##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064000_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 278585 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.371272681587307 32.0 32.0 32.0 32.0 32.0 2 31.484286662957444 32.0 32.0 32.0 32.0 32.0 3 31.519421361523413 32.0 32.0 32.0 32.0 32.0 4 31.58417000197426 32.0 32.0 32.0 32.0 32.0 5 31.567614911068436 32.0 32.0 32.0 32.0 32.0 6 35.14789023098875 36.0 36.0 36.0 36.0 36.0 7 35.16261464185078 36.0 36.0 36.0 36.0 36.0 8 35.11517490173556 36.0 36.0 36.0 36.0 36.0 9 35.20264910171043 36.0 36.0 36.0 36.0 36.0 10 35.08058940718273 36.0 36.0 36.0 36.0 36.0 11 35.18573146436456 36.0 36.0 36.0 36.0 36.0 12 35.11226735107777 36.0 36.0 36.0 36.0 36.0 13 35.15502629359082 36.0 36.0 36.0 36.0 36.0 14 35.10878187985713 36.0 36.0 36.0 36.0 36.0 15 35.097072706714286 36.0 36.0 36.0 36.0 36.0 16 35.119188039557045 36.0 36.0 36.0 36.0 36.0 17 35.07794389504101 36.0 36.0 36.0 36.0 36.0 18 35.07700342803812 36.0 36.0 36.0 36.0 36.0 19 35.07870488360823 36.0 36.0 36.0 36.0 36.0 20 35.07600552793582 36.0 36.0 36.0 36.0 36.0 21 35.076640881598074 36.0 36.0 36.0 36.0 36.0 22 35.05194464885044 36.0 36.0 36.0 36.0 36.0 23 35.01806629933414 36.0 36.0 36.0 36.0 36.0 24 34.999321571513185 36.0 36.0 36.0 36.0 36.0 25 34.96240644686541 36.0 36.0 36.0 36.0 36.0 26 34.93037313566775 36.0 36.0 36.0 36.0 36.0 27 34.91925983093132 36.0 36.0 36.0 36.0 36.0 28 34.89100633558878 36.0 36.0 36.0 36.0 36.0 29 34.87713624208052 36.0 36.0 36.0 32.0 36.0 30 34.876425507475275 36.0 36.0 36.0 32.0 36.0 31 34.865208105246154 36.0 36.0 36.0 32.0 36.0 32 34.832036900766376 36.0 36.0 36.0 32.0 36.0 33 34.824782382396755 36.0 36.0 36.0 32.0 36.0 34 34.80869393542366 36.0 36.0 36.0 32.0 36.0 35 34.77719546996428 36.0 36.0 36.0 32.0 36.0 36 34.73973114130337 36.0 36.0 36.0 32.0 36.0 37 34.732857117217364 36.0 36.0 36.0 32.0 36.0 38 34.69356569808138 36.0 36.0 36.0 32.0 36.0 39 34.70389647683831 36.0 36.0 36.0 32.0 36.0 40 34.7038139167579 36.0 36.0 36.0 32.0 36.0 41 34.68981459877596 36.0 36.0 36.0 32.0 36.0 42 34.643993754150436 36.0 36.0 36.0 32.0 36.0 43 34.61372651075973 36.0 36.0 36.0 32.0 36.0 44 34.5903512392986 36.0 36.0 36.0 32.0 36.0 45 34.56473248739164 36.0 36.0 36.0 32.0 36.0 46 34.54011881472441 36.0 36.0 36.0 32.0 36.0 47 34.499868980741965 36.0 36.0 36.0 32.0 36.0 48 34.48431537950715 36.0 36.0 36.0 32.0 36.0 49 34.447884846635674 36.0 36.0 36.0 32.0 36.0 50 33.91786348870183 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 1.0 20 0.0 21 6.0 22 22.0 23 71.0 24 200.0 25 438.0 26 879.0 27 1755.0 28 2997.0 29 4448.0 30 6453.0 31 9079.0 32 12912.0 33 20214.0 34 41651.0 35 177458.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.47125974641375 19.036917907554457 13.386869803707585 26.104952542324206 2 14.904301754587484 20.975720070068633 38.171969675214655 25.948008500129227 3 17.31901329581024 24.773497401142922 30.10510294920024 27.802386353846597 4 12.582874167668754 17.303157025683362 36.774054597340125 33.33991420930775 5 13.89809214422887 37.17500942261787 34.224383940269576 14.702514492883681 6 32.36474456537346 37.05094334204405 17.271989776871607 13.312322315710881 7 28.917924511369957 31.789220525153905 21.203941346447223 18.088913617028915 8 27.172317246082883 34.32309707988585 19.87221135380584 18.632374320225427 9 26.86148732325607 15.090763548124245 19.17108489092939 38.87666423769029 10 15.468502650953589 27.924933322325085 32.96802702285528 23.63853700386605 11 35.14797997020658 22.48146885151749 23.268661270348368 19.101889907927564 12 23.325017499147478 24.855250641635408 29.51163917655294 22.308092682664178 13 29.03515289877702 20.764368249318874 25.707239853113794 24.493238998790307 14 22.813944806593344 20.081196335755106 26.63325962725785 30.471599230393704 15 24.7281721032246 28.242819758989434 22.41714140076173 24.611866737024236 16 24.141904358501268 27.41670316100825 24.478968490426517 23.962423990063968 17 22.992264479422797 27.570400416389973 25.717465046574656 23.719870057612578 18 23.49803471112946 26.9835059317623 26.68054633235817 22.837913024750076 19 24.010625123391424 26.24836225927455 27.125293895938402 22.615718721395623 20 24.72584472132183 25.604577450885373 26.440952965543485 23.228624862249312 21 24.815406428917566 25.38758368182063 26.329127555324227 23.467882333937577 22 25.17149164527882 25.521833551698762 25.854586571423443 23.45208823159897 23 24.26548450203708 25.68695371251144 26.062422599924616 23.98513918552686 24 23.929758563008377 25.689743055904547 26.35417937985943 24.026319001227645 25 24.130046163013592 25.888979029212646 26.329430177544527 23.651544630229235 26 24.0654918530059 25.80976346973281 26.49217967541255 23.632565001848736 27 23.978159574391704 26.422104635885212 25.84486261783563 23.754873171887454 28 23.66140658204583 25.887011084946298 26.40177186835908 24.049810464648786 29 23.956392667018456 26.375472490550187 26.03265883400281 23.63547600842855 30 24.026391267046453 26.209988620740404 25.9824034288545 23.781216683358643 31 23.78456578942645 25.68862339937465 26.354899968768287 24.171910842430616 32 24.08417183287684 26.12923721968748 25.737598403291056 24.048992544144625 33 23.400390568909565 26.353349989948594 26.389247867666064 23.857011573475777 34 24.122940844949078 25.417036109027073 26.620670344936514 23.83935270108733 35 23.971454520000144 26.36292820912292 25.99821231777667 23.667404953100267 36 23.96127253537812 25.852054479792653 26.122730307795035 24.0639426770342 37 24.562411154028403 25.815588070588575 25.744870266932786 23.87713050845024 38 23.766940101595736 25.969377681247867 26.172928147044573 24.090754070111828 39 23.939232945163187 25.570768059962955 26.56835575721896 23.921643237654898 40 24.322267532019985 25.66588650852909 26.085879616334502 23.92596634311642 41 24.190253971102933 25.620748451942926 26.540069999102577 23.648927577851566 42 24.169520486477563 25.379970851551114 26.371089907888027 24.079418754083296 43 23.781404915661266 25.337157502898638 26.455332239687845 24.42610534175225 44 23.419400461625166 25.5850183609076 26.45944985479986 24.536131322667377 45 23.074796917234124 26.025823728107806 26.450475804164675 24.44890355049339 46 23.4762850035358 25.61212438841406 26.535381346045465 24.376209262004675 47 23.618604550985904 25.740459549783363 26.603057682436095 24.03787821679464 48 23.47691865891306 25.980687773709526 26.53995261684256 24.002440950534858 49 23.7860888855386 25.45991679319987 26.32429114482937 24.429703176432156 50 23.14443555016315 25.55917309507827 26.731543070058617 24.564848284699963 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2.0 1 3.5 2 5.0 3 26.5 4 48.0 5 51.5 6 55.0 7 59.5 8 64.0 9 83.5 10 103.0 11 161.0 12 219.0 13 353.0 14 487.0 15 611.0 16 735.0 17 712.5 18 690.0 19 632.5 20 575.0 21 658.0 22 741.0 23 1003.0 24 1265.0 25 1643.0 26 2021.0 27 2553.5 28 3086.0 29 3607.0 30 4128.0 31 5162.0 32 6196.0 33 7023.0 34 7850.0 35 8862.5 36 9875.0 37 10949.5 38 12024.0 39 13691.0 40 15358.0 41 16367.0 42 17376.0 43 18322.0 44 19268.0 45 20697.5 46 22127.0 47 22255.0 48 22383.0 49 21882.5 50 21382.0 51 21090.0 52 20798.0 53 20483.5 54 20169.0 55 19114.0 56 18059.0 57 16341.5 58 14624.0 59 12974.0 60 11324.0 61 10022.0 62 8720.0 63 7292.0 64 5864.0 65 4868.5 66 3873.0 67 3203.5 68 2534.0 69 2066.5 70 1599.0 71 1273.0 72 947.0 73 853.0 74 759.0 75 642.0 76 525.0 77 414.0 78 303.0 79 239.5 80 176.0 81 148.0 82 120.0 83 98.0 84 76.0 85 56.5 86 37.0 87 23.0 88 9.0 89 5.0 90 1.0 91 2.0 92 3.0 93 1.5 94 0.0 95 1.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.007538094297970099 2 3.5895687133190947E-4 3 3.5895687133190947E-4 4 0.0 5 0.0 6 3.5895687133190947E-4 7 0.0 8 0.0 9 0.0014358274853276379 10 0.0021537412279914567 11 0.0 12 0.0 13 7.179137426638189E-4 14 3.5895687133190947E-4 15 0.0028716549706552757 16 0.0010768706139957283 17 0.0 18 0.0 19 0.0 20 7.179137426638189E-4 21 0.0 22 0.0 23 0.0 24 0.0010768706139957283 25 0.002512698099323366 26 0.0057433099413105515 27 0.0068201805553062805 28 0.0032306118419871857 29 0.0028716549706552757 30 0.0028716549706552757 31 0.007897051169302009 32 0.004307482455982913 33 0.0061022668126424606 34 0.004307482455982913 35 0.004307482455982913 36 0.008256008040633917 37 0.004666439327314823 38 0.010768706139957285 39 0.004666439327314823 40 0.0032306118419871857 41 0.0035895687133190943 42 0.003948525584651004 43 0.0021537412279914567 44 0.0014358274853276379 45 0.0014358274853276379 46 0.0021537412279914567 47 0.0028716549706552757 48 0.0017947843566595472 49 7.179137426638189E-4 50 0.0014358274853276379 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 278585.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.70588130460977 #Duplication Level Percentage of deduplicated Percentage of total 1 61.66168358404772 28.79963274518938 2 16.295661327381783 15.222064474736266 3 7.917071545353585 11.09321411632164 4 4.4711797539932165 8.35321563526326 5 2.867132963078316 6.695598592903497 6 1.8316300588238406 5.132873767282903 7 1.307406970824858 4.274451635731565 8 0.8579565588532077 3.205729376184749 9 0.6657718969100004 2.798591687372104 >10 2.1121626016236963 13.988666097465602 >50 0.010028475526666778 0.27418759028828726 >100 0.0023142635830769487 0.16177428126076343 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 0.0 0.0 16 0.0 0.0 0.0 0.0 0.0 17 0.0 0.0 0.0 0.0 0.0 18 0.0 0.0 0.0 0.0 0.0 19 0.0 0.0 0.0 0.0 0.0 20 0.0 0.0 0.0 0.0 0.0 21 0.0 0.0 0.0 3.5895687133190947E-4 0.0 22 0.0 0.0 0.0 3.5895687133190947E-4 0.0 23 0.0 0.0 0.0 3.5895687133190947E-4 0.0 24 0.0 0.0 0.0 3.5895687133190947E-4 0.0 25 0.0 0.0 0.0 3.5895687133190947E-4 0.0 26 0.0 0.0 0.0 7.179137426638189E-4 0.0 27 0.0 0.0 0.0 0.0014358274853276379 0.0 28 0.0 0.0 0.0 0.0064612236839743705 0.0 29 0.0 0.0 0.0 0.016870972952599744 0.0 30 0.0 0.0 0.0 0.03697255774718668 0.0 31 0.0 0.0 0.0 0.09548252777428792 0.0 32 0.0 0.0 0.0 0.15399249780138916 0.0 33 0.0 0.0 0.0 0.20783602850117558 0.0 34 0.0 0.0 0.0 0.28214010086688085 0.0 35 0.0 0.0 0.0 0.35572625948992226 0.0 36 0.0 0.0 0.0 0.4551573128488612 0.0 37 0.0 0.0 0.0 0.6303282660588331 0.0 38 0.0 0.0 0.0 0.864368146167238 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGACGGC 25 4.4348788E-5 43.998745 17 GTACTAT 25 0.0023500249 35.198994 1 GGTATCA 135 0.0 34.221245 1 AGGCCGT 35 3.2120955E-4 31.427673 6 GGCGGAC 40 7.0122693E-4 27.50415 21 TAGGACC 40 7.0196344E-4 27.499214 4 GTATCAA 430 0.0 27.115505 1 CCGTGCG 50 8.320442E-5 26.399246 9 CGTGCGG 45 0.0013957495 24.443747 10 GGCCGTG 55 1.5896371E-4 23.999317 7 GTATTTA 60 2.8656522E-4 21.999372 1 TGTATAC 50 0.0025759286 21.999372 3 GCCGTGC 50 0.0025759286 21.999372 8 TATCCTC 70 3.2046206E-5 21.999372 5 TCAACGC 535 0.0 20.971363 4 AGTACCT 85 6.087159E-6 20.705292 5 ATCAACG 555 0.0 20.612022 3 TATCAAC 570 0.0 20.455555 2 CAGTACC 65 4.920017E-4 20.307114 4 TTACACA 65 4.920017E-4 20.307114 4 >>END_MODULE