##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063964_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3676904 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.342390228300765 32.0 32.0 32.0 32.0 32.0 2 31.397615765872594 32.0 32.0 32.0 32.0 32.0 3 31.47732793676419 32.0 32.0 32.0 32.0 32.0 4 31.562639655536287 32.0 32.0 32.0 32.0 32.0 5 31.513472747724716 32.0 32.0 32.0 32.0 32.0 6 35.10098631892483 36.0 36.0 36.0 36.0 36.0 7 35.12027510100889 36.0 36.0 36.0 36.0 36.0 8 35.06387901343086 36.0 36.0 36.0 36.0 36.0 9 35.173652072504474 36.0 36.0 36.0 36.0 36.0 10 35.027814976948 36.0 36.0 36.0 36.0 36.0 11 35.172651774427614 36.0 36.0 36.0 36.0 36.0 12 35.082302937471304 36.0 36.0 36.0 36.0 36.0 13 35.126213520940446 36.0 36.0 36.0 36.0 36.0 14 35.064032131380095 36.0 36.0 36.0 36.0 36.0 15 35.04042096285353 36.0 36.0 36.0 36.0 36.0 16 35.05162631387711 36.0 36.0 36.0 36.0 36.0 17 35.01977750846908 36.0 36.0 36.0 36.0 36.0 18 35.01697487886548 36.0 36.0 36.0 36.0 36.0 19 35.01587803217054 36.0 36.0 36.0 36.0 36.0 20 35.010908090067076 36.0 36.0 36.0 36.0 36.0 21 35.00964643080157 36.0 36.0 36.0 36.0 36.0 22 34.99078055886147 36.0 36.0 36.0 36.0 36.0 23 34.937247205801405 36.0 36.0 36.0 36.0 36.0 24 34.91328438273069 36.0 36.0 36.0 32.0 36.0 25 34.88891007216941 36.0 36.0 36.0 32.0 36.0 26 34.83484039833512 36.0 36.0 36.0 32.0 36.0 27 34.82762182531825 36.0 36.0 36.0 32.0 36.0 28 34.80453093145755 36.0 36.0 36.0 32.0 36.0 29 34.78483963682489 36.0 36.0 36.0 32.0 36.0 30 34.7673433954218 36.0 36.0 36.0 32.0 36.0 31 34.76108949268189 36.0 36.0 36.0 32.0 36.0 32 34.72404446784577 36.0 36.0 36.0 32.0 36.0 33 34.70806281589076 36.0 36.0 36.0 32.0 36.0 34 34.699651935432634 36.0 36.0 36.0 32.0 36.0 35 34.67164277337673 36.0 36.0 36.0 32.0 36.0 36 34.643803319314294 36.0 36.0 36.0 32.0 36.0 37 34.6393509321973 36.0 36.0 36.0 32.0 36.0 38 34.60847631594407 36.0 36.0 36.0 32.0 36.0 39 34.60328607981062 36.0 36.0 36.0 32.0 36.0 40 34.58876951913893 36.0 36.0 36.0 32.0 36.0 41 34.57329617526049 36.0 36.0 36.0 32.0 36.0 42 34.51903775567706 36.0 36.0 36.0 32.0 36.0 43 34.50965894132673 36.0 36.0 36.0 32.0 36.0 44 34.45908269565918 36.0 36.0 36.0 32.0 36.0 45 34.43780909156182 36.0 36.0 36.0 32.0 36.0 46 34.41717814770252 36.0 36.0 36.0 32.0 36.0 47 34.40287644170204 36.0 36.0 36.0 32.0 36.0 48 34.36087017773649 36.0 36.0 36.0 32.0 36.0 49 34.3500317114616 36.0 36.0 36.0 32.0 36.0 50 33.74643722000901 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 1.0 17 3.0 18 2.0 19 11.0 20 31.0 21 112.0 22 369.0 23 1062.0 24 2729.0 25 6082.0 26 12907.0 27 23536.0 28 39299.0 29 61000.0 30 88689.0 31 127795.0 32 185400.0 33 299181.0 34 630156.0 35 2198538.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.73963364647042 17.712246073637353 11.736031364118286 26.81208891577394 2 16.155228176901964 19.905659248428833 36.68815769004407 27.250954884625134 3 18.106341928812743 23.62390648193829 28.767813268481497 29.501938320767472 4 12.288327353664931 16.03949953547876 35.59584367718058 36.076329433675724 5 14.352999153635777 36.635386727529465 33.67001150968314 15.341602609151611 6 34.95567868467423 35.54805285649674 16.370479580755415 13.125788878073616 7 30.602112701912453 30.245888999519433 20.623742317923536 18.52825598064458 8 28.284401301856484 33.23190739597972 18.813224063838508 19.670467238325298 9 27.250564068867533 13.863202692735316 18.001330484522647 40.884902753874506 10 15.491376107665253 27.064699998205 31.955289242667284 25.488634651462466 11 37.446442684629616 20.835067129882713 22.299805651605617 19.418684533882054 12 24.475454866871548 23.483287552013927 29.000870298349152 23.040387282765373 13 29.675523990163406 19.475006268898483 24.927479315354695 25.921990425583413 14 23.58241843119849 19.235327841744777 25.045173972829254 32.13707975422748 15 25.292350740382535 27.15470301472932 21.930765992121298 25.622180252766846 16 26.010878253474345 25.662620751251673 23.443074108815715 24.883426886458263 17 24.27925776686038 25.776468463685752 24.967173469853986 24.97710029959988 18 24.93465945404948 25.117177832352883 25.655839581820505 24.292323131777128 19 25.60807984547861 24.966017587632198 25.017936295283366 24.407966271605826 20 25.862579143186615 24.450974739453017 24.653456191118554 25.03298992624181 21 26.67409864385907 24.351492451257904 24.31809478844158 24.65631411644144 22 26.105598165411582 24.242371497084093 24.705206912016397 24.94682342548793 23 24.96195810182963 24.19176434720103 25.05812693252163 25.788150618447713 24 24.98736702742484 24.80425011817065 24.956525712246723 25.251857142157792 25 25.193910296073057 24.306297627656875 25.051178610699598 25.448613465570467 26 24.99908885933348 25.10146299272991 25.190945165650813 24.708502982285793 27 25.47371541716984 24.692603109326893 24.668532480389917 25.165148993113352 28 25.028204333186466 24.508504816767026 25.304481687581937 25.158809162464575 29 24.94618976776064 24.698012679469432 25.12297344709136 25.232824105678564 30 25.003522094000473 24.774844361521872 25.23320613905064 24.988427405427018 31 25.32255647339162 24.49226101092763 24.74115653872296 25.444025976957786 32 25.26235627690027 24.745571866649442 24.428718102141143 25.563353754309144 33 24.92914256589177 24.49960549387516 24.811647463560877 25.759604476672195 34 25.3651337860636 24.55271604162638 25.14165159242962 24.9404985798804 35 25.69263485869343 24.400530571071037 25.207293421196137 24.699541149039394 36 24.860082276544386 24.820562336381872 24.928949784109065 25.390405602964677 37 25.693577326409507 24.529294862258215 24.72569001441754 25.051437796914737 38 24.99180635304786 24.470105632088522 24.985169839001976 25.552918175861638 39 25.503198904895573 24.50491972887843 24.558228010945605 25.433653355280388 40 25.65664472184765 24.592920252893958 24.90338060453688 24.84705442072151 41 24.79964098972605 24.90310122321872 25.293062534422152 25.00419525263308 42 25.754373062868318 24.76090804356364 24.927709427800266 24.557009465767777 43 25.27649399226456 24.153302167103682 25.067238389020147 25.502965451611615 44 24.88912375195378 24.607795755439373 24.90095454067031 25.60212595193654 45 25.041829260465203 24.74388417048062 24.93983984125551 25.274446727798672 46 24.92991309985901 24.656201589180345 24.920829271901273 25.49305603905937 47 25.086127297328538 24.510250011898854 25.27139583744127 25.13222685333134 48 25.458798123929956 24.942049344069016 24.55582042707927 25.043332104921763 49 24.912310284384745 24.94064948998949 24.762128812840217 25.38491141278555 50 24.9152195262846 25.06466814383729 24.750268504363383 25.269843825514727 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 17.0 1 35.5 2 54.0 3 153.5 4 253.0 5 309.5 6 366.0 7 362.5 8 359.0 9 481.5 10 604.0 11 929.0 12 1254.0 13 2359.0 14 3464.0 15 4603.5 16 5743.0 17 5826.5 18 5910.0 19 6131.0 20 6352.0 21 7777.5 22 9203.0 23 10735.5 24 12268.0 25 16267.5 26 20267.0 27 25522.0 28 30777.0 29 36477.5 30 42178.0 31 47726.5 32 53275.0 33 62311.5 34 71348.0 35 83281.5 36 95215.0 37 111873.0 38 128531.0 39 141979.0 40 155427.0 41 171204.5 42 186982.0 43 195393.5 44 203805.0 45 221260.0 46 238715.0 47 255296.0 48 271877.0 49 281748.5 50 291620.0 51 288313.5 52 285007.0 53 285587.0 54 286167.0 55 280743.5 56 275320.0 57 264373.5 58 253427.0 59 233562.0 60 213697.0 61 188099.0 62 162501.0 63 140550.5 64 118600.0 65 100309.5 66 82019.0 67 69866.5 68 57714.0 69 49918.0 70 42122.0 71 32226.0 72 22330.0 73 19079.0 74 15828.0 75 12558.5 76 9289.0 77 8018.5 78 6748.0 79 5542.5 80 4337.0 81 3561.5 82 2786.0 83 2205.0 84 1624.0 85 1202.5 86 781.0 87 542.0 88 303.0 89 226.5 90 150.0 91 134.5 92 119.0 93 84.0 94 49.0 95 56.0 96 63.0 97 45.0 98 27.0 99 29.5 100 32.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.009410090663231892 2 5.439358764873926E-4 3 2.719679382436963E-4 4 0.0 5 0.0 6 1.3598396912184815E-4 7 2.719679382436963E-5 8 2.719679382436963E-5 9 0.0013054461035697424 10 7.071166394336105E-4 11 5.439358764873926E-5 12 1.0878717529747852E-4 13 5.98329464136132E-4 14 2.1757435059495704E-4 15 0.004242699836601662 16 7.343134332579801E-4 17 0.0 18 3.8075511354117487E-4 19 5.439358764873926E-5 20 6.527230517848712E-4 21 0.0 22 8.15903814731089E-5 23 0.0010062813715016764 24 4.895422888386534E-4 25 0.0020397595368277224 26 0.005276178001927708 27 0.006092081816658798 28 0.00446027418719662 29 0.0025564986194907455 30 0.003100434495978138 31 0.007098363188160475 32 0.0035083864033436827 33 0.004215503042777293 34 0.002746876176261333 35 0.0030188441145050293 36 0.0075879054769991275 37 0.0036171735786411615 38 0.00747911830170165 39 0.004813832506913425 40 0.002882860145383181 41 0.0035083864033436827 42 0.002066956330652092 43 0.0016590044232865477 44 0.001550217247989069 45 0.001414233278867221 46 0.0010878717529747852 47 0.002148546712125201 48 0.0018765787738815045 49 5.16739082663023E-4 50 0.0014958236603403298 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3676904.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.17974059102392 #Duplication Level Percentage of deduplicated Percentage of total 1 68.00927286299424 30.04632032871248 2 15.567287323919569 13.75517431353403 3 6.374659751208394 8.448924424932837 4 3.254484060390751 5.751290461827425 5 1.8742075643230955 4.140100200276458 6 1.1747315795231101 3.1139601868448876 7 0.7498910742163196 2.3190995191280885 8 0.5237193912642034 1.8510229478833173 9 0.37839539665689215 1.5045669418625187 >10 1.9070829625159942 14.776277093163436 >50 0.1093237560027541 3.311812554682441 >100 0.06478606688202297 5.647969286156821 >500 0.008560372429134131 2.653449237444672 >1k 0.003597837673434894 2.6800325035506436 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.99164732068066E-4 2 0.0 0.0 0.0 0.0 2.99164732068066E-4 3 0.0 0.0 0.0 0.0 2.99164732068066E-4 4 0.0 0.0 0.0 0.0 2.99164732068066E-4 5 0.0 0.0 0.0 0.0 3.5355831971680524E-4 6 0.0 0.0 0.0 0.0 4.6234549501428376E-4 7 0.0 0.0 0.0 0.0 4.6234549501428376E-4 8 0.0 0.0 0.0 0.0 4.6234549501428376E-4 9 0.0 0.0 0.0 2.7196793824369633E-5 4.6234549501428376E-4 10 0.0 0.0 0.0 2.7196793824369633E-5 4.6234549501428376E-4 11 0.0 0.0 0.0 2.7196793824369633E-5 4.895422888386533E-4 12 0.0 0.0 0.0 2.7196793824369633E-5 9.246909900285675E-4 13 0.0 0.0 0.0 2.7196793824369633E-5 0.0010606749591504157 14 0.0 0.0 0.0 2.7196793824369633E-5 0.0010606749591504157 15 0.0 0.0 0.0 5.4393587648739266E-5 0.001196658928272264 16 0.0 0.0 0.0 1.3598396912184818E-4 0.0013054461035697424 17 0.0 0.0 0.0 1.3598396912184818E-4 0.0013054461035697424 18 0.0 0.0 0.0 1.9037755677058744E-4 0.0014686268665159601 19 0.0 0.0 0.0 2.7196793824369635E-4 0.0014686268665159601 20 0.0 0.0 0.0 3.263615258924356E-4 0.0017133980109352868 21 0.0 0.0 0.0 3.8075511354117487E-4 0.0017405948047596565 22 0.0 0.0 0.0 4.895422888386533E-4 0.0017949883924083957 23 0.0 0.0 0.0 8.15903814731089E-4 0.0018221851862327654 24 0.0 0.0 0.0 0.0011422653406235246 0.0018221851862327654 25 0.0 0.0 0.0 0.001414233278867221 0.0018221851862327654 26 0.0 0.0 0.0 0.0016590044232865477 0.0018765787738815047 27 0.0 0.0 0.0 0.002148546712125201 0.0019037755677058742 28 0.0 0.0 0.0 0.0034539928156949434 0.0019037755677058742 29 0.0 0.0 0.0 0.006336852961078125 0.0019037755677058742 30 0.0 0.0 0.0 0.013081657829521793 0.0019037755677058742 31 0.0 0.0 0.0 0.030460409083293987 0.0019037755677058742 32 0.0 0.0 0.0 0.048410293007377946 0.0019309723615302439 33 0.0 0.0 0.0 0.06742085189061232 0.0019309723615302439 34 0.0 0.0 0.0 0.08988540358954164 0.0020941531244764618 35 0.0 0.0 0.0 0.11547758657827346 0.0020941531244764618 36 2.7196793824369633E-5 0.0 0.0 0.1529819652620792 0.0020941531244764618 37 2.7196793824369633E-5 0.0 0.0 0.20990485473648482 0.0020941531244764618 38 2.7196793824369633E-5 0.0 0.0 0.29212076246755425 0.002148546712125201 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 4070 0.0 27.40655 1 GGTATCA 1840 0.0 23.555328 1 TCAACGC 6285 0.0 17.571774 4 CAACGCA 6415 0.0 17.215683 5 TATCAAC 6465 0.0 17.149895 2 AACGCAG 6450 0.0 17.122263 6 ATCAACG 6455 0.0 17.109001 3 CGCAATA 830 0.0 16.699265 36 CGTCGTA 775 0.0 16.464085 10 TATAACG 125 9.455474E-6 15.839152 2 CTAGCGG 835 0.0 15.808398 29 TAGGACG 490 0.0 15.7140875 4 ACTAACG 85 0.0029817403 15.529215 3 ACCGTCG 825 0.0 15.199808 8 CAATACG 915 0.0 15.147761 38 GTATAGA 515 0.0 14.95208 1 TCTAGCG 900 0.0 14.911327 28 ACTATAC 370 0.0 14.8646755 3 CCGTCGT 815 0.0 14.847043 9 ATACCGT 845 0.0 14.840049 6 >>END_MODULE