FastQCFastQC Report
Thu 2 Feb 2017
SRR4064002_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4064002_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1006915
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGACCG401.8197014E-533.00018728
AACCGTA300.005745799729.332047
GTATAAT2300.022.0034031
TATGACG500.002580801321.9990314
CCGTCGT2900.021.2414999
ATACCGT3050.020.9171126
CGTCTTA1001.122995E-619.80011215
CGTCGTA3250.019.6308810
ACCGTCG3150.019.5546958
TACCGTC3150.019.5546957
CGCAATA2750.019.20106136
GTATCAA18650.018.6409531
TAGGACG3200.018.5616844
TTAACGG600.007408900718.33434735
GTTCGAC600.00741102318.33343711
GGACGTG3600.018.3325276
TACGAAT2950.017.89751841
CGAATGC2950.017.89751843
GTCCTAA2250.017.602721
CGTGCAA1002.4822259E-517.600111
Produced by FastQC (version 0.11.5)