##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063969_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3910979 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.365070740599734 32.0 32.0 32.0 32.0 32.0 2 31.448819592229977 32.0 32.0 32.0 32.0 32.0 3 31.502953096910005 32.0 32.0 32.0 32.0 32.0 4 31.577765311447592 32.0 32.0 32.0 32.0 32.0 5 31.53357918822883 32.0 32.0 32.0 32.0 32.0 6 35.1221259434019 36.0 36.0 36.0 36.0 36.0 7 35.135779558008366 36.0 36.0 36.0 36.0 36.0 8 35.08496798371968 36.0 36.0 36.0 36.0 36.0 9 35.188483241664045 36.0 36.0 36.0 36.0 36.0 10 35.04819534955314 36.0 36.0 36.0 36.0 36.0 11 35.181293737450396 36.0 36.0 36.0 36.0 36.0 12 35.08837633748481 36.0 36.0 36.0 36.0 36.0 13 35.12716125553218 36.0 36.0 36.0 36.0 36.0 14 35.068512001726425 36.0 36.0 36.0 36.0 36.0 15 35.0524359757493 36.0 36.0 36.0 36.0 36.0 16 35.060297690169136 36.0 36.0 36.0 36.0 36.0 17 35.01949460736046 36.0 36.0 36.0 36.0 36.0 18 35.014757174610246 36.0 36.0 36.0 36.0 36.0 19 35.01779937964382 36.0 36.0 36.0 36.0 36.0 20 35.00965691710439 36.0 36.0 36.0 36.0 36.0 21 35.00586298213312 36.0 36.0 36.0 36.0 36.0 22 34.994512627145276 36.0 36.0 36.0 36.0 36.0 23 34.940169456292146 36.0 36.0 36.0 36.0 36.0 24 34.91068144318852 36.0 36.0 36.0 32.0 36.0 25 34.88574727708842 36.0 36.0 36.0 32.0 36.0 26 34.824471570928914 36.0 36.0 36.0 32.0 36.0 27 34.82527316050534 36.0 36.0 36.0 32.0 36.0 28 34.802049052168265 36.0 36.0 36.0 32.0 36.0 29 34.77513430780375 36.0 36.0 36.0 32.0 36.0 30 34.76241089507256 36.0 36.0 36.0 32.0 36.0 31 34.755126785390566 36.0 36.0 36.0 32.0 36.0 32 34.71770853282516 36.0 36.0 36.0 32.0 36.0 33 34.69501856184858 36.0 36.0 36.0 32.0 36.0 34 34.688022615309364 36.0 36.0 36.0 32.0 36.0 35 34.64437906723611 36.0 36.0 36.0 32.0 36.0 36 34.629213554969226 36.0 36.0 36.0 32.0 36.0 37 34.62383254934378 36.0 36.0 36.0 32.0 36.0 38 34.57956153689396 36.0 36.0 36.0 32.0 36.0 39 34.58072186017874 36.0 36.0 36.0 32.0 36.0 40 34.55298430393004 36.0 36.0 36.0 32.0 36.0 41 34.539010820564364 36.0 36.0 36.0 32.0 36.0 42 34.47554691549098 36.0 36.0 36.0 32.0 36.0 43 34.46147831527605 36.0 36.0 36.0 32.0 36.0 44 34.394848706679326 36.0 36.0 36.0 32.0 36.0 45 34.36453890445333 36.0 36.0 36.0 32.0 36.0 46 34.334655338215825 36.0 36.0 36.0 32.0 36.0 47 34.30381037586753 36.0 36.0 36.0 32.0 36.0 48 34.26129595684354 36.0 36.0 36.0 32.0 36.0 49 34.238265150490456 36.0 36.0 36.0 32.0 36.0 50 33.64308067110562 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 5.0 18 2.0 19 12.0 20 45.0 21 144.0 22 452.0 23 1261.0 24 3191.0 25 7416.0 26 14590.0 27 26954.0 28 44145.0 29 67954.0 30 97317.0 31 137920.0 32 197016.0 33 311776.0 34 646833.0 35 2353945.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.08809619336868 18.274760824554043 12.491743642892706 26.14539933918458 2 16.119699511117474 19.969010166301878 36.89505901364371 27.016231308936938 3 18.291309987494124 23.59504479845235 28.49793183823618 29.61571337581735 4 12.556779261663129 16.11926323306773 35.01977382133732 36.304183683931825 5 14.700564743507954 36.39508164068383 32.73405456792277 16.170299047885454 6 34.861903965610615 35.06857882460993 16.375076899002654 13.694440310776804 7 31.067759591344764 30.38823576940169 19.822300020404125 18.721704618849422 8 28.597289834591287 32.46831547804271 18.64845093773196 20.285943749634043 9 27.370669265869964 14.594335584623858 18.451104618784935 39.58389053072124 10 16.449740816586917 26.5135950796446 30.502230028251542 26.534434075516945 11 37.281458171982 21.36286080799718 21.898864708810763 19.456816311210055 12 25.309724557175638 23.702503851341415 27.744283714419037 23.243487877063902 13 29.20311759294251 19.59538896528377 25.079072536043522 26.1224209057302 14 24.050164575666326 19.751330041905238 24.821099231980224 31.377406150448213 15 25.432222827379352 27.06704203455532 22.076822567076555 25.423912570988765 16 26.17006528069728 25.96262244765156 23.143491477917042 24.723820793734117 17 24.36522926868183 25.899269722491482 24.578705229560168 25.15679577926652 18 24.936473560267657 25.018345832363835 25.81443989598488 24.23074071138362 19 25.700560243642446 24.76662481011778 25.426664488182876 24.1061504580569 20 26.219581886860766 24.056399581585143 24.703428910257376 25.02058962129671 21 27.247806751199636 23.998645863350326 24.400463413380642 24.3530839720694 22 26.284105332382847 24.03246558656007 24.89355587306685 24.78987320799024 23 24.785090688916664 24.014025229662753 25.468044609087503 25.73283947233308 24 24.917028044265347 24.871182522961114 25.112555485098287 25.099233947675252 25 25.113631249718733 24.31869832386236 25.27970572472395 25.28796470169496 26 24.78722740508977 25.324055653803313 25.45965631127344 24.429060629833472 27 25.500897658722966 24.57112216162255 24.763976230518658 25.164003949135825 28 24.822831046725554 24.511744994329828 25.587684408492862 25.07773955045176 29 24.824808802133543 24.66571376701348 25.596146126053792 24.91333130479919 30 24.741397341635757 24.726029744100096 25.70119458140045 24.831378332863697 31 25.282175701232827 24.635204480852966 24.77157448671383 25.311045331200372 32 25.09651996280092 24.626289585713998 24.586988656427287 25.6902017950578 33 24.65333162183268 24.485207366885223 25.086235596929324 25.775225414352775 34 25.449587699486127 24.57065081065269 25.188366449229466 24.791395040631716 35 25.738986132223946 24.40585394791178 25.303225756961695 24.55193416290258 36 24.674546922777544 24.807694373030724 25.038650349732606 25.47910835445912 37 25.666528162216412 24.67571420352483 24.762396681007203 24.89536095325155 38 24.85966620604724 24.503666373793177 25.23277305509329 25.403894365066293 39 25.587796237797235 24.541614822974566 24.541026707108582 25.329562232119617 40 25.578002313543436 24.747959796301807 25.094837893427673 24.579199996727084 41 24.736705103579197 25.17945067331079 25.37613556631544 24.707708656794576 42 25.863507028539633 24.979927955423182 24.86772906166132 24.28883595437586 43 25.2517369922783 24.284242584942138 25.06272809489924 25.40129232788032 44 24.886727535487775 24.736456141822238 24.789742782012638 25.587073540677345 45 25.111910865076677 24.93126306436457 24.840005880961666 25.11682018959709 46 25.015878551835165 24.819710677955353 24.727558824792837 25.43685194541665 47 25.17508122812683 24.599433531778754 25.123226143145093 25.102259096949318 48 25.835177749185355 25.149811910494353 24.228439255987873 24.786571084332422 49 25.080178503441992 25.173812779007516 24.487127332642796 25.2588813849077 50 25.12435031387699 25.238696605689647 24.61495701658456 25.0219960638488 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 35.0 1 57.0 2 79.0 3 173.5 4 268.0 5 328.0 6 388.0 7 407.5 8 427.0 9 594.0 10 761.0 11 1225.5 12 1690.0 13 3320.0 14 4950.0 15 6921.5 16 8893.0 17 9493.0 18 10093.0 19 10286.5 20 10480.0 21 11305.5 22 12131.0 23 13627.0 24 15123.0 25 18455.5 26 21788.0 27 26838.5 28 31889.0 29 37471.0 30 43053.0 31 48520.0 32 53987.0 33 62413.5 34 70840.0 35 83862.5 36 96885.0 37 116732.5 38 136580.0 39 151083.5 40 165587.0 41 183923.5 42 202260.0 43 208005.5 44 213751.0 45 234211.0 46 254671.0 47 273151.5 48 291632.0 49 300787.0 50 309942.0 51 300382.5 52 290823.0 53 290598.5 54 290374.0 55 290869.0 56 291364.0 57 283360.0 58 275356.0 59 251610.5 60 227865.0 61 200821.0 62 173777.0 63 150463.5 64 127150.0 65 108399.5 66 89649.0 67 76697.0 68 63745.0 69 56462.5 70 49180.0 71 37829.5 72 26479.0 73 22509.5 74 18540.0 75 14105.5 76 9671.0 77 8413.0 78 7155.0 79 6061.0 80 4967.0 81 4019.0 82 3071.0 83 2503.5 84 1936.0 85 1355.0 86 774.0 87 557.0 88 340.0 89 261.0 90 182.0 91 149.0 92 116.0 93 94.5 94 73.0 95 88.5 96 104.0 97 77.5 98 51.0 99 52.5 100 54.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.009102580197950436 2 4.858118644973548E-4 3 4.60242818997494E-4 4 0.0 5 0.0 6 1.2784522749930387E-4 7 1.2784522749930387E-4 8 0.0 9 9.460546834948487E-4 10 0.0010738999109941526 11 0.0 12 1.0227618199944311E-4 13 3.3239759149819006E-4 14 3.068285459983293E-4 15 0.003809787779479256 16 5.625190009969372E-4 17 0.0 18 2.30121409498747E-4 19 5.1138090999721556E-5 20 7.159332739961018E-4 21 0.0 22 1.7898331849902546E-4 23 6.90364228496241E-4 24 4.858118644973548E-4 25 0.0021222307764884444 26 0.005906449510467839 27 0.006392261374965195 28 0.004193323461977168 29 0.0027870259594848248 30 0.003912063961478699 31 0.007542868422458929 32 0.003323975914981901 33 0.0046279972354748 34 0.003017147368983572 35 0.0029148711869841286 36 0.007082625603461436 37 0.0039376330069785595 38 0.007747420786457815 39 0.004730273417474244 40 0.0024290593224867737 41 0.003963202052478421 42 0.0017131260484906721 43 0.0013295903659927603 44 0.0014062975024923426 45 0.001380728456992482 46 0.0010994689564940133 47 0.002045523639988862 48 0.0019176784124895583 49 4.60242818997494E-4 50 0.0013295903659927603 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3910979.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.63538196734681 #Duplication Level Percentage of deduplicated Percentage of total 1 64.4733356864328 24.90951950954304 2 15.974442308842955 12.343573606349862 3 7.160304160436387 8.299232587225271 4 3.894669021256816 6.018881010905993 5 2.277207981839114 4.399040009872256 6 1.4747062292001685 3.418550307286452 7 1.0137475018319086 2.7416565366203587 8 0.6979329765401509 2.157192570898882 9 0.5053149225962813 1.757073154347685 >10 2.3138148186059135 15.097792148884517 >50 0.11060214101997398 2.954489037896967 >100 0.08193599005330973 6.635654865683647 >500 0.013458256966770258 3.577384239162143 >1k 0.008528004377501763 5.689960415323053 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 4066 0.10396373900243391 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.5569045499860778E-5 2 0.0 0.0 0.0 0.0 2.5569045499860778E-5 3 0.0 0.0 0.0 2.5569045499860778E-5 2.5569045499860778E-5 4 0.0 0.0 0.0 2.5569045499860778E-5 2.5569045499860778E-5 5 0.0 0.0 0.0 2.5569045499860778E-5 2.5569045499860778E-5 6 0.0 0.0 0.0 2.5569045499860778E-5 1.0227618199944311E-4 7 0.0 0.0 0.0 2.5569045499860778E-5 1.0227618199944311E-4 8 0.0 0.0 0.0 2.5569045499860778E-5 1.0227618199944311E-4 9 0.0 0.0 0.0 2.5569045499860778E-5 1.5341427299916466E-4 10 0.0 0.0 0.0 2.5569045499860778E-5 1.5341427299916466E-4 11 0.0 0.0 0.0 2.5569045499860778E-5 1.5341427299916466E-4 12 0.0 0.0 0.0 2.5569045499860778E-5 3.8353568249791165E-4 13 0.0 0.0 0.0 5.1138090999721556E-5 4.346737734976332E-4 14 0.0 0.0 0.0 5.1138090999721556E-5 5.113809099972156E-4 15 0.0 0.0 0.0 5.1138090999721556E-5 5.625190009969371E-4 16 0.0 0.0 0.0 5.1138090999721556E-5 6.136570919966586E-4 17 0.0 0.0 0.0 5.1138090999721556E-5 6.136570919966586E-4 18 0.0 0.0 0.0 5.1138090999721556E-5 6.647951829963802E-4 19 0.0 0.0 0.0 5.1138090999721556E-5 6.647951829963802E-4 20 0.0 0.0 0.0 7.670713649958233E-5 7.159332739961017E-4 21 0.0 0.0 0.0 7.670713649958233E-5 7.670713649958233E-4 22 0.0 0.0 0.0 7.670713649958233E-5 7.670713649958233E-4 23 2.5569045499860778E-5 0.0 0.0 1.7898331849902543E-4 8.437785014954056E-4 24 2.5569045499860778E-5 0.0 0.0 2.556904549986078E-4 8.437785014954056E-4 25 2.5569045499860778E-5 0.0 0.0 2.8125950049846853E-4 8.437785014954056E-4 26 2.5569045499860778E-5 0.0 0.0 3.323975914981901E-4 9.20485637994988E-4 27 2.5569045499860778E-5 0.0 0.0 3.8353568249791165E-4 9.460546834948487E-4 28 2.5569045499860778E-5 0.0 0.0 0.0010994689564940135 9.716237289947096E-4 29 2.5569045499860778E-5 0.0 0.0 0.0021477998219883053 9.716237289947096E-4 30 2.5569045499860778E-5 0.0 0.0 0.004372306780476193 9.716237289947096E-4 31 2.5569045499860778E-5 0.0 0.0 0.012426556112932337 9.971927744945703E-4 32 2.5569045499860778E-5 0.0 0.0 0.022168362448379293 0.0010483308654942918 33 2.5569045499860778E-5 0.0 0.0 0.03257496396682263 0.0010483308654942918 34 2.5569045499860778E-5 0.0 0.0 0.045257210534753574 0.0010994689564940135 35 2.5569045499860778E-5 0.0 0.0 0.06085432828966865 0.0010994689564940135 36 2.5569045499860778E-5 0.0 0.0 0.08504264533253694 0.0010994689564940135 37 2.5569045499860778E-5 0.0 0.0 0.12083930903234202 0.0010994689564940135 38 2.5569045499860778E-5 0.0 0.0 0.17358824989855481 0.001150607047493735 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 7050 0.0 25.83766 1 GGTATCA 2955 0.0 23.153404 1 ATACCGT 1070 0.0 18.914211 6 CGTCGTA 1110 0.0 17.837626 10 ACCGTCG 1130 0.0 17.715925 8 TACCGTC 1120 0.0 17.677456 7 TCAACGC 10620 0.0 17.171736 4 TATCAAC 10715 0.0 17.142672 2 AACGCAG 10730 0.0 17.016201 6 ATCAACG 10730 0.0 16.995699 3 CGCAATA 1130 0.0 16.744877 36 CAACGCA 10950 0.0 16.674322 5 GTATAAT 450 0.0 16.62181 1 CCGTCGT 1215 0.0 16.295893 9 GTCGTAG 1230 0.0 16.097368 11 CGGTCCA 1255 0.0 15.776704 10 CGCCGGT 1200 0.0 15.58235 7 TAGCGGC 1240 0.0 15.436484 30 CTAGCGG 1230 0.0 15.382324 29 CAATACG 1295 0.0 14.610799 38 >>END_MODULE