##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063993_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2045491 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.343642186643695 32.0 32.0 32.0 32.0 32.0 2 31.42737171661963 32.0 32.0 32.0 32.0 32.0 3 31.503137388529208 32.0 32.0 32.0 32.0 32.0 4 31.578848305859083 32.0 32.0 32.0 32.0 32.0 5 31.533632756145103 32.0 32.0 32.0 32.0 32.0 6 35.13041220909796 36.0 36.0 36.0 36.0 36.0 7 35.14300185138923 36.0 36.0 36.0 36.0 36.0 8 35.096302550341214 36.0 36.0 36.0 36.0 36.0 9 35.20287793981983 36.0 36.0 36.0 36.0 36.0 10 35.055570031840766 36.0 36.0 36.0 36.0 36.0 11 35.19694684552511 36.0 36.0 36.0 36.0 36.0 12 35.09502363980091 36.0 36.0 36.0 36.0 36.0 13 35.14018296829465 36.0 36.0 36.0 36.0 36.0 14 35.08062611861895 36.0 36.0 36.0 36.0 36.0 15 35.05689734151849 36.0 36.0 36.0 36.0 36.0 16 35.0647013357673 36.0 36.0 36.0 36.0 36.0 17 35.027386089696805 36.0 36.0 36.0 36.0 36.0 18 35.0314447729176 36.0 36.0 36.0 36.0 36.0 19 35.023323495434596 36.0 36.0 36.0 36.0 36.0 20 35.0131318104064 36.0 36.0 36.0 36.0 36.0 21 35.010685942886084 36.0 36.0 36.0 36.0 36.0 22 34.99509506519462 36.0 36.0 36.0 36.0 36.0 23 34.94285528511247 36.0 36.0 36.0 36.0 36.0 24 34.90535328681476 36.0 36.0 36.0 32.0 36.0 25 34.87525733430262 36.0 36.0 36.0 32.0 36.0 26 34.81602705658446 36.0 36.0 36.0 32.0 36.0 27 34.80544328965515 36.0 36.0 36.0 32.0 36.0 28 34.77734099050057 36.0 36.0 36.0 32.0 36.0 29 34.74252245548868 36.0 36.0 36.0 32.0 36.0 30 34.72571231063837 36.0 36.0 36.0 32.0 36.0 31 34.72163162780966 36.0 36.0 36.0 32.0 36.0 32 34.68440389129065 36.0 36.0 36.0 32.0 36.0 33 34.668812524719 36.0 36.0 36.0 32.0 36.0 34 34.65900901055052 36.0 36.0 36.0 32.0 36.0 35 34.614973617581306 36.0 36.0 36.0 32.0 36.0 36 34.58481411064629 36.0 36.0 36.0 32.0 36.0 37 34.56011637303708 36.0 36.0 36.0 32.0 36.0 38 34.51310076651523 36.0 36.0 36.0 32.0 36.0 39 34.5030948559539 36.0 36.0 36.0 32.0 36.0 40 34.48273299662526 36.0 36.0 36.0 32.0 36.0 41 34.47334747500722 36.0 36.0 36.0 32.0 36.0 42 34.399704031941475 36.0 36.0 36.0 32.0 36.0 43 34.40245104965018 36.0 36.0 36.0 32.0 36.0 44 34.31875183024516 36.0 36.0 36.0 32.0 36.0 45 34.299808701187146 36.0 36.0 36.0 32.0 36.0 46 34.2622035491723 36.0 36.0 36.0 32.0 36.0 47 34.23648796303675 36.0 36.0 36.0 32.0 36.0 48 34.193425441617684 36.0 36.0 36.0 32.0 36.0 49 34.16866659398648 36.0 36.0 36.0 32.0 36.0 50 33.58954353746851 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 1.0 19 5.0 20 16.0 21 55.0 22 241.0 23 659.0 24 1708.0 25 3786.0 26 7728.0 27 14031.0 28 23066.0 29 35781.0 30 51215.0 31 72833.0 32 104936.0 33 170107.0 34 356208.0 35 1203113.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.27246289370661 18.270959426932247 12.036046043731082 26.420531635630063 2 15.773145022471466 20.36580113352201 37.42734601069772 26.433707833308805 3 17.945501353715162 24.419672233732683 28.88175012050949 28.753076292042657 4 12.134641511500172 15.934853783272573 36.15655116546589 35.77395353976136 5 14.235457403625828 37.06420610014906 33.201270501801275 15.499065994423834 6 34.34386742319429 35.913616617273355 16.55425654343271 13.188259416099646 7 30.353396812794582 30.421497821305493 20.828935448750446 18.39616991714948 8 28.085530564544158 33.333659253450634 19.151392012969012 19.429418169036186 9 27.611013605674977 13.75287831158609 18.489784743848602 40.146323338890326 10 16.249950500543395 26.34544411890234 31.057401280972602 26.34720409958166 11 37.50053165719135 20.58464202482436 22.95038208430152 18.964444233682766 12 25.433881792511126 23.235922185806025 28.731041198970615 22.599154822712233 13 29.698027754773193 19.313258560557248 25.336570379851047 25.652143304818516 14 23.619276788010282 20.12925045685964 24.59620843163923 31.65526432349085 15 24.925980393115495 28.403337433582802 21.66662429524925 25.004057878052453 16 25.67232549896723 25.40691037534069 24.315232403231523 24.60553172246055 17 23.867081302239903 26.31881538466803 25.16852921865704 24.645574094435027 18 25.028734016626863 24.27580744908909 26.975167258620814 23.72029127566323 19 26.01852173245615 24.342932179053516 25.057040150301468 24.58150593818886 20 26.301969515194003 23.965889635576623 24.801293389613576 24.930847459615794 21 27.157000446347602 23.837650715647246 23.999421165871667 25.005927672133488 22 26.38239560320295 24.548995374700134 24.51765812478092 24.550950897315996 23 24.134114373266296 24.279997144921627 25.678643329334268 25.90724515247781 24 25.27106080620607 24.623585052325076 25.31642908615182 24.788925055317033 25 24.98473446276309 24.477708404527693 25.38713842432278 25.15041870838644 26 24.35437614220494 25.653495232684687 25.817327389548968 24.174801235561404 27 25.310325102488324 24.782788317920364 24.830457304477708 25.07642927511361 28 24.291026497221598 24.77444752232058 25.588949370838876 25.34557660961894 29 24.67572912363385 24.429522326546678 25.33470875388365 25.56003979593583 30 24.162362345233877 24.831856460148867 25.977975237420097 25.02780595719716 31 25.72871426832291 24.33374451010561 24.49684625948921 25.440694962082265 32 24.88182185741964 24.906853281145423 24.462203283516562 25.74912157791837 33 24.115409624476268 24.67456402383874 25.57443250986355 25.635593841821446 34 25.31997942744949 24.578917829087473 25.617567628348663 24.48353511511437 35 25.80692788799297 24.457880273368655 25.57089100014031 24.164300838498065 36 24.352451682613562 25.09707479966558 25.29298450616771 25.257489011553147 37 25.620731295926003 24.822651693303545 24.53072978033744 25.02588723043302 38 24.726780431352744 24.93867746718994 25.103100570909483 25.231441530547837 39 25.92311565896324 24.193535770334552 24.49914687030962 25.384201700392587 40 26.181512047954214 24.453286830141614 25.21659037542332 24.148610746480852 41 24.947945058141666 24.852317477700343 25.83729133411719 24.362446130040798 42 26.06984754003388 25.556367654140523 25.0645455412121 23.309239264613495 43 24.852026167180732 24.5314141590437 25.479121352965073 25.137438320810496 44 24.471538514939873 25.250774151220305 24.82314543483001 25.454541899009808 45 24.694030602317515 25.39704888763734 24.838692014435832 25.070228495609314 46 24.582089326038524 24.700399369730132 25.138879858106165 25.57863144612518 47 25.42501566889307 24.39341094935403 25.428682336537513 24.75289104521539 48 25.660045838010348 25.333860679043973 24.195537051739848 24.81055643120583 49 24.96951824651941 25.34644578354484 24.476236943200785 25.207799026734968 50 24.832715463021405 25.98751287603271 24.226399154814036 24.953372506131853 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 35.0 1 37.0 2 39.0 3 109.5 4 180.0 5 218.5 6 257.0 7 257.5 8 258.0 9 333.5 10 409.0 11 637.5 12 866.0 13 1648.0 14 2430.0 15 3262.0 16 4094.0 17 4411.0 18 4728.0 19 4717.5 20 4707.0 21 5115.5 22 5524.0 23 6363.0 24 7202.0 25 8766.5 26 10331.0 27 13635.0 28 16939.0 29 20803.0 30 24667.0 31 29464.0 32 34261.0 33 42239.5 34 50218.0 35 58944.0 36 67670.0 37 76874.0 38 86078.0 39 89575.0 40 93072.0 41 98186.5 42 103301.0 43 103993.5 44 104686.0 45 116051.5 46 127417.0 47 136556.5 48 145696.0 49 151773.0 50 157850.0 51 150660.5 52 143471.0 53 142846.0 54 142221.0 55 144450.5 56 146680.0 57 143747.5 58 140815.0 59 128321.0 60 115827.0 61 101941.0 62 88055.0 63 76459.0 64 64863.0 65 55304.0 66 45745.0 67 39457.0 68 33169.0 69 30593.5 70 28018.0 71 21478.0 72 14938.0 73 12868.0 74 10798.0 75 8330.0 76 5862.0 77 5216.0 78 4570.0 79 3850.5 80 3131.0 81 2519.5 82 1908.0 83 1584.5 84 1261.0 85 933.5 86 606.0 87 437.5 88 269.0 89 202.0 90 135.0 91 113.5 92 92.0 93 68.5 94 45.0 95 49.0 96 53.0 97 38.5 98 24.0 99 22.0 100 20.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.010657587835879013 2 3.911041407662023E-4 3 4.3999215836197766E-4 4 0.0 5 0.0 6 2.444400879788764E-4 7 0.0 8 0.0 9 0.0010266483695112812 10 6.844322463408541E-4 11 0.0 12 1.4666405278732588E-4 13 2.444400879788764E-4 14 2.444400879788764E-4 15 0.004253257530832451 16 7.822082815324047E-4 17 0.0 18 2.9332810557465176E-4 19 9.777603519155058E-5 20 6.355442287450788E-4 21 0.0 22 9.777603519155058E-5 23 6.355442287450788E-4 24 4.3999215836197766E-4 25 0.0016621925982563599 26 0.0051332418475564055 27 0.0066487703930254395 28 0.003373273214108495 29 0.0027377289853634163 30 0.003226609161321169 31 0.0069420984986000925 32 0.0030310570909380685 33 0.003959929425257799 34 0.002297736827001439 35 0.002346624844597214 36 0.007870970832919823 37 0.003959929425257799 38 0.007724306780132496 39 0.003959929425257799 40 0.0019555207038310114 41 0.0027377289853634163 42 0.0017599686334479107 43 0.0013688644926817082 44 0.0012222004398943823 45 0.0012222004398943823 46 8.799843167239553E-4 47 0.001808856651043686 48 0.0013199764750859329 49 2.444400879788764E-4 50 0.001173312422298607 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2045491.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.16233721353073 #Duplication Level Percentage of deduplicated Percentage of total 1 76.56073022228746 37.6390443650225 2 13.43142842705753 13.206408271808098 3 4.277300663060501 6.30846292683117 4 1.8308810637441018 3.6004156901462157 5 1.004984043895461 2.4703682230103214 6 0.6032420978296191 1.7794074860938456 7 0.40738889330542516 1.4019733104809884 8 0.29979478601232046 1.1790889891836789 9 0.22081772029789504 0.9770323705207404 >10 1.1782586318913988 10.353339860510905 >50 0.08359394573253265 2.844177381652226 >100 0.08192722101201719 8.741082485938236 >500 0.01313494483408144 4.4749114024347705 >1k 0.006517339039811402 5.024287236366271 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 2836 0.13864641790161872 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 2756 0.1347353764939567 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 2642 0.1291621424880383 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 2574 0.1258377572915256 No Hit ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCG 2471 0.12080229147916074 No Hit CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA 2398 0.11723346619466916 No Hit GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAAC 2397 0.11718457817707338 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 2327 0.11376241694536912 No Hit TCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGCGTTATT 2274 0.11117135201279302 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA 2221 0.10858028708021691 No Hit GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC 2195 0.10730919862272675 No Hit GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA 2157 0.1054514539540873 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.777603519155058E-5 2 0.0 0.0 0.0 0.0 9.777603519155058E-5 3 0.0 0.0 0.0 0.0 1.4666405278732588E-4 4 0.0 0.0 0.0 0.0 1.4666405278732588E-4 5 0.0 0.0 0.0 0.0 1.4666405278732588E-4 6 0.0 0.0 0.0 0.0 1.9555207038310116E-4 7 0.0 0.0 0.0 0.0 2.444400879788765E-4 8 0.0 0.0 0.0 0.0 2.444400879788765E-4 9 0.0 0.0 0.0 0.0 2.444400879788765E-4 10 0.0 0.0 0.0 0.0 2.444400879788765E-4 11 0.0 0.0 0.0 0.0 2.444400879788765E-4 12 0.0 0.0 0.0 0.0 4.88880175957753E-4 13 0.0 0.0 0.0 0.0 6.355442287450788E-4 14 0.0 0.0 0.0 0.0 6.355442287450788E-4 15 0.0 0.0 0.0 0.0 7.822082815324047E-4 16 0.0 0.0 0.0 0.0 7.822082815324047E-4 17 0.0 0.0 0.0 0.0 7.822082815324047E-4 18 0.0 0.0 0.0 0.0 8.310962991281799E-4 19 0.0 0.0 0.0 0.0 8.310962991281799E-4 20 0.0 0.0 0.0 9.777603519155058E-5 9.77760351915506E-4 21 0.0 0.0 0.0 1.9555207038310116E-4 9.77760351915506E-4 22 0.0 0.0 0.0 6.844322463408541E-4 0.001173312422298607 23 0.0 0.0 0.0 8.310962991281799E-4 0.0012222004398943823 24 0.0 0.0 0.0 0.0019066326862352365 0.0012222004398943823 25 0.0 0.0 0.0 0.0022977368270014386 0.0012222004398943823 26 0.0 0.0 0.0 0.0026888409677676413 0.0012222004398943823 27 0.0 0.0 0.0 0.0034221612317042703 0.0013199764750859329 28 0.0 0.0 0.0 0.005671010041109934 0.0013199764750859329 29 0.0 0.0 0.0 0.010266483695112811 0.0013688644926817082 30 0.0 0.0 0.0 0.01847967065120306 0.0013688644926817082 31 0.0 0.0 0.0 0.04008817442853574 0.0014177525102774834 32 0.0 0.0 0.0 0.060816693889144464 0.0014177525102774834 33 0.0 0.0 0.0 0.08218075757849827 0.0014177525102774834 34 0.0 0.0 0.0 0.10452258161976757 0.001515528545469034 35 0.0 0.0 0.0 0.133806504159637 0.001515528545469034 36 0.0 0.0 0.0 0.17462799885210933 0.001515528545469034 37 0.0 0.0 0.0 0.2313380992632087 0.001515528545469034 38 0.0 0.0 0.0 0.30662564636070266 0.0015644165630648093 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTAGGAC 1050 0.0 21.998753 3 GTATCAA 3595 0.0 20.92993 1 TAGGACG 1585 0.0 20.541925 4 GTCCTAA 870 0.0 19.724949 1 GTATAGG 215 0.0 19.44266 1 AGGACGT 1620 0.0 19.011734 5 GTCCTAC 1595 0.0 18.89733 1 GACGTGA 1030 0.0 18.581924 7 TAATACC 180 1.4551915E-11 18.332743 4 ATAATAC 180 1.4551915E-11 18.332294 3 GTAGGAC 1700 0.0 18.116621 3 TCCTACA 1700 0.0 17.987215 2 GGACGTG 1670 0.0 17.91559 6 TGTAGGA 1675 0.0 17.73034 2 TATGGCG 2065 0.0 17.685957 16 TTTAGGA 1310 0.0 17.464659 2 ATACCGT 820 0.0 17.17018 6 CCTACAG 1695 0.0 17.131773 3 TGGCGAG 2120 0.0 17.122509 18 CGGTCCA 850 0.0 17.082638 10 >>END_MODULE