##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063975_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2442538 Sequences flagged as poor quality 0 Sequence length 50 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.356324446129396 32.0 32.0 32.0 32.0 32.0 2 31.408034593525258 32.0 32.0 32.0 32.0 32.0 3 31.48004002394231 32.0 32.0 32.0 32.0 32.0 4 31.56085104919555 32.0 32.0 32.0 32.0 32.0 5 31.512777692711435 32.0 32.0 32.0 32.0 32.0 6 35.10622925825514 36.0 36.0 36.0 36.0 36.0 7 35.12129227876905 36.0 36.0 36.0 36.0 36.0 8 35.063867583636366 36.0 36.0 36.0 36.0 36.0 9 35.17134963713973 36.0 36.0 36.0 36.0 36.0 10 35.02830252794429 36.0 36.0 36.0 36.0 36.0 11 35.16341240136285 36.0 36.0 36.0 36.0 36.0 12 35.08285070692861 36.0 36.0 36.0 36.0 36.0 13 35.11859508429347 36.0 36.0 36.0 36.0 36.0 14 35.05575716733988 36.0 36.0 36.0 36.0 36.0 15 35.036463711107054 36.0 36.0 36.0 36.0 36.0 16 35.04241407912589 36.0 36.0 36.0 36.0 36.0 17 35.015349607662195 36.0 36.0 36.0 36.0 36.0 18 35.00692681137407 36.0 36.0 36.0 36.0 36.0 19 35.01115847532362 36.0 36.0 36.0 36.0 36.0 20 35.001999968884824 36.0 36.0 36.0 36.0 36.0 21 34.99928680741098 36.0 36.0 36.0 36.0 36.0 22 34.98680634651334 36.0 36.0 36.0 36.0 36.0 23 34.92631353125315 36.0 36.0 36.0 32.0 36.0 24 34.90000728750177 36.0 36.0 36.0 32.0 36.0 25 34.87854191009516 36.0 36.0 36.0 32.0 36.0 26 34.815411674250306 36.0 36.0 36.0 32.0 36.0 27 34.80957553168057 36.0 36.0 36.0 32.0 36.0 28 34.79028166603754 36.0 36.0 36.0 32.0 36.0 29 34.765604874929274 36.0 36.0 36.0 32.0 36.0 30 34.749248527556176 36.0 36.0 36.0 32.0 36.0 31 34.74015225146958 36.0 36.0 36.0 32.0 36.0 32 34.711996701791335 36.0 36.0 36.0 32.0 36.0 33 34.68854118134498 36.0 36.0 36.0 32.0 36.0 34 34.69050880682307 36.0 36.0 36.0 32.0 36.0 35 34.65154032403999 36.0 36.0 36.0 32.0 36.0 36 34.627523092783 36.0 36.0 36.0 32.0 36.0 37 34.61984501367021 36.0 36.0 36.0 32.0 36.0 38 34.5928112479724 36.0 36.0 36.0 32.0 36.0 39 34.589860628575686 36.0 36.0 36.0 32.0 36.0 40 34.57378800247939 36.0 36.0 36.0 32.0 36.0 41 34.55693585933975 36.0 36.0 36.0 32.0 36.0 42 34.511378738017584 36.0 36.0 36.0 32.0 36.0 43 34.49584694281113 36.0 36.0 36.0 32.0 36.0 44 34.44411837195573 36.0 36.0 36.0 32.0 36.0 45 34.429785739259735 36.0 36.0 36.0 32.0 36.0 46 34.41144416176944 36.0 36.0 36.0 32.0 36.0 47 34.395317084114964 36.0 36.0 36.0 32.0 36.0 48 34.35395764569476 36.0 36.0 36.0 32.0 36.0 49 34.34450436390345 36.0 36.0 36.0 32.0 36.0 50 33.737877568332614 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 14.0 20 18.0 21 95.0 22 255.0 23 784.0 24 1929.0 25 4289.0 26 9110.0 27 16032.0 28 27029.0 29 41197.0 30 59034.0 31 85193.0 32 122333.0 33 197903.0 34 417421.0 35 1459898.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.71741564867759 17.574063951619674 11.822266988492474 26.886253411210266 2 16.505556331163316 19.709939984335907 36.23559843097052 27.548905253530254 3 18.552998595307237 22.997371165190806 28.300076109701138 30.149554129800816 4 12.805286959711578 15.736418430337624 34.65571467055988 36.80257993939091 5 14.932705243480346 36.039971537802074 33.11105088231995 15.916272336397633 6 35.6599100113407 34.580537393604175 16.106291427331495 13.653261167723633 7 31.252530669980167 29.83858982573433 19.945343669589178 18.96353583469633 8 28.58710898254193 32.81885481413186 18.56892298093213 20.025113222394083 9 27.307777025361702 14.109302674061269 17.92379289761073 40.659127402966305 10 16.193834554205583 26.661974783379105 31.053675799871932 26.09051486254338 11 37.79462182369323 20.767087349306337 21.754584780257257 19.683706046743183 12 24.897319834794658 23.167028039709546 28.21980924743791 23.715842878057888 13 29.959480522032695 19.17475698343807 24.672665094252718 26.193097400276518 14 23.94177522196211 18.969889467249995 24.527396548011204 32.56093876277669 15 25.58574861920301 26.848384600582207 21.54612414685375 26.019742633361037 16 26.41893587639308 25.418738129560616 22.89662671743943 25.265699276606878 17 24.84457758469984 25.554699887862498 24.360654516185427 25.240068011252237 18 25.457968137929228 24.73576556747763 25.10411344312122 24.70215285147192 19 26.00566542083088 24.6374978147721 24.582841529115015 24.773995235282005 20 26.295219691138662 23.97630316230778 24.275502350031935 25.452974796521627 21 27.03978402792505 23.983946206773446 23.99770238989117 24.978567375410332 22 26.555391609376482 23.817745163223798 24.293234572591764 25.333628654807956 23 25.288032088131825 23.84550728897947 24.786501498655284 26.079959124233426 24 25.449258083943395 24.390272860852715 24.471008918222807 25.689460136981086 25 25.467555267325338 24.029311047896982 24.732527271327807 25.77060641344987 26 25.321176567887832 24.731475999682285 24.828305954817054 25.11904147761283 27 25.880595254960113 24.338043762196087 24.245961524446216 25.535399458397578 28 25.412897036852943 24.178719860532738 24.933171254775456 25.475211847838857 29 25.351928724581562 24.466308477200734 24.68489876432413 25.496864033893573 30 25.256534710744138 24.548108728219166 24.889772880341393 25.3055836806953 31 25.693858148559713 24.281452596220536 24.29570112162099 25.72898813359876 32 25.729573617353697 24.291184194257088 24.01949023400236 25.959751954386856 33 25.243508686883242 24.162244136753007 24.494496846977054 26.0997503293867 34 25.831393354093773 24.152802945875194 24.702493299804377 25.31331040022666 35 25.921896904109946 24.070774431066333 24.823456968045384 25.183871696778336 36 25.17397107715488 24.474893136147006 24.5882261419283 25.76290964476981 37 26.02564233790321 24.195222410330633 24.324150594998045 25.454984656768115 38 25.28299646446346 24.185403782020966 24.646436109558643 25.885163643956933 39 25.91114102664885 24.213120365275266 24.115021421271912 25.760717186803973 40 25.985737482220983 24.256310988067074 24.560263600282664 25.19768792942928 41 25.181936504518166 24.597692584523966 24.908443204899296 25.311927706058572 42 26.114569101789936 24.413355054327734 24.513048359236535 24.959027484645798 43 25.684102440648072 23.743063991218857 24.61626517344679 25.95656839468628 44 25.24306982822574 24.270954281418934 24.59160829770056 25.894367592654767 45 25.428688287330775 24.304516380492355 24.547831758245312 25.718963573931557 46 25.293007172519168 24.2231272085312 24.730104232641985 25.75376138630765 47 25.38145530295338 24.141039792211878 24.964953768452496 25.512551136382243 48 25.769165419644334 24.713846758526664 24.216689150598672 25.300298671230326 49 25.289966207115093 24.615336745647742 24.417754406708465 25.6769426405287 50 25.23376538835208 24.782508834139268 24.48265372589624 25.501072051612418 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 5.0 1 18.0 2 31.0 3 94.0 4 157.0 5 189.0 6 221.0 7 224.5 8 228.0 9 305.0 10 382.0 11 571.0 12 760.0 13 1341.0 14 1922.0 15 2621.0 16 3320.0 17 3384.0 18 3448.0 19 3370.0 20 3292.0 21 3973.0 22 4654.0 23 5715.0 24 6776.0 25 8711.5 26 10647.0 27 13380.5 28 16114.0 29 19234.0 30 22354.0 31 26106.5 32 29859.0 33 35249.0 34 40639.0 35 48299.5 36 55960.0 37 66690.0 38 77420.0 39 86283.5 40 95147.0 41 105718.0 42 116289.0 43 123042.0 44 129795.0 45 142662.0 46 155529.0 47 166546.0 48 177563.0 49 186867.0 50 196171.0 51 194698.0 52 193225.0 53 194099.0 54 194973.0 55 193000.0 56 191027.0 57 185624.0 58 180221.0 59 166702.5 60 153184.0 61 134245.0 62 115306.0 63 100538.0 64 85770.0 65 72764.5 66 59759.0 67 51238.5 68 42718.0 69 36744.5 70 30771.0 71 23607.5 72 16444.0 73 13911.5 74 11379.0 75 9034.5 76 6690.0 77 5765.5 78 4841.0 79 4056.0 80 3271.0 81 2618.5 82 1966.0 83 1576.5 84 1187.0 85 872.5 86 558.0 87 404.0 88 250.0 89 184.0 90 118.0 91 93.5 92 69.0 93 62.0 94 55.0 95 43.0 96 31.0 97 27.0 98 23.0 99 21.0 100 19.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.00912984772396581 2 3.6846919065332864E-4 3 4.50351233020735E-4 4 0.0 5 0.0 6 3.2752816946962545E-4 7 1.2282306355110954E-4 8 0.0 9 0.0014738767626133146 10 9.0070246604147E-4 11 0.0 12 8.188204236740636E-5 13 3.6846919065332864E-4 14 1.6376408473481273E-4 15 0.004421630287839944 16 8.597614448577668E-4 17 4.094102118370318E-5 18 4.0941021183703183E-4 19 4.094102118370318E-5 20 7.369383813066573E-4 21 0.0 22 8.188204236740636E-5 23 6.141153177555477E-4 24 4.50351233020735E-4 25 0.0018832869744503464 26 0.004585394372574756 27 0.006386799304657697 28 0.004135043139554021 29 0.0028249304616755192 30 0.0033162227158799575 31 0.007369383813066573 32 0.0034390457794310674 33 0.004912922542044382 34 0.002947753525226629 35 0.0030296355675940353 36 0.007287501770699166 37 0.0038075149700843957 38 0.007901617088454714 39 0.004339748245472537 40 0.0021289331015525654 41 0.0026611663769407065 42 0.0019242279956340495 43 0.0012691716566947985 44 0.0012282306355110954 45 0.0011872896143273921 46 8.597614448577668E-4 47 0.002047051059185159 48 0.0021698741227362687 49 4.912922542044382E-4 50 0.0010235255295925796 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2442538.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.17537554843001 #Duplication Level Percentage of deduplicated Percentage of total 1 74.80801349055577 39.77944211392322 2 14.247236211442104 15.152042721412503 3 4.6547165125538745 7.425488958795921 4 2.033135980796484 4.324510772795145 5 1.119282012810992 2.975912068791357 6 0.697656675244526 2.225889342599805 7 0.4685865074881953 1.74420844588284 8 0.34546083322910026 1.4696007635384767 9 0.23571470439594316 1.12807961356873 >10 1.2586806682401377 11.736419202122537 >50 0.07338260658106513 2.6972613470020743 >100 0.049770041153901406 5.429275544213433 >500 0.005575837005365889 1.9269437127283744 >1k 0.0027879185026793716 1.9849253926255237 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.2282306355110954E-4 2 0.0 0.0 0.0 0.0 1.6376408473481273E-4 3 0.0 0.0 0.0 0.0 1.6376408473481273E-4 4 0.0 0.0 0.0 0.0 1.6376408473481273E-4 5 0.0 0.0 0.0 4.094102118370318E-5 1.6376408473481273E-4 6 0.0 0.0 0.0 4.094102118370318E-5 2.456461271022191E-4 7 0.0 0.0 0.0 4.094102118370318E-5 2.456461271022191E-4 8 0.0 0.0 0.0 4.094102118370318E-5 2.456461271022191E-4 9 0.0 0.0 0.0 4.094102118370318E-5 2.456461271022191E-4 10 0.0 0.0 0.0 4.094102118370318E-5 2.8658714828592226E-4 11 0.0 0.0 0.0 4.094102118370318E-5 2.8658714828592226E-4 12 0.0 0.0 0.0 4.094102118370318E-5 4.912922542044382E-4 13 0.0 0.0 0.0 4.094102118370318E-5 6.550563389392509E-4 14 0.0 0.0 0.0 4.094102118370318E-5 6.550563389392509E-4 15 0.0 0.0 0.0 4.094102118370318E-5 6.959973601229541E-4 16 0.0 0.0 0.0 1.2282306355110954E-4 6.959973601229541E-4 17 0.0 0.0 0.0 1.6376408473481273E-4 6.959973601229541E-4 18 0.0 0.0 0.0 2.0470510591851591E-4 7.369383813066573E-4 19 0.0 0.0 0.0 2.456461271022191E-4 7.778794024903605E-4 20 0.0 0.0 0.0 2.8658714828592226E-4 8.188204236740637E-4 21 0.0 0.0 0.0 2.8658714828592226E-4 8.188204236740637E-4 22 0.0 0.0 0.0 3.6846919065332864E-4 8.188204236740637E-4 23 0.0 0.0 0.0 4.50351233020735E-4 8.597614448577668E-4 24 0.0 0.0 0.0 5.731742965718445E-4 8.597614448577668E-4 25 0.0 0.0 0.0 6.959973601229541E-4 8.597614448577668E-4 26 0.0 0.0 0.0 8.188204236740637E-4 9.0070246604147E-4 27 0.0 0.0 0.0 0.0011872896143273924 0.0010235255295925796 28 0.0 0.0 0.0 0.0027021073981244098 0.0010235255295925796 29 0.0 0.0 0.0 0.006018330114004367 0.0010235255295925796 30 0.0 0.0 0.0 0.013674301075356863 0.0010235255295925796 31 0.0 0.0 0.0 0.03275281694696255 0.0010235255295925796 32 0.0 0.0 0.0 0.054246853068406715 0.0010235255295925796 33 0.0 0.0 0.0 0.07569994816866718 0.0010235255295925796 34 0.0 0.0 0.0 0.10153373253558388 0.0010644665507762827 35 0.0 4.094102118370318E-5 0.0 0.13211667535981017 0.0010644665507762827 36 0.0 4.094102118370318E-5 0.0 0.17412216309428963 0.0010644665507762827 37 0.0 4.094102118370318E-5 0.0 0.23897274064927546 0.0010644665507762827 38 0.0 4.094102118370318E-5 0.0 0.3299436897194639 0.001105407571959986 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 2555 0.0 29.103054 1 GGTATCA 1090 0.0 24.219631 1 TCAACGC 3755 0.0 19.743486 4 ATCAACG 3855 0.0 19.2884 3 TATCAAC 3870 0.0 19.213243 2 CAACGCA 3875 0.0 19.188847 5 AACGCAG 4010 0.0 18.65256 6 TAGGACG 225 1.8189894E-12 16.621504 4 CGCAATA 560 0.0 16.108423 36 TTAACGG 110 5.621186E-5 16.001274 35 ACCGTCG 680 0.0 15.852256 8 TATACCG 125 9.45196E-6 15.8393135 5 TCTAGCG 570 0.0 15.825497 28 CTAGCGG 570 0.0 15.825172 29 ATACCGT 715 0.0 15.691629 6 TACCGTC 735 0.0 15.563952 7 TACTACG 85 0.0029823717 15.528421 2 AGAGTAC 4860 0.0 15.299749 11 ACGCAGA 4910 0.0 15.188751 7 CAGAGTA 4990 0.0 15.077813 10 >>END_MODULE