##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063978_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1569464 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.355716346472427 32.0 32.0 32.0 32.0 32.0 2 31.409553197779623 32.0 32.0 32.0 32.0 32.0 3 31.48273933011525 32.0 32.0 32.0 32.0 32.0 4 31.564630982297142 32.0 32.0 32.0 32.0 32.0 5 31.522091618539832 32.0 32.0 32.0 32.0 32.0 6 35.1118114209692 36.0 36.0 36.0 36.0 36.0 7 35.13570301708099 36.0 36.0 36.0 36.0 36.0 8 35.07097900939429 36.0 36.0 36.0 36.0 36.0 9 35.18371813561828 36.0 36.0 36.0 36.0 36.0 10 35.039182803810725 36.0 36.0 36.0 36.0 36.0 11 35.17104310771066 36.0 36.0 36.0 36.0 36.0 12 35.090270308844296 36.0 36.0 36.0 36.0 36.0 13 35.12533769490731 36.0 36.0 36.0 36.0 36.0 14 35.07812603538533 36.0 36.0 36.0 36.0 36.0 15 35.0487427554885 36.0 36.0 36.0 36.0 36.0 16 35.07075090604181 36.0 36.0 36.0 36.0 36.0 17 35.02782223740079 36.0 36.0 36.0 36.0 36.0 18 35.0275896739269 36.0 36.0 36.0 36.0 36.0 19 35.024559340003975 36.0 36.0 36.0 36.0 36.0 20 35.012101583725396 36.0 36.0 36.0 36.0 36.0 21 35.00718525560319 36.0 36.0 36.0 36.0 36.0 22 34.99454718298731 36.0 36.0 36.0 36.0 36.0 23 34.94498822527946 36.0 36.0 36.0 36.0 36.0 24 34.92335408776499 36.0 36.0 36.0 36.0 36.0 25 34.888705315955 36.0 36.0 36.0 32.0 36.0 26 34.82792787856236 36.0 36.0 36.0 32.0 36.0 27 34.819646070250734 36.0 36.0 36.0 32.0 36.0 28 34.79816548834506 36.0 36.0 36.0 32.0 36.0 29 34.76672800395549 36.0 36.0 36.0 32.0 36.0 30 34.747798611500485 36.0 36.0 36.0 32.0 36.0 31 34.73856106288516 36.0 36.0 36.0 32.0 36.0 32 34.705326149564435 36.0 36.0 36.0 32.0 36.0 33 34.69474546724232 36.0 36.0 36.0 32.0 36.0 34 34.68605969936233 36.0 36.0 36.0 32.0 36.0 35 34.664293669685954 36.0 36.0 36.0 32.0 36.0 36 34.62180209294383 36.0 36.0 36.0 32.0 36.0 37 34.60426425837101 36.0 36.0 36.0 32.0 36.0 38 34.575513678555225 36.0 36.0 36.0 32.0 36.0 39 34.55520419710169 36.0 36.0 36.0 32.0 36.0 40 34.5482527792928 36.0 36.0 36.0 32.0 36.0 41 34.542683361963064 36.0 36.0 36.0 32.0 36.0 42 34.48160773359567 36.0 36.0 36.0 32.0 36.0 43 34.48030792678264 36.0 36.0 36.0 32.0 36.0 44 34.42419195343123 36.0 36.0 36.0 32.0 36.0 45 34.39457164993909 36.0 36.0 36.0 32.0 36.0 46 34.36249573102664 36.0 36.0 36.0 32.0 36.0 47 34.34422325074038 36.0 36.0 36.0 32.0 36.0 48 34.29769398979524 36.0 36.0 36.0 32.0 36.0 49 34.291617392944346 36.0 36.0 36.0 32.0 36.0 50 33.71071079043546 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 2.0 20 11.0 21 44.0 22 131.0 23 435.0 24 1126.0 25 2663.0 26 5610.0 27 10314.0 28 16962.0 29 26756.0 30 38689.0 31 54915.0 32 79458.0 33 128556.0 34 269446.0 35 934345.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.37085453392679 18.024641010364263 11.782060554311222 26.822443901397726 2 15.841707806291621 20.144419835713357 37.46046390714721 26.553408450847808 3 18.129623010221994 23.953922976006382 29.073075499264394 28.84337851450723 4 12.161604216471355 15.893132942201923 36.1487106426143 35.796552198712426 5 14.106663166533288 37.04901800869596 33.84919947192163 14.995119352849127 6 34.574608735100774 35.99522383799279 16.39460935951897 13.035558067387464 7 30.069902890351667 30.433275585343523 20.9715679821697 18.52525354213511 8 27.686458561649076 34.2357008507363 19.103719486397903 18.97412110121672 9 27.28311309652381 13.738469664792758 18.31097195381558 40.66744528486785 10 15.385399589282608 27.175078642249606 32.29400891650509 25.145512851962692 11 37.528098764928664 20.59174342323239 22.90329692175163 18.976860890087316 12 24.47005691762968 23.230969103405563 29.682801930089376 22.616172048875377 13 29.84174801635468 19.61344641688633 25.176892164752314 25.367913402006682 14 23.21504006789592 19.598894142638777 25.133278240109185 32.05278754935612 15 24.84685093405956 28.383393250608833 21.830384621756536 24.939371193575067 16 25.449773679542464 25.586381523279407 24.39373897707231 24.57010582010582 17 23.95123430674421 26.170654439987157 25.42766192789385 24.45044932537478 18 24.585701715429693 25.034773084517553 26.622197047266543 23.75732815278621 19 25.600204910721114 24.764059577027574 25.2063761895781 24.429359322673218 20 25.920779071004723 24.600961222943702 25.024610391223984 24.453649314827594 21 26.330581650805623 24.418655031271822 24.44790068456492 24.80286263335763 22 25.873230283027283 24.706459546595642 25.00535215934143 24.414958011035644 23 24.49850425784747 24.64989439009083 25.422837864099325 25.42876348796238 24 24.98016830024652 24.868027604451733 25.416497552975326 24.73530654232642 25 25.004093829945173 24.552657485018496 25.484011762194676 24.95923692284166 26 24.326106737148493 25.47929511376409 25.843258646045463 24.35133950304195 27 24.853477729506952 25.0620943477258 25.28358224171746 24.800845681049786 28 24.5405250414171 24.96482732254365 25.482286224034663 25.012361412004587 29 24.707233914033594 24.604712420520354 25.318348671202926 25.36970499424312 30 24.382552623446465 25.128822706694574 25.584409378076405 24.904215291782556 31 25.242297766591264 24.516137254277247 24.9556822888457 25.28588269028579 32 25.046769108430418 25.10328709096146 24.693643224341347 25.156300576266784 33 24.38310583575571 24.983018923227693 25.474609944985133 25.159265296031464 34 25.176657843863136 24.958806385551842 25.517293671921692 24.347242098663326 35 25.181659929553412 24.789412112531032 25.663431492988476 24.36549646492708 36 24.323542455739695 25.326185584878345 25.34714965157594 25.003122307806024 37 25.24859787358497 24.81480207110734 25.035204491902014 24.90139556340568 38 24.78533846588132 25.045066974398644 25.046532567062012 25.12306199265802 39 25.54561974961259 24.55384450697333 24.732064574667646 25.168471168746432 40 25.69598605351759 24.763353272657298 25.224604123285683 24.316056550539432 41 24.753713021908247 24.911288262014555 25.868655015996467 24.46634370008073 42 25.65911961066417 25.349073110060772 25.17971355424412 23.812093725030934 43 24.668783343878488 24.71147370305733 25.577578258755825 25.042164694308354 44 24.441571532429535 25.2231197063428 25.01878047646021 25.316528284767458 45 24.561770161184985 25.384293368522126 25.11043755125239 24.943498919040497 46 24.647505474823458 24.773663757592594 25.14786961350327 25.430961154080677 47 25.159564605426056 24.777896646355643 25.44667576128103 24.61586298693727 48 25.13342372674005 25.206379871495237 24.63400865024123 25.026187751523477 49 24.833111069624717 25.187756020075735 24.949202176294094 25.029930734005458 50 24.684714189502174 25.766749986778798 24.599779922762703 24.948755900956325 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 12.0 1 22.5 2 33.0 3 101.0 4 169.0 5 187.0 6 205.0 7 198.0 8 191.0 9 246.5 10 302.0 11 443.5 12 585.0 13 1089.5 14 1594.0 15 2011.5 16 2429.0 17 2436.5 18 2444.0 19 2506.5 20 2569.0 21 3047.0 22 3525.0 23 4355.0 24 5185.0 25 6779.0 26 8373.0 27 11227.0 28 14081.0 29 17360.5 30 20640.0 31 24242.5 32 27845.0 33 33322.0 34 38799.0 35 46184.5 36 53570.0 37 59479.0 38 65388.0 39 68518.5 40 71649.0 41 76417.0 42 81185.0 43 83943.0 44 86701.0 45 94068.0 46 101435.0 47 106535.5 48 111636.0 49 116721.5 50 121807.0 51 119048.0 52 116289.0 53 115759.5 54 115230.0 55 113651.5 56 112073.0 57 107492.0 58 102911.0 59 94416.0 60 85921.0 61 75873.0 62 65825.0 63 56715.5 64 47606.0 65 40470.0 66 33334.0 67 28429.5 68 23525.0 69 20366.5 70 17208.0 71 13406.5 72 9605.0 73 8185.0 74 6765.0 75 5348.5 76 3932.0 77 3366.5 78 2801.0 79 2324.5 80 1848.0 81 1423.5 82 999.0 83 831.5 84 664.0 85 473.5 86 283.0 87 203.0 88 123.0 89 94.0 90 65.0 91 51.5 92 38.0 93 29.0 94 20.0 95 19.0 96 18.0 97 15.0 98 12.0 99 14.5 100 17.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.008219366611785935 2 7.645922429568311E-4 3 3.1858010123201295E-4 4 0.0 5 0.0 6 1.9114806073920778E-4 7 6.371602024640259E-5 8 0.0 9 0.0010831723441888442 10 9.557403036960389E-4 11 0.0 12 1.9114806073920778E-4 13 3.1858010123201295E-4 14 1.9114806073920778E-4 15 0.004969849579219402 16 5.097281619712207E-4 17 0.0 18 1.9114806073920778E-4 19 0.0 20 3.1858010123201295E-4 21 0.0 22 2.5486408098561035E-4 23 5.734441822176234E-4 24 4.4601214172481816E-4 25 0.0018477645871456754 26 0.004842417538726597 27 0.004969849579219402 28 0.004077825295769766 29 0.0023574927491168958 30 0.0037592451945377527 31 0.007263626308089896 32 0.003313233052812935 33 0.004460121417248181 34 0.0029309369313345194 35 0.0030583689718273245 36 0.0071361942675970905 37 0.003950393255276961 38 0.008474230692771544 39 0.0035680971337985453 40 0.0022937767288704934 41 0.0035043811135521425 42 0.001401752445420857 43 0.0014654684656672597 44 9.557403036960389E-4 45 0.0015929005061600648 46 4.4601214172481816E-4 47 0.0023574927491168958 48 0.0017840485668992726 49 4.4601214172481816E-4 50 9.557403036960389E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1569464.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.52404118953553 #Duplication Level Percentage of deduplicated Percentage of total 1 75.32233523338992 40.31555773523966 2 13.941641131664461 14.924259483618629 3 4.619661099787946 7.417887929602351 4 1.9827824197594885 4.245061116203752 5 1.0479318242405837 2.8044773062239052 6 0.6488923611112265 2.0838804878215353 7 0.4482590048909371 1.679484340895391 8 0.3037660364840744 1.3007028679004444 9 0.24490400209537747 1.179742670607157 >10 1.298125967784935 12.379005132425482 >50 0.07919037582441034 2.9371061121943582 >100 0.05556510848877315 5.929023772711917 >500 0.0056281969045139674 2.0268583075090034 >1k 0.0013172375733968861 0.7769527370465845 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 6.371602024640259E-5 7 0.0 0.0 0.0 0.0 6.371602024640259E-5 8 0.0 0.0 0.0 0.0 6.371602024640259E-5 9 0.0 0.0 0.0 0.0 1.9114806073920778E-4 10 0.0 0.0 0.0 0.0 1.9114806073920778E-4 11 0.0 0.0 0.0 0.0 1.9114806073920778E-4 12 0.0 0.0 0.0 0.0 2.5486408098561035E-4 13 0.0 0.0 0.0 0.0 2.5486408098561035E-4 14 0.0 0.0 0.0 0.0 3.1858010123201295E-4 15 0.0 0.0 0.0 0.0 3.8229612147841556E-4 16 0.0 0.0 0.0 0.0 3.8229612147841556E-4 17 0.0 0.0 0.0 0.0 3.8229612147841556E-4 18 0.0 0.0 0.0 0.0 3.8229612147841556E-4 19 0.0 0.0 0.0 0.0 3.8229612147841556E-4 20 0.0 0.0 0.0 1.9114806073920778E-4 3.8229612147841556E-4 21 0.0 0.0 0.0 1.9114806073920778E-4 4.4601214172481816E-4 22 0.0 0.0 0.0 2.5486408098561035E-4 4.4601214172481816E-4 23 0.0 0.0 0.0 3.1858010123201295E-4 4.4601214172481816E-4 24 0.0 0.0 0.0 5.097281619712207E-4 4.4601214172481816E-4 25 0.0 0.0 0.0 5.734441822176234E-4 4.4601214172481816E-4 26 0.0 0.0 0.0 8.920242834496363E-4 4.4601214172481816E-4 27 0.0 0.0 0.0 0.0011468883644352467 4.4601214172481816E-4 28 0.0 0.0 0.0 0.0018477645871456752 4.4601214172481816E-4 29 0.0 0.0 0.0 0.00516099763995861 4.4601214172481816E-4 30 0.0 0.0 0.0 0.011405167624106064 4.4601214172481816E-4 31 0.0 0.0 0.0 0.026633296462996284 4.4601214172481816E-4 32 0.0 0.0 0.0 0.04256230152459693 5.097281619712207E-4 33 0.0 0.0 0.0 0.05734441822176233 5.097281619712207E-4 34 0.0 0.0 0.0 0.07461145970853744 5.097281619712207E-4 35 0.0 0.0 0.0 0.09531916628861828 5.097281619712207E-4 36 0.0 0.0 0.0 0.12666744824984835 5.097281619712207E-4 37 0.0 0.0 0.0 0.17381730323218628 5.097281619712207E-4 38 0.0 0.0 0.0 0.24008196428844497 5.097281619712207E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCGA 65 5.9302147E-7 27.078432 9 GTATCAA 1800 0.0 27.011757 1 AGTATCG 75 2.065637E-6 23.465733 8 GTCCTAA 660 0.0 21.333841 1 TATCGAG 90 1.0017893E-5 19.556646 10 AATCGGT 90 1.00289235E-5 19.554153 19 CTAAGAC 170 5.456968E-12 19.410374 3 ATACGTA 70 8.12349E-4 18.857594 25 CGGGATT 210 0.0 18.855791 44 GGTATCA 755 0.0 18.649454 1 AACGCAG 2640 0.0 18.33202 6 TCAACGC 2625 0.0 18.269167 4 ATCAACG 2660 0.0 18.194185 3 TATCAAC 2710 0.0 18.102022 2 TTAGGAC 620 0.0 18.095476 3 CAACGCA 2690 0.0 17.909496 5 TAGGACG 805 0.0 17.216156 4 TTCTCGC 530 0.0 17.017649 42 ATTTCGT 470 0.0 16.849855 42 TCCTAAA 785 0.0 16.814081 2 >>END_MODULE