##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064012_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2269470 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.29992861769488 32.0 32.0 32.0 32.0 32.0 2 31.40694126822562 32.0 32.0 32.0 32.0 32.0 3 31.48388918998709 32.0 32.0 32.0 32.0 32.0 4 31.56839967040763 32.0 32.0 32.0 32.0 32.0 5 31.50865708733757 32.0 32.0 32.0 32.0 32.0 6 35.10566960567886 36.0 36.0 36.0 36.0 36.0 7 35.11869202941656 36.0 36.0 36.0 36.0 36.0 8 35.07083415951742 36.0 36.0 36.0 36.0 36.0 9 35.177487695364995 36.0 36.0 36.0 36.0 36.0 10 35.031149563554486 36.0 36.0 36.0 36.0 36.0 11 35.178949270093895 36.0 36.0 36.0 36.0 36.0 12 35.069072074096596 36.0 36.0 36.0 36.0 36.0 13 35.113857420455 36.0 36.0 36.0 36.0 36.0 14 35.0609666574134 36.0 36.0 36.0 36.0 36.0 15 35.03094599179544 36.0 36.0 36.0 36.0 36.0 16 35.04386795154816 36.0 36.0 36.0 36.0 36.0 17 34.99680013395198 36.0 36.0 36.0 36.0 36.0 18 34.99710416969601 36.0 36.0 36.0 36.0 36.0 19 35.00037145236553 36.0 36.0 36.0 36.0 36.0 20 34.99134643771453 36.0 36.0 36.0 36.0 36.0 21 34.98129739542713 36.0 36.0 36.0 36.0 36.0 22 34.97176389201003 36.0 36.0 36.0 36.0 36.0 23 34.91583982163236 36.0 36.0 36.0 32.0 36.0 24 34.878275985141904 36.0 36.0 36.0 32.0 36.0 25 34.84912556676228 36.0 36.0 36.0 32.0 36.0 26 34.79006992822113 36.0 36.0 36.0 32.0 36.0 27 34.790078300219875 36.0 36.0 36.0 32.0 36.0 28 34.77861394951244 36.0 36.0 36.0 32.0 36.0 29 34.73345715078851 36.0 36.0 36.0 32.0 36.0 30 34.714520130250676 36.0 36.0 36.0 32.0 36.0 31 34.711686869621545 36.0 36.0 36.0 32.0 36.0 32 34.67217544184325 36.0 36.0 36.0 32.0 36.0 33 34.64818041216672 36.0 36.0 36.0 32.0 36.0 34 34.64367847999753 36.0 36.0 36.0 32.0 36.0 35 34.59241893481738 36.0 36.0 36.0 32.0 36.0 36 34.56576205017031 36.0 36.0 36.0 32.0 36.0 37 34.56406605947644 36.0 36.0 36.0 32.0 36.0 38 34.51223677774987 36.0 36.0 36.0 32.0 36.0 39 34.51776405945 36.0 36.0 36.0 32.0 36.0 40 34.489805108681765 36.0 36.0 36.0 32.0 36.0 41 34.47946613085875 36.0 36.0 36.0 32.0 36.0 42 34.393603792956064 36.0 36.0 36.0 32.0 36.0 43 34.39438238883969 36.0 36.0 36.0 32.0 36.0 44 34.30557090421993 36.0 36.0 36.0 32.0 36.0 45 34.2815591305459 36.0 36.0 36.0 32.0 36.0 46 34.2532177116243 36.0 36.0 36.0 32.0 36.0 47 34.22311817296549 36.0 36.0 36.0 32.0 36.0 48 34.1706147250239 36.0 36.0 36.0 32.0 36.0 49 34.143624282321426 36.0 36.0 36.0 32.0 36.0 50 33.53582642643437 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 7.0 19 4.0 20 27.0 21 80.0 22 248.0 23 714.0 24 1873.0 25 4131.0 26 8591.0 27 15862.0 28 26274.0 29 40383.0 30 58034.0 31 82503.0 32 119447.0 33 192434.0 34 397187.0 35 1321670.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.619973269207634 18.178260806339246 11.95156376898003 26.25020215547309 2 16.358502587837997 20.1167501372572 36.25885782621608 27.265889448688718 3 17.830657662476835 24.096503929125053 28.854415716147702 29.218422692250414 4 11.97565951521721 15.690623802033073 35.851674620065474 36.482042062684236 5 14.363662000378943 36.733995161865984 33.06146368976016 15.840879147994908 6 34.79329498657393 35.91703951502247 16.181031132433798 13.108634365969793 7 30.525246213982214 30.45320292984835 20.55401505814796 18.467535798021476 8 28.76980087861924 32.30370967670866 18.864536653932415 20.06195279073969 9 27.441451389528424 13.479586805373486 18.420763898038235 40.65819790705985 10 16.244148915310355 26.194925556885785 30.674643338851553 26.886282188952304 11 38.07734845580686 20.75740150784104 22.030694391201468 19.13455564515063 12 24.839675941388855 23.69182882669315 28.137235807894896 23.331259424023095 13 29.365682263020926 18.773480234522545 25.544380121808608 26.316457380647922 14 23.96962454570771 19.594582685603296 24.50204101056461 31.933751758124384 15 25.52894379568702 27.08368493434994 21.877727891438237 25.509643378524803 16 26.443167777948158 25.343386861674094 23.15175645926858 25.061688901109164 17 24.32131731197152 25.761389223034453 24.513652967432925 25.403640497561103 18 25.449026334829426 24.24561548840124 25.87617527647473 24.429182900294606 19 25.940869868678533 24.386409331874546 25.037090173956994 24.635630625489927 20 26.181836608348704 23.557153589738505 24.50094846560077 25.760061336312024 21 27.8398921334056 23.606789250353607 23.90857777366522 24.64474084257558 22 26.452751722980132 23.533037904461352 24.816554004482988 25.197656368075528 23 24.778910800256977 23.322916694206427 25.55817587199695 26.33999663353964 24 25.190595832844963 24.591643305770265 24.935293034208108 25.282467827176664 25 25.18924363793712 23.934743056513337 25.204005060303714 25.67200824524583 26 25.07016360270546 25.028345258244798 25.437979958040646 24.463511181009096 27 25.750873056966277 24.187632886430986 24.60079539069988 25.46069866590286 28 24.893362756986942 24.024181096477623 25.723679108265884 25.358777038269555 29 24.783986752568165 24.14206090452146 25.545855088148034 25.52809725476234 30 24.505965951904003 24.6243684392816 25.840781042206277 25.028884566608117 31 25.515025298483323 24.284737272099928 24.468141361279617 25.732096068137132 32 25.303493513280568 24.223210831380545 24.263617880626033 26.20967777471285 33 24.724473568366378 23.95778940795802 25.012216977037372 26.305520046638225 34 25.69957455996369 24.06360229398325 25.211959910373377 25.02486323567968 35 26.32265654949965 23.790588743329764 25.350950246980492 24.535804460190093 36 24.70887780579398 24.778281795179353 24.683055115140117 25.82978528388655 37 26.05208018912613 24.464777902383243 24.59463687298541 24.888505035505215 38 24.967291401990323 24.07348406830181 25.162551486572177 25.796673043135687 39 25.950566321080963 24.048816771423436 24.277777581934128 25.722839325561473 40 26.089297666673573 24.405828623247956 24.990030496765474 24.514843213312997 41 24.594792885328467 24.986615375463504 25.59272405200505 24.825867687202976 42 26.530685085429127 24.98280401423268 24.66483800962799 23.821672890710204 43 25.367569785052034 23.67921855370923 25.078246416615958 25.87496524462278 44 24.84697733136221 24.748759052363255 24.514075089174177 25.890188527100356 45 25.041331782289905 24.82233502538071 24.747074168076704 25.38925902425268 46 24.8195268371073 24.706195463131834 24.74303256602588 25.731245133734987 47 25.197495395299242 24.379268711829454 25.174405795313344 25.248830097557967 48 26.323169057807306 25.014860631729974 23.8755822525501 24.78638805791262 49 25.031780757935273 25.328812424128262 24.184837328785985 25.45456948915048 50 25.146974454513487 25.28502601079913 24.228202351062507 25.339797183624874 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 25.0 1 34.0 2 43.0 3 127.5 4 212.0 5 285.0 6 358.0 7 335.5 8 313.0 9 434.0 10 555.0 11 855.0 12 1155.0 13 2275.0 14 3395.0 15 4575.5 16 5756.0 17 6342.5 18 6929.0 19 7158.0 20 7387.0 21 8090.0 22 8793.0 23 9606.0 24 10419.0 25 11761.0 26 13103.0 27 16515.5 28 19928.0 29 22630.5 30 25333.0 31 27423.5 32 29514.0 33 34092.0 34 38670.0 35 45291.5 36 51913.0 37 64885.0 38 77857.0 39 85715.0 40 93573.0 41 103158.5 42 112744.0 43 113387.5 44 114031.0 45 127546.0 46 141061.0 47 152102.0 48 163143.0 49 170752.5 50 178362.0 51 170765.0 52 163168.0 53 162181.5 54 161195.0 55 165720.5 56 170246.0 57 167732.0 58 165218.0 59 151707.5 60 138197.0 61 121322.0 62 104447.0 63 91346.0 64 78245.0 65 67410.0 66 56575.0 67 48762.0 68 40949.0 69 37920.5 70 34892.0 71 26320.0 72 17748.0 73 15399.5 74 13051.0 75 10128.0 76 7205.0 77 6257.0 78 5309.0 79 4421.0 80 3533.0 81 2864.0 82 2195.0 83 1828.5 84 1462.0 85 1019.5 86 577.0 87 417.0 88 257.0 89 192.0 90 127.0 91 118.5 92 110.0 93 87.5 94 65.0 95 56.5 96 48.0 97 41.0 98 34.0 99 39.5 100 45.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.007799177781596584 2 3.525052104676422E-4 3 3.525052104676422E-4 4 0.0 5 0.0 6 1.762526052338211E-4 7 4.4063151308455275E-5 8 0.0 9 0.0013659576905621137 10 8.371998748606502E-4 11 0.0 12 1.762526052338211E-4 13 3.525052104676422E-4 14 2.6437890785073167E-4 15 0.00392162046645252 16 7.931367235521951E-4 17 0.0 18 1.762526052338211E-4 19 4.4063151308455275E-5 20 6.609472696268292E-4 21 0.0 22 4.4063151308455275E-5 23 0.0010575156314029267 24 3.525052104676422E-4 25 0.0018065892036466663 26 0.005772272821407642 27 0.006389156939726015 28 0.004141936222994796 29 0.0021590944141143087 30 0.004053809920377885 31 0.007226356814586665 32 0.0028200416837411376 33 0.003833494163835609 34 0.0024234733219650403 35 0.0026437890785073167 36 0.006521346393651381 37 0.0037453678612186987 38 0.008327935597298048 39 0.003789431012527154 40 0.0021590944141143087 41 0.0033047363481341456 42 0.0019828418088804877 43 0.0016303365984128453 44 0.0015422102957959346 45 0.0013218945392536583 46 8.371998748606502E-4 47 0.0022031575654227636 48 0.0022472207167312194 49 6.609472696268292E-4 50 0.0012337682366367478 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2269470.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.41562053756243 #Duplication Level Percentage of deduplicated Percentage of total 1 70.76255031075138 29.3067493194025 2 15.087224600986787 12.49693538078891 3 5.761130928666349 7.158024372265805 4 2.7418408718647735 4.542201644941232 5 1.4728865598691065 3.050025542920732 6 0.9662196680020292 2.4009952275540956 7 0.6206451940277423 1.7993084091020346 8 0.4188426616448124 1.3877302991699365 9 0.326567254632061 1.2172486948051466 >10 1.598302483053764 11.668286746233026 >50 0.11021120691439217 3.130876164968879 >100 0.10511126771573559 9.232890288353827 >500 0.01787213399426598 5.170661241230587 >1k 0.01059485787684031 7.4380666682632715 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 3318 0.1462015360414546 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 3313 0.14598122028491234 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 3311 0.1458930939822954 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 3306 0.14567277822575314 No Hit GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC 3286 0.14479151519958405 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 3275 0.14430682053519103 No Hit ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCG 2992 0.1318369487148982 No Hit TCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGCGTTATT 2889 0.1272984441301273 No Hit CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA 2876 0.1267256231631174 No Hit GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAAC 2850 0.12557998122909755 No Hit GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATGGTCGGAACTACG 2817 0.12412589723591852 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA 2799 0.12333276051236632 No Hit GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA 2643 0.11645890890824728 No Hit GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCGGCTCGGGCCTGCT 2449 0.10791065755440697 No Hit GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA 2449 0.10791065755440697 No Hit GCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTCAAT 2274 0.1001996060754273 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.525052104676422E-4 2 0.0 0.0 0.0 0.0 3.525052104676422E-4 3 0.0 0.0 0.0 0.0 3.525052104676422E-4 4 0.0 0.0 0.0 0.0 3.525052104676422E-4 5 0.0 0.0 0.0 0.0 3.965683617760975E-4 6 0.0 0.0 0.0 0.0 4.406315130845528E-4 7 0.0 0.0 0.0 0.0 4.8469466439300804E-4 8 0.0 0.0 0.0 0.0 4.8469466439300804E-4 9 0.0 0.0 0.0 0.0 4.8469466439300804E-4 10 0.0 0.0 0.0 4.4063151308455275E-5 4.8469466439300804E-4 11 0.0 0.0 0.0 4.4063151308455275E-5 4.8469466439300804E-4 12 0.0 0.0 0.0 4.4063151308455275E-5 0.0013218945392536583 13 0.0 0.0 0.0 4.4063151308455275E-5 0.0013659576905621137 14 0.0 0.0 0.0 4.4063151308455275E-5 0.0013659576905621137 15 0.0 0.0 0.0 4.4063151308455275E-5 0.0017625260523382112 16 0.0 0.0 0.0 4.4063151308455275E-5 0.001894715506263577 17 0.0 0.0 0.0 4.4063151308455275E-5 0.0019387786575720321 18 0.0 0.0 0.0 4.4063151308455275E-5 0.0021590944141143087 19 0.0 0.0 0.0 4.4063151308455275E-5 0.002203157565422764 20 0.0 0.0 0.0 4.4063151308455275E-5 0.0022912838680396743 21 0.0 0.0 0.0 1.762526052338211E-4 0.002511599624581951 22 0.0 0.0 0.0 4.406315130845528E-4 0.002511599624581951 23 0.0 0.0 0.0 7.490735722437398E-4 0.002511599624581951 24 0.0 0.0 0.0 0.0012337682366367478 0.0025997259271988613 25 0.0 0.0 0.0 0.0014981471444874795 0.0025997259271988613 26 0.0 0.0 0.0 0.001894715506263577 0.002687852229815772 27 0.0 0.0 0.0 0.002555662775890406 0.0027319153811242274 28 0.0 0.0 0.0 0.005816335972716097 0.0027319153811242274 29 0.0 0.0 0.0 0.011897050853282925 0.0028200416837411376 30 0.0 0.0 0.0 0.02498380679189414 0.0028200416837411376 31 0.0 0.0 0.0 0.051157318669116575 0.002864104835049593 32 0.0 0.0 0.0 0.07451078886259788 0.002864104835049593 33 0.0 0.0 0.0 0.09790832220738763 0.0029522311376665037 34 0.0 0.0 0.0 0.12505122341339608 0.0032166100455172353 35 0.0 0.0 0.0 0.15620387138847397 0.0032166100455172353 36 0.0 0.0 0.0 0.20595116921571996 0.0032166100455172353 37 0.0 0.0 0.0 0.2770690954275668 0.0032166100455172353 38 0.0 0.0 0.0 0.37779745931869557 0.0035691152559848777 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCGC 45 0.00139933 24.44223 6 GTATCAA 4795 0.0 22.481695 1 GATATAC 375 0.0 18.773285 1 ACCGTAT 85 1.4325269E-4 18.116005 8 AACGCAG 6020 0.0 17.759188 6 ATACCGT 905 0.0 17.744247 6 ACGATAC 75 0.0012921286 17.598404 3 CGTCGTA 845 0.0 17.44259 10 TACCGTC 900 0.0 17.10956 7 ATAGTAC 260 0.0 16.921543 3 CGTCTTA 290 0.0 16.688877 15 TCTAGAT 765 0.0 16.678228 2 GGTATCA 2445 0.0 16.646175 1 TACGCTC 120 6.407641E-6 16.501049 34 CCGTCGT 870 0.0 16.435656 9 GTCCTAT 925 0.0 16.41077 1 GTCGTAG 880 0.0 16.248886 11 TATACTG 325 0.0 16.24468 5 TAACGGC 285 0.0 16.212986 36 ACCGTCG 900 0.0 16.13187 8 >>END_MODULE