FastQCFastQC Report
Thu 2 Feb 2017
SRR4064007_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4064007_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1514091
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA23550.021.2058181
ATACCGT2750.020.7985026
CGGATCG550.00448085320.00252326
ACCGTCG2650.019.9230928
CCGTCGT3000.019.7992279
GGTATCA11850.019.4935531
TAATACC2600.019.4601364
CGTCGTA2950.019.38843210
TAGGACG9650.019.148884
TACCGTC2800.018.8557857
GTAGGAC11600.018.7745083
GTCGTAG3050.018.75274711
GATATAC4350.018.7125321
TGTAGGA11300.018.6883012
ACGGTAT3100.018.4508919
TTAGGAC6850.018.305253
TACGACG3200.017.8737135
CATATAG1254.8598304E-717.598152
GTATAAA2400.017.4165611
TAACGGC1408.367351E-817.28732536
Produced by FastQC (version 0.11.5)