##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063999_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1288214 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.34709605702158 32.0 32.0 32.0 32.0 32.0 2 31.407057367797588 32.0 32.0 32.0 32.0 32.0 3 31.47956550697322 32.0 32.0 32.0 32.0 32.0 4 31.557151994932518 32.0 32.0 32.0 32.0 32.0 5 31.518081623084363 32.0 32.0 32.0 32.0 32.0 6 35.10201954023167 36.0 36.0 36.0 36.0 36.0 7 35.11823811882187 36.0 36.0 36.0 36.0 36.0 8 35.061396631305044 36.0 36.0 36.0 36.0 36.0 9 35.175222439749916 36.0 36.0 36.0 36.0 36.0 10 35.029603777012206 36.0 36.0 36.0 36.0 36.0 11 35.16563008941061 36.0 36.0 36.0 36.0 36.0 12 35.07174506720157 36.0 36.0 36.0 36.0 36.0 13 35.12434735222564 36.0 36.0 36.0 36.0 36.0 14 35.06212710000047 36.0 36.0 36.0 36.0 36.0 15 35.03109809395023 36.0 36.0 36.0 36.0 36.0 16 35.049599678314316 36.0 36.0 36.0 36.0 36.0 17 35.01266249241198 36.0 36.0 36.0 36.0 36.0 18 35.00893407461804 36.0 36.0 36.0 36.0 36.0 19 35.00496190850278 36.0 36.0 36.0 36.0 36.0 20 34.9957895194432 36.0 36.0 36.0 36.0 36.0 21 34.98832181609577 36.0 36.0 36.0 36.0 36.0 22 34.974983970054666 36.0 36.0 36.0 36.0 36.0 23 34.92949385738705 36.0 36.0 36.0 32.0 36.0 24 34.895452929404584 36.0 36.0 36.0 32.0 36.0 25 34.865685359730605 36.0 36.0 36.0 32.0 36.0 26 34.80557655793214 36.0 36.0 36.0 32.0 36.0 27 34.80030569455075 36.0 36.0 36.0 32.0 36.0 28 34.77886981510836 36.0 36.0 36.0 32.0 36.0 29 34.7482103128828 36.0 36.0 36.0 32.0 36.0 30 34.73209032039708 36.0 36.0 36.0 32.0 36.0 31 34.71967778645473 36.0 36.0 36.0 32.0 36.0 32 34.68697592170245 36.0 36.0 36.0 32.0 36.0 33 34.65534453126577 36.0 36.0 36.0 32.0 36.0 34 34.648875885528334 36.0 36.0 36.0 32.0 36.0 35 34.615079482135734 36.0 36.0 36.0 32.0 36.0 36 34.58641343751892 36.0 36.0 36.0 32.0 36.0 37 34.57370204018898 36.0 36.0 36.0 32.0 36.0 38 34.532600949842184 36.0 36.0 36.0 32.0 36.0 39 34.518109568751775 36.0 36.0 36.0 32.0 36.0 40 34.50726276845307 36.0 36.0 36.0 32.0 36.0 41 34.486174657316255 36.0 36.0 36.0 32.0 36.0 42 34.424980632099945 36.0 36.0 36.0 32.0 36.0 43 34.41930222773546 36.0 36.0 36.0 32.0 36.0 44 34.34452117427694 36.0 36.0 36.0 32.0 36.0 45 34.33205042019416 36.0 36.0 36.0 32.0 36.0 46 34.291701534061886 36.0 36.0 36.0 32.0 36.0 47 34.27070114127001 36.0 36.0 36.0 32.0 36.0 48 34.21931604531545 36.0 36.0 36.0 32.0 36.0 49 34.20094953167719 36.0 36.0 36.0 32.0 36.0 50 33.61054607386661 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 1.0 18 2.0 19 6.0 20 11.0 21 24.0 22 133.0 23 351.0 24 977.0 25 2255.0 26 4686.0 27 8558.0 28 14409.0 29 22240.0 30 32626.0 31 46759.0 32 67658.0 33 108784.0 34 226282.0 35 752451.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.04317616324883 18.33428435014498 12.183961586684212 26.438577899921977 2 15.61895964167333 20.515288656352613 37.642775634407435 26.222976067566623 3 18.013960435083668 24.542699493561617 29.103128988085814 28.3402110832689 4 12.25448566775396 16.38105159546473 36.22232020456229 35.142142532219026 5 14.15168597764036 37.07373153839347 33.540079520949156 15.234502963017013 6 33.87954175315592 35.989206762230495 16.85581743405987 13.275434050553711 7 29.845351781613928 30.650419883652873 21.021352042440153 18.482876292293053 8 27.617016751111812 33.555009924600974 19.482026652424718 19.345946671862496 9 27.482477474365375 14.019961201646641 18.590217815725676 39.90734350826231 10 15.989160101971429 26.84147852358788 31.510770033317705 25.65859134112299 11 37.19431491531292 20.781966957327707 23.032138318740767 18.991579808618607 12 24.977061193438956 23.487319614038086 28.998532847905235 22.537086344617727 13 29.523346718821685 19.553085635815872 25.346624116701378 25.57694352866107 14 23.432030932820787 20.13753958008432 25.1024094655301 31.32802002156479 15 24.89599498198592 27.96797600296237 22.010559255495636 25.12546975955608 16 25.384800496817267 25.69360347772085 24.346064275733582 24.575531749728302 17 23.867385387831526 26.13160546306747 25.334067165859086 24.666941983241912 18 24.689860108103577 24.85854391639866 26.76460108569339 23.68699488980437 19 25.823291645092855 24.62100599823166 25.278661215187242 24.277041141488247 20 25.877581120943955 24.520105573668687 24.898540599285827 24.70377270610154 21 26.76209077063283 24.121535707576534 24.325150945417455 24.79122257637318 22 25.950464675069014 24.607518017220766 24.805777309945878 24.636239997764342 23 24.22359139486123 24.436367757666275 25.67498856938365 25.665052278088847 24 25.12158372062875 24.948552523002903 25.34367535652267 24.586188399845675 25 24.988103490703644 24.563710562004296 25.528860970367017 24.919324976925044 26 24.3111520662915 25.54682023306672 25.8634810643965 24.27854663624528 27 25.133488079619294 25.022474439691646 24.94864648754396 24.895390993145103 28 24.376399278352757 25.003570973882205 25.601320949816948 25.018708797948086 29 24.638306692325667 24.753818768694053 25.28324911871583 25.32462542026445 30 24.375433753514663 24.978302620608705 25.742252211269594 24.904011414607034 31 25.37692674955264 24.60719733874693 24.704859426371094 25.311016485329336 32 24.820850091641844 25.068333531289035 24.68360080641718 25.42721557065194 33 24.37119417213443 24.74366458720838 25.49194352236841 25.39319771828878 34 25.164982490624276 24.823178982228235 25.618262228422246 24.393576298725243 35 25.61744424079685 24.74155257096679 25.423448558539885 24.217554629696476 36 24.386491041616367 25.218399174612983 25.245415228204138 25.14969455556651 37 25.27552716379165 25.06305471262655 24.77248679713112 24.888931326450685 38 24.7101942079211 25.021815008726005 25.29065976039202 24.97733102296088 39 25.541958978411692 24.583996751933583 24.64221973976653 25.231824529888186 40 25.89054420485447 24.86374112793856 25.196305154664785 24.049409512542184 41 24.844234462649652 25.024725304583146 25.714006244594977 24.41703398817222 42 25.83035369115951 25.59614838229883 24.94981314810128 23.623684778440378 43 24.800981217905672 24.773268022310287 25.395456433226336 25.0302943265577 44 24.530875324193428 25.256851242473005 24.91226109050091 25.300012342832655 45 24.75003803768992 25.448844741017673 24.95590733087201 24.845209890420403 46 24.76040099550223 24.90432341712506 24.97061777962015 25.36465780775256 47 25.27325373783167 24.7371485351426 25.24887826235464 24.740719464671088 48 25.635796666167256 25.345699032826758 24.28785572281043 24.730648578195556 49 24.953326672923414 25.432286220636556 24.56084377612639 25.053543330313637 50 24.870321924560816 25.909454350678086 24.375984909058445 24.844238815702653 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 15.0 1 17.5 2 20.0 3 59.5 4 99.0 5 120.5 6 142.0 7 151.5 8 161.0 9 215.5 10 270.0 11 414.0 12 558.0 13 1043.0 14 1528.0 15 2046.0 16 2564.0 17 2734.0 18 2904.0 19 2934.5 20 2965.0 21 3312.0 22 3659.0 23 4290.0 24 4921.0 25 6122.0 26 7323.0 27 9740.5 28 12158.0 29 14614.5 30 17071.0 31 19734.0 32 22397.0 33 26596.5 34 30796.0 35 36601.5 36 42407.0 37 48142.0 38 53877.0 39 56673.5 40 59470.0 41 63367.0 42 67264.0 43 67794.0 44 68324.0 45 74977.5 46 81631.0 47 86940.0 48 92249.0 49 95654.5 50 99060.0 51 96217.0 52 93374.0 53 92399.0 54 91424.0 55 91876.0 56 92328.0 57 89750.0 58 87172.0 59 79023.0 60 70874.0 61 61926.5 62 52979.0 63 45668.0 64 38357.0 65 32712.0 66 27067.0 67 23274.0 68 19481.0 69 17587.5 70 15694.0 71 12312.5 72 8931.0 73 7566.5 74 6202.0 75 4895.0 76 3588.0 77 3161.5 78 2735.0 79 2267.0 80 1799.0 81 1448.0 82 1097.0 83 878.5 84 660.0 85 466.0 86 272.0 87 198.0 88 124.0 89 95.0 90 66.0 91 56.5 92 47.0 93 39.0 94 31.0 95 37.0 96 43.0 97 31.5 98 20.0 99 18.0 100 16.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.00923759561687732 2 3.105074156933553E-4 3 1.5525370784667765E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 7.762685392333882E-5 9 0.0011644028088500823 10 7.762685392333883E-4 11 7.762685392333882E-5 12 3.105074156933553E-4 13 2.3288056177001647E-4 14 2.3288056177001647E-4 15 0.004269476965783636 16 0.0010867759549267435 17 0.0 18 3.8813426961669415E-4 19 7.762685392333882E-5 20 0.0010867759549267435 21 0.0 22 1.5525370784667765E-4 23 5.433879774633717E-4 24 5.433879774633717E-4 25 0.0016301639323901154 26 0.006598282583483801 27 0.006520655729560462 28 0.0038813426961669412 29 0.002872193595163537 30 0.003105074156933553 31 0.007685058538410543 32 0.003648462134396925 33 0.004502357527553652 34 0.003648462134396925 35 0.0031827010108568914 36 0.0070640437070238335 37 0.003648462134396925 38 0.008538953931567271 39 0.004890491797170346 40 0.0031827010108568914 41 0.004657611235400329 42 0.002173551909853487 43 0.0014749102245434375 44 0.00131965651669676 45 0.0013972833706200989 46 0.0015525370784667766 47 0.00263931303339352 48 0.0020959250559301483 49 3.8813426961669415E-4 50 0.0018630444941601318 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1288214.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 59.037641663273156 #Duplication Level Percentage of deduplicated Percentage of total 1 81.16082830057667 47.91543898303885 2 11.65783287551421 13.765019197498665 3 3.217682081574956 5.698930851550714 4 1.337256442030736 3.157938665460568 5 0.6931928021323253 2.0462234127924215 6 0.4123624081841179 1.4606942453867 7 0.2767522153793782 1.1437158684759308 8 0.20053083052542797 0.9471093851999022 9 0.1440959624974672 0.7656377219144924 >10 0.7547283587342393 8.068487624107503 >50 0.06904107215817844 2.8687827286990952 >100 0.06735944597064547 8.335839300543324 >500 0.006881502310031691 2.789808821257968 >1k 0.0014557024117374732 1.0363731940737915 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 1399 0.10859996863875103 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 1371 0.10642641672889754 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 1309 0.10161355178565051 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 1.5525370784667765E-4 0.0 5 0.0 0.0 0.0 1.5525370784667765E-4 7.762685392333882E-5 6 0.0 0.0 0.0 1.5525370784667765E-4 2.3288056177001647E-4 7 0.0 0.0 0.0 1.5525370784667765E-4 2.3288056177001647E-4 8 0.0 0.0 0.0 1.5525370784667765E-4 2.3288056177001647E-4 9 0.0 0.0 0.0 1.5525370784667765E-4 2.3288056177001647E-4 10 0.0 0.0 0.0 1.5525370784667765E-4 2.3288056177001647E-4 11 0.0 0.0 0.0 1.5525370784667765E-4 2.3288056177001647E-4 12 0.0 0.0 0.0 1.5525370784667765E-4 4.6576112354003294E-4 13 0.0 0.0 0.0 1.5525370784667765E-4 6.210148313867106E-4 14 0.0 0.0 0.0 1.5525370784667765E-4 6.986416853100494E-4 15 0.0 0.0 0.0 1.5525370784667765E-4 9.315222470800659E-4 16 7.762685392333882E-5 0.0 0.0 1.5525370784667765E-4 9.315222470800659E-4 17 7.762685392333882E-5 0.0 0.0 1.5525370784667765E-4 9.315222470800659E-4 18 7.762685392333882E-5 0.0 0.0 1.5525370784667765E-4 9.315222470800659E-4 19 7.762685392333882E-5 0.0 0.0 1.5525370784667765E-4 0.0010091491010034046 20 7.762685392333882E-5 0.0 0.0 1.5525370784667765E-4 0.0010867759549267435 21 7.762685392333882E-5 0.0 0.0 1.5525370784667765E-4 0.0010867759549267435 22 7.762685392333882E-5 0.0 0.0 2.3288056177001647E-4 0.0010867759549267435 23 7.762685392333882E-5 0.0 0.0 3.105074156933553E-4 0.0011644028088500823 24 7.762685392333882E-5 0.0 0.0 4.6576112354003294E-4 0.0011644028088500823 25 7.762685392333882E-5 0.0 0.0 4.6576112354003294E-4 0.0011644028088500823 26 7.762685392333882E-5 0.0 0.0 5.433879774633717E-4 0.0011644028088500823 27 7.762685392333882E-5 0.0 0.0 8.53895393156727E-4 0.0011644028088500823 28 7.762685392333882E-5 0.0 0.0 0.0012420296627734212 0.0011644028088500823 29 7.762685392333882E-5 0.0 0.0 0.00263931303339352 0.0011644028088500823 30 7.762685392333882E-5 0.0 0.0 0.004657611235400329 0.0011644028088500823 31 7.762685392333882E-5 0.0 0.0 0.011023013257114113 0.0011644028088500823 32 7.762685392333882E-5 0.0 0.0 0.01831993752590796 0.0011644028088500823 33 7.762685392333882E-5 0.0 0.0 0.024141951570158374 0.0011644028088500823 34 7.762685392333882E-5 0.0 0.0 0.031516502692875564 0.00131965651669676 35 7.762685392333882E-5 0.0 0.0 0.041996127972526304 0.00131965651669676 36 7.762685392333882E-5 0.0 0.0 0.05457167830810719 0.00131965651669676 37 7.762685392333882E-5 0.0 0.0 0.07607431684487205 0.00131965651669676 38 7.762685392333882E-5 0.0 0.0 0.11092877425645117 0.00131965651669676 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCGATT 65 5.931888E-7 27.076826 29 GTATCAA 1930 0.0 25.076658 1 CTAGCCG 70 3.2175798E-5 21.998215 4 GATATAC 385 0.0 21.713366 1 CGATTTT 85 6.1100236E-6 20.707418 31 GTATTAC 135 2.5993359E-9 19.554728 1 ATACACT 470 0.0 19.189932 4 GTCCTAA 445 0.0 18.78572 1 TATACAC 535 0.0 18.50317 3 CGTATGT 120 3.159912E-7 18.334692 33 AACGCAG 2690 0.0 18.236439 6 AATGCCG 185 2.1827873E-11 17.83639 18 CGGATCG 100 2.4816367E-5 17.601305 26 GGATCGA 100 2.4824647E-5 17.600622 27 GCATATA 125 4.8552465E-7 17.599255 1 AACGTAT 115 4.2703105E-6 17.218666 31 GTATATA 155 1.4400939E-8 17.031536 1 TCAACGC 2875 0.0 16.909931 4 GTAGGAC 755 0.0 16.89929 3 GGTATCA 915 0.0 16.82989 1 >>END_MODULE