##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064008_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2299907 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.300423017104606 32.0 32.0 32.0 32.0 32.0 2 31.405829018303784 32.0 32.0 32.0 32.0 32.0 3 31.481848613878736 32.0 32.0 32.0 32.0 32.0 4 31.56162227429196 32.0 32.0 32.0 32.0 32.0 5 31.51376468700691 32.0 32.0 32.0 32.0 32.0 6 35.09465252290636 36.0 36.0 36.0 36.0 36.0 7 35.11166451513039 36.0 36.0 36.0 36.0 36.0 8 35.062870803036816 36.0 36.0 36.0 36.0 36.0 9 35.16808288335137 36.0 36.0 36.0 36.0 36.0 10 35.02434315822335 36.0 36.0 36.0 36.0 36.0 11 35.168002880116454 36.0 36.0 36.0 36.0 36.0 12 35.071768988919985 36.0 36.0 36.0 36.0 36.0 13 35.1146115908165 36.0 36.0 36.0 36.0 36.0 14 35.061767280155244 36.0 36.0 36.0 36.0 36.0 15 35.02790982417985 36.0 36.0 36.0 36.0 36.0 16 35.04368307066329 36.0 36.0 36.0 36.0 36.0 17 35.007412038834616 36.0 36.0 36.0 36.0 36.0 18 35.002822288031645 36.0 36.0 36.0 36.0 36.0 19 35.00399755294453 36.0 36.0 36.0 36.0 36.0 20 34.98998002962728 36.0 36.0 36.0 36.0 36.0 21 34.984900693810665 36.0 36.0 36.0 36.0 36.0 22 34.96800348883672 36.0 36.0 36.0 36.0 36.0 23 34.92236729572109 36.0 36.0 36.0 32.0 36.0 24 34.89276740320369 36.0 36.0 36.0 32.0 36.0 25 34.86353622124721 36.0 36.0 36.0 32.0 36.0 26 34.80838225197802 36.0 36.0 36.0 32.0 36.0 27 34.80533865064979 36.0 36.0 36.0 32.0 36.0 28 34.77468436767226 36.0 36.0 36.0 32.0 36.0 29 34.74417791675924 36.0 36.0 36.0 32.0 36.0 30 34.72783073402533 36.0 36.0 36.0 32.0 36.0 31 34.72344620891192 36.0 36.0 36.0 32.0 36.0 32 34.67696737302856 36.0 36.0 36.0 32.0 36.0 33 34.65511214149094 36.0 36.0 36.0 32.0 36.0 34 34.63954890349914 36.0 36.0 36.0 32.0 36.0 35 34.60046558404318 36.0 36.0 36.0 32.0 36.0 36 34.571424844569805 36.0 36.0 36.0 32.0 36.0 37 34.55453503119909 36.0 36.0 36.0 32.0 36.0 38 34.51336684483329 36.0 36.0 36.0 32.0 36.0 39 34.4988423444948 36.0 36.0 36.0 32.0 36.0 40 34.48272256226013 36.0 36.0 36.0 32.0 36.0 41 34.45911943395972 36.0 36.0 36.0 32.0 36.0 42 34.39159757329318 36.0 36.0 36.0 32.0 36.0 43 34.38871267403421 36.0 36.0 36.0 32.0 36.0 44 34.311408243898555 36.0 36.0 36.0 32.0 36.0 45 34.27465501865945 36.0 36.0 36.0 32.0 36.0 46 34.233635099158356 36.0 36.0 36.0 32.0 36.0 47 34.204543488062775 36.0 36.0 36.0 32.0 36.0 48 34.14682550207465 36.0 36.0 36.0 32.0 36.0 49 34.110508816226044 36.0 36.0 36.0 32.0 36.0 50 33.52398770906824 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 6.0 19 7.0 20 19.0 21 96.0 22 281.0 23 798.0 24 1994.0 25 4539.0 26 9184.0 27 16572.0 28 27403.0 29 41307.0 30 59426.0 31 83330.0 32 119956.0 33 190737.0 34 396394.0 35 1347855.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.58158085380055 18.212292591970932 11.848098051305957 26.358028502922565 2 15.643345922297424 20.66865574038501 37.686280000243485 26.00171833707408 3 17.926953345797646 24.822296621592244 29.154658898212965 28.09609113439715 4 11.805303431834417 16.200437669870997 36.71091918064513 35.283339717649454 5 13.693727615942732 37.48851583998831 33.76232169387719 15.055434850191768 6 33.52973326219978 36.527951879626016 16.99496369188386 12.947351166290346 7 29.652211873006983 30.981918391447305 20.981074878712434 18.384794856833278 8 27.880127326887568 33.47744060955508 19.441786124395467 19.200645939161888 9 27.636458503179522 13.640654383390402 18.632621338116202 40.090265775313874 10 15.446186944755572 27.078492517896525 32.06216998392965 25.41315055341825 11 37.1456920413269 20.904941332384887 23.09611784133786 18.853248784950342 12 24.572395567471016 23.89115033397017 29.42011543080456 22.11633866775425 13 29.64259641644198 19.67113252660015 25.513056476975233 25.173214579982634 14 23.23853517364203 20.005574145703473 25.69168104407836 31.064209636576134 15 24.851573404528242 28.11743680944782 22.43904878271494 24.591941003309 16 25.150159877767642 25.86489219881716 24.713963585957888 24.270984337457314 17 23.48690620968587 26.27827994784137 25.665733440526072 24.56908040194669 18 24.140908673895094 25.180257758920927 27.222823938943456 23.45600962824052 19 25.485998123401565 24.748924521263042 25.803141519696894 23.9619358356385 20 25.646540947774525 24.45513769553627 25.449053499445405 24.449267857243793 21 26.57568327762818 24.232849415215483 24.792219859324746 24.399247447831588 22 25.65240738204404 24.752065846197997 25.401614414508426 24.193912357249538 23 24.139739221630307 24.47562572721059 26.050313841915507 25.334321209243598 24 24.62890697184002 24.998967344161365 25.963837479537112 24.40828820446151 25 24.502054914838 24.731591424143815 26.103331866572283 24.663021794445903 26 24.048991028660282 25.59901694431786 26.44505880593173 23.906933221090128 27 24.69998047628303 25.264298513718998 25.46701470192415 24.568706308073818 28 23.99693189911792 25.140773477972374 26.172605024623945 24.68968959828576 29 24.090185521843505 24.952855354531646 25.946534471790827 25.010424651834022 30 23.933743774999467 25.30790734320695 26.288862635386835 24.469486246406753 31 24.920261303761926 24.933871780611288 25.313182290378002 24.83268462524878 32 24.438835297621768 25.36656209303792 25.271467487602262 24.923135121738053 33 24.006981534328702 24.93650482372017 25.963820033298823 25.0926936086523 34 24.635940007661446 25.098366094493198 26.20305788217983 24.062636015665525 35 25.161544759671056 24.93639738989063 25.96630094350575 23.935756906932564 36 23.97189210813537 25.616403807436587 25.712807267003228 24.698896817424806 37 24.942744996410557 25.347476018556403 25.296732453575288 24.41304653145775 38 24.358469833199763 25.372603434278517 25.66033699222115 24.60858974030057 39 25.11520597062172 24.9674970888697 25.107727039900098 24.809569900608487 40 25.404755537873204 25.174392187299578 25.684643965136782 23.736208309690436 41 24.25900118921575 25.454086923627127 26.134961855959233 24.15195003119789 42 25.31423706527713 25.86135827634426 25.466420506327353 23.35798415205126 43 24.371973461027896 25.077145899560104 25.833582261204253 24.717298378207744 44 24.093935948414362 25.651983920795352 25.28944090196599 24.9646392288243 45 24.26230677185513 25.83000271319447 25.348975943009002 24.558714571941394 46 24.219948771262516 25.202086542738517 25.382704583411055 25.19526010258792 47 24.764103667855878 25.159304213979638 25.663599068632887 24.412993049531597 48 25.034034843157094 25.75047318323942 24.71670966224304 24.498782311360443 49 24.417115708124573 25.79330657563658 25.08679728979403 24.702780426444814 50 24.301306512037232 26.23894282444527 24.79942292239889 24.660327741118603 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 35.0 1 45.0 2 55.0 3 151.5 4 248.0 5 289.0 6 330.0 7 339.5 8 349.0 9 497.5 10 646.0 11 1019.5 12 1393.0 13 2603.5 14 3814.0 15 5250.0 16 6686.0 17 7367.5 18 8049.0 19 8367.5 20 8686.0 21 9584.5 22 10483.0 23 11500.0 24 12517.0 25 14290.5 26 16064.0 27 20199.0 28 24334.0 29 29570.0 30 34806.0 31 39286.5 32 43767.0 33 51935.0 34 60103.0 35 69049.5 36 77996.0 37 88482.0 38 98968.0 39 104600.0 40 110232.0 41 116746.0 42 123260.0 43 124452.5 44 125645.0 45 136749.5 46 147854.0 47 155051.0 48 162248.0 49 168134.5 50 174021.0 51 167188.0 52 160355.0 53 156975.0 54 153595.0 55 154323.0 56 155051.0 57 149823.5 58 144596.0 59 131766.5 60 118937.0 61 104722.0 62 90507.0 63 78938.0 64 67369.0 65 57582.5 66 47796.0 67 41507.5 68 35219.0 69 32093.5 70 28968.0 71 22203.5 72 15439.0 73 13343.0 74 11247.0 75 8780.0 76 6313.0 77 5510.5 78 4708.0 79 3896.5 80 3085.0 81 2493.5 82 1902.0 83 1523.5 84 1145.0 85 827.0 86 509.0 87 374.0 88 239.0 89 184.0 90 129.0 91 100.5 92 72.0 93 57.0 94 42.0 95 41.0 96 40.0 97 34.5 98 29.0 99 27.5 100 26.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0092612440416069 2 3.9132017077212253E-4 3 3.0436013282276195E-4 4 0.0 5 0.0 6 3.478401517974422E-4 7 4.348001897468028E-5 8 0.0 9 0.0013913606071897689 10 8.261203605189253E-4 11 4.348001897468028E-5 12 4.348001897468028E-5 13 6.087202656455239E-4 14 1.3044005692404084E-4 15 0.005087162220037592 16 0.0010870004743670071 17 0.0 18 2.608801138480817E-4 19 4.348001897468028E-5 20 6.087202656455239E-4 21 0.0 22 8.696003794936055E-5 23 0.0010000404364176466 24 5.217602276961634E-4 25 0.0023914010436074155 26 0.006043722637480559 27 0.006087202656455239 28 0.004913242144138872 29 0.0030436013282276195 30 0.00469584204926547 31 0.009043843946733498 32 0.004000161745670586 33 0.005478482390809715 34 0.0034784015179744224 35 0.0034784015179744224 36 0.008565563738012014 37 0.00469584204926547 38 0.009130803984682858 39 0.004913242144138872 40 0.0026957611764301774 41 0.0031305613661769803 42 0.0022174809677086944 43 0.0019131208348859324 44 0.001826160796936572 45 0.0015218006641138098 46 0.0011304804933416873 47 0.0026957611764301774 48 0.0025218411005314563 49 3.478401517974422E-4 50 0.001869640815911252 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2299907.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.66985945475261 #Duplication Level Percentage of deduplicated Percentage of total 1 72.13215233735285 34.385295640904154 2 14.992270172700165 14.29358824080593 3 5.533664711513265 7.913670572026844 4 2.534901879829771 4.833536653722935 5 1.3586957432126194 3.2384417560358107 6 0.8076783515100254 2.3101148100677515 7 0.49251983499733665 1.643484591910069 8 0.35918442759518726 1.3697816945438674 9 0.27109099199115305 1.1630582538900958 >10 1.3273457956276107 11.314365263039527 >50 0.10000215567083842 3.300710691731822 >100 0.07639342639806346 7.877783120561957 >500 0.00970531292019212 3.259462903341991 >1k 0.004394858680841664 3.0967058074172438 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 2414 0.1049607658048782 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 2377 0.10335200510281503 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 2339 0.10169976438177718 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 4.3480018974680284E-5 0.0 10 0.0 0.0 0.0 8.696003794936057E-5 0.0 11 0.0 0.0 0.0 8.696003794936057E-5 0.0 12 0.0 0.0 0.0 8.696003794936057E-5 0.0 13 0.0 0.0 0.0 8.696003794936057E-5 0.0 14 0.0 0.0 0.0 8.696003794936057E-5 0.0 15 0.0 0.0 0.0 8.696003794936057E-5 0.0 16 0.0 0.0 0.0 8.696003794936057E-5 0.0 17 0.0 0.0 0.0 1.3044005692404084E-4 0.0 18 0.0 0.0 0.0 1.7392007589872113E-4 0.0 19 0.0 0.0 0.0 2.174000948734014E-4 0.0 20 0.0 0.0 0.0 2.174000948734014E-4 0.0 21 0.0 0.0 0.0 3.0436013282276195E-4 0.0 22 0.0 0.0 0.0 4.348001897468028E-4 0.0 23 0.0 0.0 0.0 0.0011304804933416873 0.0 24 0.0 0.0 0.0 0.0022609609866833746 0.0 25 0.0 0.0 0.0 0.0026522811574554972 0.0 26 0.0 0.0 0.0 0.0033479614610503815 0.0 27 0.0 0.0 0.0 0.003869721688746545 0.0 28 0.0 0.0 0.0 0.006000242618505879 0.0 29 0.0 0.0 0.0 0.010043884383151144 0.0 30 0.0 0.0 0.0 0.019739928614504847 0.0 31 0.0 0.0 0.0 0.04252345855723731 0.0 32 0.0 0.0 0.0 0.0661331088604887 0.0 33 0.0 0.0 0.0 0.08865575868937309 0.0 34 0.0 0.0 0.0 0.11461333001725722 0.0 35 0.0 0.0 0.0 0.14439714301491322 0.0 36 0.0 0.0 0.0 0.1865292814013784 0.0 37 0.0 0.0 0.0 0.2456186271879689 0.0 38 0.0 0.0 0.0 0.3350135461999116 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGGACG 755 0.0 20.396334 4 TGTAGGA 1405 0.0 19.885561 2 GTATCAA 5205 0.0 19.443563 1 ATACCGT 630 0.0 18.856203 6 GTAGGAC 1475 0.0 18.643543 3 GGACGTG 830 0.0 18.553291 6 AATCACG 490 0.0 18.409245 34 AGGACGT 900 0.0 18.332418 5 CGTCGTA 615 0.0 18.242992 10 TACCGTC 680 0.0 18.116743 7 ACCGTCG 640 0.0 17.87411 8 AGTATCG 75 0.0012917831 17.599121 8 GTCCTAA 695 0.0 17.094158 1 CCGTCGT 670 0.0 17.073774 9 CGCAATA 735 0.0 17.062227 36 CTGTAGG 1575 0.0 17.0419 1 TTAGGAC 765 0.0 16.966843 3 TCACGGA 590 0.0 16.780647 36 AACGCAG 6070 0.0 16.780052 6 ATTTCGT 450 0.0 16.622116 42 >>END_MODULE