##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063990_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1206467 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.24700717052352 32.0 32.0 32.0 32.0 32.0 2 31.34454319927524 32.0 32.0 32.0 32.0 32.0 3 31.438828413872905 32.0 32.0 32.0 32.0 32.0 4 31.536346207563074 32.0 32.0 32.0 32.0 32.0 5 31.459495369537667 32.0 32.0 32.0 32.0 32.0 6 35.06337595640826 36.0 36.0 36.0 36.0 36.0 7 35.084006441949924 36.0 36.0 36.0 36.0 36.0 8 35.025080669425684 36.0 36.0 36.0 36.0 36.0 9 35.15653308378928 36.0 36.0 36.0 36.0 36.0 10 34.98132812584182 36.0 36.0 36.0 36.0 36.0 11 35.15225779072283 36.0 36.0 36.0 36.0 36.0 12 35.0495935653441 36.0 36.0 36.0 36.0 36.0 13 35.09526244812332 36.0 36.0 36.0 36.0 36.0 14 35.04127423294628 36.0 36.0 36.0 36.0 36.0 15 35.0106608800738 36.0 36.0 36.0 36.0 36.0 16 35.02386389350061 36.0 36.0 36.0 36.0 36.0 17 34.9955721955097 36.0 36.0 36.0 36.0 36.0 18 34.98068989868766 36.0 36.0 36.0 36.0 36.0 19 34.98217108300517 36.0 36.0 36.0 36.0 36.0 20 34.976805830578044 36.0 36.0 36.0 36.0 36.0 21 34.974696365503576 36.0 36.0 36.0 36.0 36.0 22 34.956404941038585 36.0 36.0 36.0 36.0 36.0 23 34.90189039567597 36.0 36.0 36.0 32.0 36.0 24 34.88119442968602 36.0 36.0 36.0 32.0 36.0 25 34.8447715519778 36.0 36.0 36.0 32.0 36.0 26 34.784976298564324 36.0 36.0 36.0 32.0 36.0 27 34.78474338709637 36.0 36.0 36.0 32.0 36.0 28 34.762596904846966 36.0 36.0 36.0 32.0 36.0 29 34.73712252386514 36.0 36.0 36.0 32.0 36.0 30 34.712907190996525 36.0 36.0 36.0 32.0 36.0 31 34.712525083570455 36.0 36.0 36.0 32.0 36.0 32 34.66395185280658 36.0 36.0 36.0 32.0 36.0 33 34.641385135275144 36.0 36.0 36.0 32.0 36.0 34 34.62557699464635 36.0 36.0 36.0 32.0 36.0 35 34.593648230743156 36.0 36.0 36.0 32.0 36.0 36 34.55994900813698 36.0 36.0 36.0 32.0 36.0 37 34.549318796121234 36.0 36.0 36.0 32.0 36.0 38 34.51457022860965 36.0 36.0 36.0 32.0 36.0 39 34.514572715208956 36.0 36.0 36.0 32.0 36.0 40 34.48930472196919 36.0 36.0 36.0 32.0 36.0 41 34.472417397243355 36.0 36.0 36.0 32.0 36.0 42 34.4040135370466 36.0 36.0 36.0 32.0 36.0 43 34.40015101946427 36.0 36.0 36.0 32.0 36.0 44 34.33431996067858 36.0 36.0 36.0 32.0 36.0 45 34.301436342643434 36.0 36.0 36.0 32.0 36.0 46 34.292133974654924 36.0 36.0 36.0 32.0 36.0 47 34.25116642228922 36.0 36.0 36.0 32.0 36.0 48 34.20370138594756 36.0 36.0 36.0 32.0 36.0 49 34.18653887756565 36.0 36.0 36.0 32.0 36.0 50 33.58319788274358 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 2.0 20 11.0 21 32.0 22 106.0 23 354.0 24 929.0 25 2195.0 26 4496.0 27 8301.0 28 13871.0 29 21458.0 30 31051.0 31 43903.0 32 64601.0 33 104335.0 34 216974.0 35 693845.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.50314706791748 18.024538260106223 11.655714997417855 26.816599674558443 2 16.122845145557836 20.566996722648536 36.447563205471866 26.86259492632176 3 18.03584690467349 24.365832714444856 28.88391199405867 28.71440838682298 4 12.47443983134226 16.027790233798356 35.85220316842483 35.645566766434555 5 14.328862704077277 36.92094354839378 33.380109029090725 15.370084718438218 6 34.266529516446006 35.76214106856157 16.61244480767334 13.35888460731908 7 30.180626723007524 30.53388988997618 20.981776527477773 18.303706859538522 8 28.3317322396717 32.79575819313748 19.31051574556121 19.5619938216296 9 27.815869395116906 13.703947455671525 18.099495378167976 40.3806877710436 10 15.631882272881366 26.90096821172182 32.004780964995675 25.462368550401138 11 37.38469431820348 20.8696135078705 22.481924495241064 19.263767678684953 12 24.72005012988348 23.524160647709923 29.01300160965995 22.74278761274665 13 29.90965303449762 19.362846675397442 24.949190192795452 25.778310097309483 14 23.638603090190085 19.217083325390004 25.34234369392182 31.801969890498093 15 25.494753437681585 26.890963180811816 22.180122993114278 25.43416038839233 16 25.874486406824644 25.496766963598187 23.586453158893317 25.042293470683845 17 24.33120839608543 25.626892405677072 25.07014282197524 24.97175637626226 18 25.042044389260177 24.77829821552754 25.863453748685206 24.31620364652708 19 25.739369580767647 24.77821606392881 25.28805180746759 24.194362547835954 20 25.960723139827973 24.07529128583518 24.95687800931816 25.00710756501868 21 26.82460440277272 24.150349740191814 24.439043919145735 24.586001937889723 22 26.024665407342262 24.104264766462737 24.861185593969832 25.009884232225165 23 24.74592876804981 23.93512221362954 25.339072471119888 25.97987654720076 24 25.08775667012858 24.59582199507485 25.09173524879793 25.224686085998638 25 25.110801108384084 24.231686423123882 25.34371759580452 25.313794872687517 26 24.970283241737746 24.84146917663442 25.417651008380375 24.77059657324746 27 25.484071781634494 24.52003139969877 24.713005261190286 25.28289155747645 28 24.924734997563007 24.533821174332974 25.358420562266037 25.183023265837978 29 24.96371528914625 24.60207007280151 25.25332986304231 25.180884775009925 30 24.957311291039183 24.750416111298996 25.422410991969553 24.86986160569227 31 25.377767719998047 24.5432759459632 24.65078919031834 25.42816714372042 32 25.10479360819085 24.668875407300447 24.553409719177168 25.67292126533153 33 24.9038467914669 24.28084031273002 25.09532430156299 25.71998859424009 34 25.381436889984872 24.46443003087635 25.11751662971175 25.036616449427022 35 25.827385299161737 24.3158068369168 25.152082067536952 24.704725796384512 36 25.09798037739853 24.73366247666542 24.86587796054922 25.302479185386833 37 25.708817310186994 24.628919994927102 24.712473609739966 24.94978908514594 38 24.987918310370524 24.52670032684804 25.220765419593143 25.26461594318829 39 25.403677694444998 24.47637946697966 24.687087618782368 25.43285521979297 40 25.598771249696416 24.667261811511494 25.048552380620826 24.685414558171264 41 24.8446427550101 24.847543917381525 25.37290297767017 24.934910349938207 42 25.78661184973973 24.884204767746425 24.900533801929644 24.428649580584196 43 25.260228009303386 24.26208636635661 25.1358954678302 25.341790156509802 44 25.115213866776298 24.68950277342157 24.734179229675114 25.461104130127016 45 25.152410594763957 24.84290622448599 24.82690881059642 25.17777437015363 46 24.999108959720832 24.6024095386898 24.871628034199368 25.526853467389998 47 24.98731805974603 24.58547461954179 25.301382580153174 25.125824740559 48 25.526008666792656 24.962451634721543 24.56467104979593 24.94686864868987 49 24.957458218707444 25.004703840405945 24.663706493620598 25.374131447266013 50 25.061627292062806 25.135895017265586 24.677523900779647 25.12495378989196 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 70.0 1 56.0 2 42.0 3 119.5 4 197.0 5 228.0 6 259.0 7 241.5 8 224.0 9 293.5 10 363.0 11 546.5 12 730.0 13 1367.0 14 2004.0 15 2516.0 16 3028.0 17 3139.5 18 3251.0 19 3317.5 20 3384.0 21 3677.5 22 3971.0 23 4509.5 24 5048.0 25 5738.0 26 6428.0 27 8131.5 28 9835.0 29 11603.0 30 13371.0 31 15335.0 32 17299.0 33 20222.0 34 23145.0 35 27021.0 36 30897.0 37 36184.0 38 41471.0 39 45742.0 40 50013.0 41 55047.5 42 60082.0 43 62669.0 44 65256.0 45 71696.0 46 78136.0 47 83744.5 48 89353.0 49 92367.0 50 95381.0 51 93832.0 52 92283.0 53 91182.5 54 90082.0 55 89503.0 56 88924.0 57 86861.5 58 84799.0 59 77196.0 60 69593.0 61 61400.0 62 53207.0 63 46075.5 64 38944.0 65 33136.0 66 27328.0 67 23446.5 68 19565.0 69 17248.5 70 14932.0 71 11692.5 72 8453.0 73 7105.5 74 5758.0 75 4535.0 76 3312.0 77 2846.5 78 2381.0 79 2004.5 80 1628.0 81 1272.0 82 916.0 83 763.0 84 610.0 85 425.0 86 240.0 87 178.0 88 116.0 89 80.5 90 45.0 91 41.0 92 37.0 93 31.0 94 25.0 95 22.5 96 20.0 97 16.5 98 13.0 99 15.5 100 18.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.008785984200148035 2 4.1443321698811483E-4 3 2.4865993019286894E-4 4 0.0 5 0.0 6 3.315465735904919E-4 7 8.288664339762297E-5 8 0.0 9 0.0015748462245548365 10 0.0013261862943619676 11 0.0 12 8.288664339762297E-5 13 5.802065037833608E-4 14 3.315465735904919E-4 15 0.004807425317062133 16 0.0013261862943619676 17 0.0 18 3.315465735904919E-4 19 0.0 20 4.973198603857379E-4 21 0.0 22 0.0 23 0.0011604130075667217 24 4.973198603857379E-4 25 0.0021550527283381972 26 0.006382271541616969 27 0.007128251332195575 28 0.005221858534050248 29 0.0029839191623144273 30 0.004890311960459756 31 0.008620210913352789 32 0.003978558883085903 33 0.004890311960459756 34 0.0034812390227001652 35 0.003812785596290657 36 0.008537324269955167 37 0.004641652030266887 38 0.007957117766171806 39 0.004890311960459756 40 0.003149692449109673 41 0.00447587874347164 42 0.00223793937173582 43 0.0020721660849405744 44 0.0012432996509643447 45 0.0018235061547477057 46 9.946397207714758E-4 47 0.00223793937173582 48 0.0019063927981453285 49 4.973198603857379E-4 50 0.0017406195113500826 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1206467.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 61.3004047271698 #Duplication Level Percentage of deduplicated Percentage of total 1 79.82627984897476 48.933832626064714 2 12.50794088027734 15.33483676529027 3 3.534843965135258 6.500620971305551 4 1.4459887649816934 3.5455878609727285 5 0.7213758891015354 2.211031698117304 6 0.4363057352788571 1.6047430894427606 7 0.2983637599365539 1.2802873468021618 8 0.20760488277268793 1.0181010669841928 9 0.15535212817584385 0.8570833499165746 >10 0.7548552282405532 8.169769543397855 >50 0.05517032027548708 2.3645213751120377 >100 0.05183695503830488 6.408874357041248 >500 0.0039455870841467984 1.6844721798839015 >1k 1.360547270395448E-4 0.08623776966876043 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.288664339762297E-5 2 0.0 0.0 0.0 0.0 8.288664339762297E-5 3 0.0 0.0 0.0 0.0 8.288664339762297E-5 4 0.0 0.0 0.0 0.0 8.288664339762297E-5 5 0.0 0.0 0.0 0.0 8.288664339762297E-5 6 0.0 0.0 0.0 0.0 8.288664339762297E-5 7 0.0 0.0 0.0 0.0 8.288664339762297E-5 8 0.0 0.0 0.0 0.0 8.288664339762297E-5 9 0.0 0.0 0.0 8.288664339762297E-5 8.288664339762297E-5 10 0.0 0.0 0.0 8.288664339762297E-5 8.288664339762297E-5 11 0.0 0.0 0.0 8.288664339762297E-5 8.288664339762297E-5 12 0.0 0.0 0.0 8.288664339762297E-5 8.288664339762297E-5 13 0.0 0.0 0.0 8.288664339762297E-5 8.288664339762297E-5 14 0.0 0.0 0.0 8.288664339762297E-5 8.288664339762297E-5 15 0.0 8.288664339762297E-5 0.0 8.288664339762297E-5 8.288664339762297E-5 16 0.0 8.288664339762297E-5 0.0 8.288664339762297E-5 8.288664339762297E-5 17 0.0 8.288664339762297E-5 0.0 1.6577328679524594E-4 8.288664339762297E-5 18 0.0 8.288664339762297E-5 0.0 3.315465735904919E-4 8.288664339762297E-5 19 0.0 8.288664339762297E-5 0.0 3.315465735904919E-4 8.288664339762297E-5 20 0.0 8.288664339762297E-5 0.0 4.144332169881149E-4 8.288664339762297E-5 21 0.0 8.288664339762297E-5 0.0 4.973198603857379E-4 8.288664339762297E-5 22 0.0 8.288664339762297E-5 0.0 8.288664339762298E-4 8.288664339762297E-5 23 0.0 8.288664339762297E-5 0.0 0.0013261862943619676 8.288664339762297E-5 24 0.0 8.288664339762297E-5 0.0 0.0019063927981453285 8.288664339762297E-5 25 0.0 8.288664339762297E-5 0.0 0.0019892794415429516 8.288664339762297E-5 26 0.0 8.288664339762297E-5 0.0 0.0024865993019286894 8.288664339762297E-5 27 0.0 8.288664339762297E-5 0.0 0.003149692449109673 2.4865993019286894E-4 28 0.0 8.288664339762297E-5 0.0 0.00530474517744787 2.4865993019286894E-4 29 0.0 8.288664339762297E-5 0.0 0.009366190703931396 2.4865993019286894E-4 30 0.0 8.288664339762297E-5 0.0 0.01674310196631984 2.4865993019286894E-4 31 0.0 8.288664339762297E-5 0.0 0.04061445526483526 4.144332169881149E-4 32 0.0 8.288664339762297E-5 0.0 0.0631596222689887 4.144332169881149E-4 33 0.0 8.288664339762297E-5 0.0 0.08520746941275642 4.144332169881149E-4 34 0.0 8.288664339762297E-5 0.0 0.11032212236223618 4.144332169881149E-4 35 0.0 8.288664339762297E-5 0.0 0.14090729377595906 4.144332169881149E-4 36 0.0 8.288664339762297E-5 0.0 0.18525164799368735 4.144332169881149E-4 37 0.0 8.288664339762297E-5 0.0 0.25222405585896673 4.144332169881149E-4 38 0.0 8.288664339762297E-5 0.0 0.3477094690530284 4.144332169881149E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATACCG 40 7.0356095E-4 27.49767 5 TAACGGC 45 0.0013975523 24.446424 36 TAGCGAG 45 0.0013989029 24.442371 5 ACGTACT 55 0.004485807 19.998304 19 GTATCAA 2120 0.0 19.92449 1 CGAACGT 160 5.2750693E-11 19.24837 4 GTATAAA 125 4.8525544E-7 17.599966 1 TATAATA 175 1.9099389E-10 17.599236 2 GTATAGA 115 4.272948E-6 17.21736 1 AACCGTG 130 7.3200863E-7 16.922344 7 CTACACC 210 9.094947E-12 16.760485 4 GATTAAT 335 0.0 16.41788 38 GATATAT 215 1.2732926E-11 16.372063 1 TAGTACT 125 9.447751E-6 15.838657 4 TAGCACT 210 1.5097612E-10 15.712954 4 CGCGCAA 170 4.4896296E-8 15.529384 21 GTACATG 4165 0.0 15.476562 1 AACGCAG 2760 0.0 15.462457 6 ATAATAC 185 7.574272E-9 15.45815 3 TACATGG 4220 0.0 15.430611 2 >>END_MODULE