968808209543 24.957926415392578 25.770186797417626 23.935917978980253 21 26.487536484770345 24.50862268684425 25.068049375216468 23.935791453168935 22 25.13708665767348 24.90603258776684 25.804137123074643 24.15274363148503 23 24.282675820067485 24.725494829904036 26.048915422731376 24.9429139272971 24 24.382731832952892 25.43727520250177 25.93029940973465 24.249693554810687 25 24.59948240326055 25.10359683243193 26.103767298423964 24.193153465883558 26 24.054547455108146 25.937626399988844 26.462675487739297 23.545150657163713 27 24.420197655839555 25.35485530706084 26.066735579135948 24.158211457963652 28 23.834182839307772 25.567391988246907 26.235244708861465 24.363180463583856 29 23.845144753531958 25.22375719932154 26.12103306050878 24.810064986637716 30 23.78582774785944 25.752741079384762 26.323273023129673 24.13815814962613 31 24.513426914269996 25.349223753491852 25.595251471323245 24.542097860914915 32 24.226774567477268 25.627010742556767 25.573080999993802 24.573133689972167 33 24.05962428363765 25.25919221911932 26.008796263292805 24.67238723395023 34 24.607093737287645 25.446254576448485 26.09325300738043 23.853398678883444 35 24.784282366943135 25.55308637383618 26.11841534322659 23.544215915994098 36 23.958416472234642 25.948170918341653 25.685096833734853 24.408315775688855 37 24.558000925181915 25.787780005067578 25.525180212884823 24.129038856865677 38 24.17520340953119 25.634637737311124 25.827896164277416 24.36226268888028 39 24.63174729612244 25.319746403482533 25.57304847375623 24.47545782663879 40 25.070820871236187 25.69209192766043 25.707278897859876 23.529808303243502 41 23.96146181049526 25.559910240793947 26.687944185642863 23.79068376306793 42 25.017279106383505 26.18311513618725 25.55145919341441 23.248146564014828 43 24.20180165102271 25.308656324142216 26.146100167829694 24.34344185700538 44 23.95352531196851 25.962908580925852 25.410140284132517 24.673425822973126 45 23.936863034067336 26.19482082239842 25.632830230491304 24.23548591304294 46 24.025622330200147 25.592111533225427 25.370740427074995 25.011525709499434 47 24.303451631749496 25.625649902601783 25.787592845996134 24.28330561965259 48 24.864324567248833 25.84132715523253 24.943358799919416 24.35098947759922 49 24.255328710687948 26.151574109156726 25.230144358877205 24.362952821278117 50 24.32331494127118 26.20864982221351 25.050035138885768 24.418000097629537 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 17.0 1 20.5 2 24.0 3 77.5 4 131.0 5 150.5 6 170.0 7 174.5 8 179.0 9 258.5 10 338.0 11 536.0 12 734.0 13 1359.5 14 1985.0 15 2854.5 16 3724.0 17 4231.5 18 4739.0 19 4964.0 20 5189.0 21 5730.5 22 6272.0 23 7195.0 24 8118.0 25 9309.5 26 10501.0 27 13605.0 28 16709.0 29 19379.5 30 22050.0 31 24854.5 32 27659.0 33 31549.5 34 35440.0 35 40561.0 36 45682.0 37 50907.0 38 56132.0 39 58856.5 40 61581.0 41 65712.0 42 69843.0 43 70144.0 44 70445.0 45 75559.0 46 80673.0 47 85518.0 48 90363.0 49 92817.0 50 95271.0 51 92329.0 52 89387.0 53 88132.0 54 86877.0 55 86241.5 56 85606.0 57 82327.5 58 79049.0 59 72100.0 60 65151.0 61 57654.0 62 50157.0 63 43665.5 64 37174.0 65 31557.5 66 25941.0 67 22529.0 68 19117.0 69 16991.5 70 14866.0 71 11575.0 72 8284.0 73 7078.5 74 5873.0 75 4552.5 76 3232.0 77 2742.5 78 2253.0 79 1884.0 80 1515.0 81 1253.5 82 992.0 83 796.0 84 600.0 85 444.0 86 288.0 87 190.5 88 93.0 89 74.0 90 55.0 91 52.5 92 50.0 93 35.0 94 20.0 95 22.5 96 25.0 97 19.0 98 13.0 99 16.5 100 20.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.00860060421181661 2 3.8741460413588334E-4 3 7.748292082717666E-5 4 0.0 5 0.0 6 2.3244876248153002E-4 7 3.0993168330870665E-4 8 0.0 9 0.0017046242581978868 10 8.523121290989434E-4 11 0.0 12 3.0993168330870665E-4 13 2.3244876248153002E-4 14 0.0 15 0.0037191801997044803 16 5.423804457902367E-4 17 0.0 18 1.5496584165435333E-4 19 7.748292082717666E-5 20 8.523121290989434E-4 21 0.0 22 0.0 23 9.297950499261201E-4 24 7.748292082717666E-5 25 0.00209203886233377 26 0.004726458170457777 27 0.0062761165870013095 28 0.004106594803840363 29 0.0026344193081240066 30 0.00441652648714907 31 0.00790325792437202 32 0.00302183391225989 33 0.004571492328803424 34 0.0024794534664696532 35 0.0024019705456424767 36 0.0074383603994089605 37 0.003874146041358833 38 0.008290672528507903 39 0.004106594803840363 40 0.00209203886233377 41 0.0033317655955685966 42 0.0024019705456424767 43 0.0010072779707532968 44 9.297950499261201E-4 45 0.0012397267332348266 46 0.0010847608915804734 47 0.0022470047039881234 48 0.00209203886233377 49 3.0993168330870665E-4 50 0.0010847608915804734 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1290607.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.11142716650011 #Duplication Level Percentage of deduplicated Percentage of total 1 75.02756886599764 42.84931534769996 2 14.787525967426026 16.890734245227613 3 4.911844930350606 8.415674219785844 4 2.15027005979082 4.91219967632197 5 1.0198546449029697 2.912267713639639 6 0.5503139913754709 1.8857530462287706 7 0.3549549505441949 1.4190388663775404 8 0.22379962149218358 1.022521262619291 9 0.1609558784728441 0.8273177937379691 >10 0.6842899003400863 6.879390119883974 >50 0.060545133564613246 2.3930823472074545 >100 0.061527680060001554 6.89594685239421 >500 0.005866253215674899 2.2760230429123993 >1k 6.821224669389417E-4 0.4207354659635409 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.5496584165435333E-4 2 0.0 0.0 0.0 0.0 1.5496584165435333E-4 3 0.0 0.0 0.0 0.0 1.5496584165435333E-4 4 0.0 0.0 0.0 0.0 1.5496584165435333E-4 5 0.0 0.0 0.0 0.0 1.5496584165435333E-4 6 0.0 0.0 0.0 0.0 1.5496584165435333E-4 7 0.0 0.0 0.0 0.0 1.5496584165435333E-4 8 0.0 0.0 0.0 0.0 1.5496584165435333E-4 9 0.0 0.0 0.0 0.0 1.5496584165435333E-4 10 0.0 0.0 0.0 4.6489752496306003E-4 1.5496584165435333E-4 11 0.0 0.0 0.0 4.6489752496306003E-4 1.5496584165435333E-4 12 0.0 0.0 0.0 4.6489752496306003E-4 4.6489752496306003E-4 13 0.0 0.0 0.0 4.6489752496306003E-4 5.423804457902367E-4 14 0.0 0.0 0.0 4.6489752496306003E-4 5.423804457902367E-4 15 0.0 0.0 0.0 6.198633666174133E-4 7.748292082717667E-4 16 0.0 0.0 0.0 6.198633666174133E-4 7.748292082717667E-4 17 0.0 0.0 0.0 6.198633666174133E-4 7.748292082717667E-4 18 0.0 0.0 0.0 6.198633666174133E-4 7.748292082717667E-4 19 0.0 0.0 0.0 6.198633666174133E-4 7.748292082717667E-4 20 0.0 0.0 0.0 8.523121290989434E-4 8.523121290989434E-4 21 0.0 0.0 0.0 9.297950499261201E-4 8.523121290989434E-4 22 0.0 0.0 0.0 9.297950499261201E-4 8.523121290989434E-4 23 0.0 0.0 0.0 0.0010847608915804734 8.523121290989434E-4 24 0.0 0.0 0.0 0.0018595900998522401 8.523121290989434E-4 25 0.0 0.0 0.0 0.0019370730206794168 8.523121290989434E-4 26 0.0 0.0 0.0 0.0020145559415065935 9.297950499261201E-4 27 0.0 0.0 0.0 0.0023244876248153003 9.297950499261201E-4 28 0.0 0.0 0.0 0.0038741460413588336 9.297950499261201E-4 29 0.0 0.0 0.0 0.007050945795273077 9.297950499261201E-4 30 0.0 0.0 0.0 0.012164818569866738 9.297950499261201E-4 31 0.0 0.0 0.0 0.02533691511048677 0.0010072779707532968 32 7.748292082717666E-5 0.0 0.0 0.04137587972171234 0.0010072779707532968 33 7.748292082717666E-5 0.0 0.0 0.05586518591639438 0.0010072779707532968 34 7.748292082717666E-5 0.0 0.0 0.07360877478581783 0.0011622438124076501 35 7.748292082717666E-5 0.0 0.0 0.09344440251757506 0.0011622438124076501 36 7.748292082717666E-5 0.0 0.0 0.1225779807485935 0.0011622438124076501 37 7.748292082717666E-5 0.0 0.0 0.17177963547385067 0.0011622438124076501 38 7.748292082717666E-5 0.0 0.0 0.23756263525612367 0.0011622438124076501 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCAATCG 45 0.001398401 24.444035 15 ATAACGG 50 0.0025790415 22.002188 35 TAGGACG 325 0.0 21.660337 4 GATATAC 670 0.0 20.359446 1 TTAGGAC 350 0.0 20.11317 3 CGGTCCA 395 0.0 20.050299 10 GTATCAA 3070 0.0 19.206379 1 CCGGTCC 485 0.0 18.597628 9 GACGTGA 225 0.0 18.576748 7 ATACACT 675 0.0 18.576748 4 GCGCTAT 60 0.0074130837 18.333027 11 CGCAATA 440 0.0 18.001791 36 AGGACGT 360 0.0 17.72124 5 CAATACG 460 0.0 17.696726 38 CGTCGTA 250 0.0 17.599707 10 ATACGAA 475 0.0 17.599707 40 TGGCGAG 400 0.0 17.599024 18 CGCCGGT 380 0.0 17.367456 7 AATCCCG 320 0.0 17.186548 19 CGGGATT 205 5.456968E-12 17.170444 44 >>END_MODULE