##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063979_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2539119 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.32726981287604 32.0 32.0 32.0 32.0 32.0 2 31.368016229251168 32.0 32.0 32.0 32.0 32.0 3 31.45088079763099 32.0 32.0 32.0 32.0 32.0 4 31.535394363162972 32.0 32.0 32.0 32.0 32.0 5 31.479879438498156 32.0 32.0 32.0 32.0 32.0 6 35.05544600312155 36.0 36.0 36.0 36.0 36.0 7 35.07246883663192 36.0 36.0 36.0 36.0 36.0 8 35.013926877787135 36.0 36.0 36.0 36.0 36.0 9 35.1350818925777 36.0 36.0 36.0 36.0 36.0 10 34.97858981796442 36.0 36.0 36.0 36.0 36.0 11 35.12980998527442 36.0 36.0 36.0 36.0 36.0 12 35.03341631487142 36.0 36.0 36.0 36.0 36.0 13 35.075738080806765 36.0 36.0 36.0 36.0 36.0 14 35.018034995602804 36.0 36.0 36.0 36.0 36.0 15 34.990552628687354 36.0 36.0 36.0 36.0 36.0 16 35.005663381668995 36.0 36.0 36.0 36.0 36.0 17 34.971304613923174 36.0 36.0 36.0 36.0 36.0 18 34.968193298541735 36.0 36.0 36.0 36.0 36.0 19 34.96315099843686 36.0 36.0 36.0 36.0 36.0 20 34.95395016933038 36.0 36.0 36.0 36.0 36.0 21 34.955874458818194 36.0 36.0 36.0 36.0 36.0 22 34.938174224996935 36.0 36.0 36.0 36.0 36.0 23 34.879857541139266 36.0 36.0 36.0 32.0 36.0 24 34.85376148183681 36.0 36.0 36.0 32.0 36.0 25 34.82746417162803 36.0 36.0 36.0 32.0 36.0 26 34.759102665137 36.0 36.0 36.0 32.0 36.0 27 34.75778961127856 36.0 36.0 36.0 32.0 36.0 28 34.740003520906264 36.0 36.0 36.0 32.0 36.0 29 34.705322988012774 36.0 36.0 36.0 32.0 36.0 30 34.69328377283617 36.0 36.0 36.0 32.0 36.0 31 34.68367768505533 36.0 36.0 36.0 32.0 36.0 32 34.64848555739215 36.0 36.0 36.0 32.0 36.0 33 34.62586353770737 36.0 36.0 36.0 32.0 36.0 34 34.62608251129624 36.0 36.0 36.0 32.0 36.0 35 34.58294077591479 36.0 36.0 36.0 32.0 36.0 36 34.55886234556159 36.0 36.0 36.0 32.0 36.0 37 34.55421860889545 36.0 36.0 36.0 32.0 36.0 38 34.51872401411671 36.0 36.0 36.0 32.0 36.0 39 34.509097840628975 36.0 36.0 36.0 32.0 36.0 40 34.49182767723766 36.0 36.0 36.0 32.0 36.0 41 34.48229090483746 36.0 36.0 36.0 32.0 36.0 42 34.4213008527761 36.0 36.0 36.0 32.0 36.0 43 34.42006184034699 36.0 36.0 36.0 32.0 36.0 44 34.35920844985997 36.0 36.0 36.0 32.0 36.0 45 34.33706809330323 36.0 36.0 36.0 32.0 36.0 46 34.31694772872008 36.0 36.0 36.0 32.0 36.0 47 34.30371006636554 36.0 36.0 36.0 32.0 36.0 48 34.255178272463795 36.0 36.0 36.0 32.0 36.0 49 34.24228797468729 36.0 36.0 36.0 32.0 36.0 50 33.62464421714776 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 6.0 19 6.0 20 23.0 21 69.0 22 236.0 23 808.0 24 2035.0 25 4740.0 26 9834.0 27 17628.0 28 29622.0 29 45375.0 30 65703.0 31 93431.0 32 135088.0 33 216947.0 34 451791.0 35 1465776.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.34387994118688 18.02879133353211 11.904340835696244 26.722987889584775 2 16.062365331378835 20.16054488533943 36.78133577093958 26.995754012342154 3 18.216275440960903 23.526986184944825 28.823321835884485 29.433416538209784 4 12.302495471854607 16.000943634386573 35.7799299678353 35.91663092592352 5 14.38089353039381 36.64223693336153 33.49378268604189 15.483086850202769 6 34.76085002745048 35.77754165028959 16.29884865532047 13.162759666939463 7 30.514714569952694 30.28955746803218 20.417302714803103 18.77842524721202 8 28.209705807408003 33.374528724333125 18.86000616749353 19.555759300765345 9 27.318874855410623 13.878098702407598 18.13124166284968 40.6717847793321 10 15.757713482727887 26.795946426538926 31.51637218487074 25.92996790586245 11 37.687205680395444 20.757672247736323 22.333139959174815 19.22198211269342 12 24.591816761496222 23.445315832236165 28.85881194131661 23.104055464951003 13 29.7042812773965 19.394140133007653 25.04995860741317 25.851619982182676 14 23.632634349907605 19.365676873368525 24.865819442672173 32.13586933405169 15 25.32817754237655 27.48676458888501 21.651407510450873 25.533650358287563 16 25.99814028373079 25.71764686421984 23.493037091532933 24.791175760516435 17 24.464272844242434 25.756689623448132 24.89410697174886 24.884930560560573 18 25.061881797397913 24.939004338125688 25.856174296949924 24.14293956752648 19 25.846809797732913 24.73122556730329 24.883680081036015 24.53828455392778 20 26.082329764885753 24.238688735326527 24.563881933247373 25.11509956654035 21 26.86258501472361 24.16798897570378 24.1382936364936 24.831132373079008 22 26.212597696441474 24.222928067456575 24.615545180111965 24.94892905598998 23 24.881779116483262 24.131159704824892 25.11379018495902 25.873270993732827 24 25.03086717563866 24.729107303557747 25.014995441307075 25.225030079496513 25 25.24087540644771 24.30978719784236 25.009688579134426 25.439648816575506 26 24.805779911075263 25.144535193172434 25.31030905462424 24.739375841128066 27 25.41171336486589 24.646597843292714 24.816627890993292 25.1250609008481 28 24.999094140110532 24.518318850077826 25.3043689228617 25.178218086949943 29 24.897422425832612 24.522440247430737 25.061026665836962 25.519110660899692 30 24.84312820399714 24.798898470903687 25.301455366961058 25.056517958138112 31 25.46274433038498 24.498479476976314 24.4717753036812 25.56700088895751 32 25.23289176484952 24.708365907788526 24.436217411596047 25.622524915765904 33 24.88826309570697 24.43410791650256 24.971287908625442 25.706341079165025 34 25.464869299386738 24.526288800483016 25.06968165614894 24.939160243981302 35 25.71931459377113 24.337222322215915 25.257015520377905 24.686447563635046 36 24.81088490033203 24.842669943637674 24.88418349462175 25.462261661408547 37 25.726797882957715 24.568119750422802 24.590963263692124 25.114119102927358 38 25.132792160477052 24.39358312359931 24.96035731587716 25.513267400046473 39 25.753278553257758 24.339060914115436 24.411057734912276 25.496602797714534 40 25.931448538354413 24.437822560825754 24.87987661556106 24.750852285258773 41 24.90571180107002 24.77751293410381 25.446037532532184 24.870737732293986 42 25.94547077897143 24.86901746656957 24.876500494864477 24.309011259594524 43 25.267989712849882 24.0151786663726 25.1558235430804 25.561008077697128 44 24.824326825752532 24.710270214919518 24.81196019046194 25.653442768866014 45 25.029488969451595 24.876284173235636 24.79523135302678 25.298995504285994 46 24.907171393823294 24.579179610946923 24.89070878992772 25.622940205302065 47 25.285950704863268 24.368214553809775 25.177958578599913 25.167876162727044 48 25.552590795503104 24.927404950996127 24.361334890324667 25.158669363176106 49 25.064254899165295 24.867807803218927 24.727443438753642 25.340493858862136 50 24.96357937097763 25.055738626897977 24.575328967190124 25.405353034934265 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 5.0 1 14.0 2 23.0 3 86.0 4 149.0 5 204.0 6 259.0 7 248.0 8 237.0 9 336.0 10 435.0 11 652.5 12 870.0 13 1621.5 14 2373.0 15 3039.5 16 3706.0 17 3853.5 18 4001.0 19 4047.0 20 4093.0 21 4994.0 22 5895.0 23 6954.0 24 8013.0 25 10809.0 26 13605.0 27 17898.5 28 22192.0 29 26264.0 30 30336.0 31 34641.0 32 38946.0 33 45811.5 34 52677.0 35 62151.5 36 71626.0 37 82944.5 38 94263.0 39 101224.5 40 108186.0 41 118634.0 42 129082.0 43 132886.5 44 136691.0 45 149224.5 46 161758.0 47 171703.5 48 181649.0 49 189191.0 50 196733.0 51 193279.0 52 189825.0 53 189498.0 54 189171.0 55 187880.0 56 186589.0 57 181481.5 58 176374.0 59 161365.0 60 146356.0 61 129082.5 62 111809.0 63 97877.5 64 83946.0 65 71305.0 66 58664.0 67 51133.0 68 43602.0 69 38158.0 70 32714.0 71 25435.0 72 18156.0 73 15419.0 74 12682.0 75 10089.0 76 7496.0 77 6441.5 78 5387.0 79 4498.0 80 3609.0 81 2917.5 82 2226.0 83 1802.0 84 1378.0 85 1014.5 86 651.0 87 467.5 88 284.0 89 216.0 90 148.0 91 115.0 92 82.0 93 63.5 94 45.0 95 56.0 96 67.0 97 46.0 98 25.0 99 27.5 100 30.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0090582599712735 2 6.301398240885914E-4 3 1.9691869502768482E-4 4 0.0 5 0.0 6 3.938373900553696E-5 7 1.1815121701661089E-4 8 0.0 9 0.0012602796481771827 10 0.001023977214143961 11 0.0 12 7.876747801107392E-5 13 6.695235630941283E-4 14 1.1815121701661089E-4 15 0.0038202226835370853 16 8.664422581218131E-4 17 0.0 18 1.5753495602214784E-4 19 3.938373900553696E-5 20 5.119886070719805E-4 21 0.0 22 1.5753495602214784E-4 23 6.301398240885914E-4 24 5.513723460775174E-4 25 0.001851035733260237 26 0.004647281202653361 27 0.006143863284863766 28 0.0037414552055260114 29 0.0025599430353599024 30 0.004056525117570307 31 0.007482910411052023 32 0.0025205592963543654 33 0.0046866649416588985 34 0.002835629208398661 35 0.002756861730387587 36 0.007443526672046485 37 0.004135292595581381 38 0.007443526672046485 39 0.004647281202653361 40 0.0024811755573488285 41 0.0037414552055260114 42 0.0015753495602214786 43 0.0011421284311605717 44 0.0011421284311605717 45 0.0013390471261882566 46 0.0012208959091716458 47 0.0017722682552491632 48 0.0013390471261882566 49 5.119886070719805E-4 50 0.0014178146041993304 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2539119.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.865394236148894 #Duplication Level Percentage of deduplicated Percentage of total 1 70.5388190681512 33.05829564581283 2 15.226730616422445 14.272134665325527 3 5.893604869015603 8.286183469755088 4 2.8770055375813652 5.393279949533366 5 1.5302300688347532 3.585741772397498 6 0.9043741391049943 2.5430310339679987 7 0.5979104945948278 1.961491773298216 8 0.4136677831774903 1.5509362993125477 9 0.2993412427874211 1.2625870818934124 >10 1.5370057023837886 12.844034617668154 >50 0.10277845945866275 3.328824517703868 >100 0.06541235752776471 6.311983031337595 >500 0.009141441184780098 2.8308462829386136 >1k 0.003978219774855882 2.770629859055313 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 7.876747801107392E-5 2 0.0 0.0 0.0 0.0 7.876747801107392E-5 3 0.0 0.0 0.0 0.0 7.876747801107392E-5 4 0.0 0.0 0.0 0.0 7.876747801107392E-5 5 0.0 0.0 0.0 0.0 1.1815121701661087E-4 6 0.0 0.0 0.0 0.0 1.5753495602214784E-4 7 0.0 0.0 0.0 0.0 1.5753495602214784E-4 8 0.0 0.0 0.0 0.0 1.5753495602214784E-4 9 0.0 0.0 0.0 0.0 1.5753495602214784E-4 10 0.0 0.0 0.0 0.0 1.5753495602214784E-4 11 0.0 0.0 0.0 0.0 1.5753495602214784E-4 12 0.0 0.0 0.0 0.0 2.756861730387587E-4 13 0.0 0.0 0.0 0.0 3.5445365104983266E-4 14 0.0 0.0 0.0 0.0 3.5445365104983266E-4 15 0.0 0.0 0.0 0.0 3.938373900553696E-4 16 0.0 0.0 0.0 0.0 3.938373900553696E-4 17 0.0 0.0 0.0 0.0 3.938373900553696E-4 18 0.0 0.0 0.0 3.938373900553696E-5 4.3322112906090657E-4 19 0.0 0.0 0.0 3.938373900553696E-5 4.3322112906090657E-4 20 0.0 0.0 0.0 7.876747801107392E-5 5.119886070719805E-4 21 0.0 0.0 0.0 1.1815121701661087E-4 5.907560850830544E-4 22 0.0 0.0 0.0 1.969186950276848E-4 5.907560850830544E-4 23 0.0 0.0 0.0 3.938373900553696E-4 5.907560850830544E-4 24 0.0 0.0 0.0 7.089073020996653E-4 5.907560850830544E-4 25 0.0 0.0 0.0 8.270585191162762E-4 5.907560850830544E-4 26 0.0 0.0 0.0 0.001142128431160572 5.907560850830544E-4 27 0.0 0.0 0.0 0.0014571983432048676 6.301398240885914E-4 28 0.0 0.0 0.0 0.0031506991204429567 7.089073020996653E-4 29 0.0 0.0 0.0 0.0072466079770188005 7.089073020996653E-4 30 0.0 0.0 0.0 0.016147332992270152 7.089073020996653E-4 31 0.0 0.0 0.0 0.03816284309636531 7.089073020996653E-4 32 0.0 0.0 0.0 0.058484852423222385 7.089073020996653E-4 33 0.0 0.0 0.0 0.07908254792311821 7.876747801107392E-4 34 0.0 0.0 0.0 0.10137374420025214 8.270585191162762E-4 35 0.0 0.0 0.0 0.12862729159208372 8.270585191162762E-4 36 0.0 0.0 0.0 0.16990145006988644 8.270585191162762E-4 37 0.0 0.0 0.0 0.23393940969288954 8.270585191162762E-4 38 0.0 0.0 0.0 0.3194808908129158 8.664422581218131E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 2750 0.0 27.920149 1 GGTATCA 1225 0.0 24.245028 1 CGTACAC 140 1.8553692E-10 20.427073 3 TAGGACG 640 0.0 18.561138 4 GATATAC 585 0.0 18.051378 1 TATACCG 115 4.2796164E-6 17.216127 5 TAGTACG 115 4.2796164E-6 17.216127 4 TCAACGC 4375 0.0 17.196453 4 CTAGACG 90 2.2178242E-4 17.109856 4 CAACGCA 4495 0.0 16.73737 5 CGCAATA 750 0.0 16.721407 36 TATCAAC 4570 0.0 16.703697 2 ATCAACG 4540 0.0 16.619925 3 GTGTACG 160 2.1320375E-8 16.50009 1 AACGCAG 4590 0.0 16.343027 6 CGTCTTA 230 1.8189894E-12 16.260637 15 CGAATGC 805 0.0 16.123993 43 GTCCTAC 875 0.0 16.091515 1 TAAACGC 535 0.0 16.038101 28 TACGAAT 805 0.0 15.850705 41 >>END_MODULE