##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063962_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1310199 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.332141911266916 32.0 32.0 32.0 32.0 32.0 2 31.422027493533424 32.0 32.0 32.0 32.0 32.0 3 31.497126009102434 32.0 32.0 32.0 32.0 32.0 4 31.582522960252604 32.0 32.0 32.0 32.0 32.0 5 31.534902713251956 32.0 32.0 32.0 32.0 32.0 6 35.13260046756256 36.0 36.0 36.0 36.0 36.0 7 35.144535295783314 36.0 36.0 36.0 36.0 36.0 8 35.096001447108414 36.0 36.0 36.0 36.0 36.0 9 35.2106557858768 36.0 36.0 36.0 36.0 36.0 10 35.06067475246127 36.0 36.0 36.0 36.0 36.0 11 35.19984216138159 36.0 36.0 36.0 36.0 36.0 12 35.12065800691345 36.0 36.0 36.0 36.0 36.0 13 35.14986196753318 36.0 36.0 36.0 36.0 36.0 14 35.09605182113557 36.0 36.0 36.0 36.0 36.0 15 35.07280497084794 36.0 36.0 36.0 36.0 36.0 16 35.08421239826927 36.0 36.0 36.0 36.0 36.0 17 35.05961995086243 36.0 36.0 36.0 36.0 36.0 18 35.04272480745291 36.0 36.0 36.0 36.0 36.0 19 35.04490386574864 36.0 36.0 36.0 36.0 36.0 20 35.03902765915712 36.0 36.0 36.0 36.0 36.0 21 35.03618915905141 36.0 36.0 36.0 36.0 36.0 22 35.01873303215771 36.0 36.0 36.0 36.0 36.0 23 34.965734212894375 36.0 36.0 36.0 36.0 36.0 24 34.93811703412993 36.0 36.0 36.0 36.0 36.0 25 34.913181890689884 36.0 36.0 36.0 32.0 36.0 26 34.84983731478958 36.0 36.0 36.0 32.0 36.0 27 34.84466481809252 36.0 36.0 36.0 32.0 36.0 28 34.823057413415825 36.0 36.0 36.0 32.0 36.0 29 34.79889009226843 36.0 36.0 36.0 32.0 36.0 30 34.77552035988426 36.0 36.0 36.0 32.0 36.0 31 34.77392136614362 36.0 36.0 36.0 32.0 36.0 32 34.732748994618376 36.0 36.0 36.0 32.0 36.0 33 34.717381863365794 36.0 36.0 36.0 32.0 36.0 34 34.70766349233971 36.0 36.0 36.0 32.0 36.0 35 34.66620719447962 36.0 36.0 36.0 32.0 36.0 36 34.637020025202276 36.0 36.0 36.0 32.0 36.0 37 34.62509282940989 36.0 36.0 36.0 32.0 36.0 38 34.58013782639126 36.0 36.0 36.0 32.0 36.0 39 34.57549502022212 36.0 36.0 36.0 32.0 36.0 40 34.56087434046278 36.0 36.0 36.0 32.0 36.0 41 34.54778319934606 36.0 36.0 36.0 32.0 36.0 42 34.48258775956935 36.0 36.0 36.0 32.0 36.0 43 34.47123833860353 36.0 36.0 36.0 32.0 36.0 44 34.40855015154187 36.0 36.0 36.0 32.0 36.0 45 34.37125734335013 36.0 36.0 36.0 32.0 36.0 46 34.352714358658496 36.0 36.0 36.0 32.0 36.0 47 34.31612526036121 36.0 36.0 36.0 32.0 36.0 48 34.274000361777105 36.0 36.0 36.0 32.0 36.0 49 34.24590462975472 36.0 36.0 36.0 32.0 36.0 50 33.671028599472294 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 4.0 20 7.0 21 37.0 22 139.0 23 372.0 24 1034.0 25 2243.0 26 4675.0 27 8697.0 28 14137.0 29 21615.0 30 31531.0 31 45021.0 32 65905.0 33 106286.0 34 222232.0 35 786263.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.69076697606253 17.782730825598435 11.924844284318514 26.601657914020514 2 15.700587623350149 20.514000609070575 37.51462570781557 26.27078605976371 3 17.892756421754015 24.741049996374585 28.893943267986828 28.472250313884572 4 12.096635701904825 16.27157401280264 36.31746017208073 35.31433011321181 5 13.938416988564335 37.439656113307976 33.63763825189914 14.98428864622855 6 33.9354051830334 35.98364522003544 16.9623217254186 13.118627871512551 7 29.962517087125068 30.701642577413928 21.014091773985133 18.32174856147587 8 28.0000213707994 33.35241440422409 19.3480532346613 19.29951099031521 9 27.789150226227765 13.75753329303365 18.17996556208899 40.27335091864959 10 15.44261036351133 27.159433762812046 32.23395331832791 25.164002555348713 11 37.10672958840603 20.741582003955124 22.955596821551534 19.196091586087306 12 24.749923294036474 23.617575358838895 29.324575369524304 22.30792597760033 13 29.8652718605031 19.622590242361053 25.114601349113187 25.397536548022657 14 23.532568003132354 19.58064321624916 25.63156532948862 31.255223451129872 15 25.009102087641082 27.68752017915656 22.300076556762296 25.003301176440058 16 25.43473133782687 25.611730323460115 24.275193351737972 24.67834498697504 17 23.954452720540925 25.89240260448985 25.44926381412289 24.70388086084633 18 24.593743679375972 24.934227347837535 26.556657596769945 23.915371376016548 19 25.635133010430483 24.77885021958513 25.522249308883083 24.0637674611013 20 25.99279493813874 24.219922301345605 25.17505094680924 24.61223181370641 21 26.740518043442258 24.150835102148605 24.544439432483156 24.564207421925982 22 25.949035222893624 24.48811211121364 24.93430387292312 24.628548792969617 23 24.378888268962314 24.391329203146718 25.61550186194227 25.61428066594871 24 24.873777945353005 24.795926700763477 25.501701660292277 24.828593693591237 25 24.955826376862255 24.439481563856933 25.543154290546806 25.061537768734006 26 24.502913442441766 25.2586376660708 25.826747493004532 24.411701398482904 27 25.195707263456786 24.924205416297742 25.052361615729858 24.827725704515615 28 24.5260106430074 24.90046986771041 25.52741810898855 25.046101380293646 29 24.57963342049786 24.883106415522917 25.346635464513657 25.190624699465562 30 24.57275753999936 24.969125578370654 25.66683407803405 24.791282803595934 31 25.272404325494453 24.558638203547382 24.882889993305817 25.286067477652352 32 24.835745252488245 24.960462844232765 24.926421200464066 25.27737070281492 33 24.49946456390008 24.68173418707977 25.441038295702693 25.37776295331745 34 25.139639646515917 24.785789194891 25.465172902810195 24.609398255782892 35 25.576398625817742 24.61575333107916 25.476487240881085 24.331360802222015 36 24.62458542766309 25.176381685157835 25.239202036509084 24.959830850669995 37 25.302505146384785 25.037648562027197 24.91331098971639 24.746535301871628 38 24.730434251604876 25.020800415244988 25.27376399734365 24.975001335806486 39 25.475692348087193 24.641355943587836 24.809505527259237 25.073446181065727 40 25.611315198749473 24.881789878694853 25.20396254828583 24.302932374269844 41 24.674675400506658 25.143322955410554 25.537475394095193 24.644526249987596 42 25.617611163140026 25.323908594998052 25.054630356847095 24.003849885014834 43 24.87932955777069 24.68363125677388 25.42704055931246 25.00999862614297 44 24.66105879865637 25.120536596796022 24.9346083715023 25.283796233045308 45 24.768467281644842 25.245881869847093 25.02011170967087 24.9655391388372 46 24.595516680786755 24.94897686595074 25.058121341179522 25.397385112082983 47 24.930581315650077 24.8067802095307 25.410749477547117 24.851888997272102 48 25.242221214716302 25.314654784202915 24.600394148527744 24.842729852553035 49 24.78896222843675 25.31712909252995 24.902533369155055 24.991375309878247 50 24.786078195660885 25.57826244585647 24.71448470624153 24.921174652241113 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 63.0 1 45.5 2 28.0 3 110.0 4 192.0 5 214.5 6 237.0 7 215.0 8 193.0 9 263.5 10 334.0 11 525.0 12 716.0 13 1288.0 14 1860.0 15 2475.5 16 3091.0 17 3299.5 18 3508.0 19 3616.0 20 3724.0 21 4085.5 22 4447.0 23 5155.0 24 5863.0 25 6777.0 26 7691.0 27 9742.0 28 11793.0 29 14194.5 30 16596.0 31 19362.0 32 22128.0 33 26012.0 34 29896.0 35 34888.5 36 39881.0 37 45078.0 38 50275.0 39 53951.5 40 57628.0 41 62247.5 42 66867.0 43 69425.0 44 71983.0 45 78609.5 46 85236.0 47 90384.5 48 95533.0 49 99007.5 50 102482.0 51 99809.5 52 97137.0 53 96501.0 54 95865.0 55 94742.5 56 93620.0 57 90795.0 58 87970.0 59 79603.0 60 71236.0 61 62996.0 62 54756.0 63 47783.0 64 40810.0 65 34391.0 66 27972.0 67 23907.5 68 19843.0 69 17586.0 70 15329.0 71 11798.0 72 8267.0 73 7116.5 74 5966.0 75 4657.0 76 3348.0 77 2863.5 78 2379.0 79 1954.5 80 1530.0 81 1193.0 82 856.0 83 710.0 84 564.0 85 407.0 86 250.0 87 175.0 88 100.0 89 77.5 90 55.0 91 45.0 92 35.0 93 27.5 94 20.0 95 21.0 96 22.0 97 15.0 98 8.0 99 12.0 100 16.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.00908258974400072 2 4.5794570137818754E-4 3 3.052971342521251E-4 4 0.0 5 0.0 6 7.632428356303127E-5 7 1.5264856712606255E-4 8 0.0 9 0.001144864253445469 10 4.5794570137818754E-4 11 0.0 12 7.632428356303127E-5 13 3.8162141781515634E-4 14 1.5264856712606255E-4 15 0.004579457013781876 16 0.0016791342383866879 17 0.0 18 3.052971342521251E-4 19 7.632428356303127E-5 20 6.869185520672813E-4 21 0.0 22 0.0 23 6.105942685042502E-4 24 6.105942685042502E-4 25 0.0021370799397648754 26 0.004961078431597032 27 0.00602961840147947 28 0.0032819441932103446 29 0.0025187013575800315 30 0.004045187028840657 31 0.008090374057681314 32 0.002976647058958219 33 0.003968862745277625 34 0.003129295626084282 35 0.002900322775395188 36 0.008700968326185565 37 0.004274159879529751 38 0.009845832579631033 39 0.004274159879529751 40 0.0024423770740170008 41 0.0035109170438994385 42 0.002289728506890938 43 0.001450161387697594 44 0.0012211885370085004 45 0.0012975128205715315 46 6.869185520672813E-4 47 0.0025187013575800315 48 0.0025187013575800315 49 5.342699849412188E-4 50 0.0018317828055127501 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1310199.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 59.97768233016194 #Duplication Level Percentage of deduplicated Percentage of total 1 78.15920478030733 46.878079554913484 2 13.454978729484314 16.13996879992192 3 4.016697113340372 7.227365504412221 4 1.6101564559713417 3.8629380967243403 5 0.8194841123815583 2.4575378883517915 6 0.4598061062763984 1.65468627454287 7 0.28724382752236227 1.2059753326905251 8 0.21727206842731048 1.042518007948035 9 0.1484995432819186 0.8015992589823344 >10 0.7150666443603173 7.644182193049816 >50 0.05284113997165359 2.216459699960229 >100 0.05286176236410674 6.3485582013400075 >500 0.005375740979732098 2.1879572001132197 >1k 5.119753314030569E-4 0.3321739870492229 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 7.632428356303126E-5 15 0.0 0.0 0.0 7.632428356303126E-5 2.289728506890938E-4 16 0.0 0.0 0.0 7.632428356303126E-5 3.0529713425212504E-4 17 0.0 0.0 0.0 7.632428356303126E-5 3.0529713425212504E-4 18 0.0 0.0 0.0 7.632428356303126E-5 3.0529713425212504E-4 19 0.0 0.0 0.0 7.632428356303126E-5 3.0529713425212504E-4 20 0.0 0.0 0.0 2.289728506890938E-4 3.0529713425212504E-4 21 0.0 0.0 0.0 3.0529713425212504E-4 3.0529713425212504E-4 22 0.0 0.0 0.0 3.0529713425212504E-4 3.0529713425212504E-4 23 0.0 0.0 0.0 0.0010685399698824377 3.0529713425212504E-4 24 0.0 0.0 0.0 0.002060755656201844 3.0529713425212504E-4 25 0.0 0.0 0.0 0.0022134042233279065 3.0529713425212504E-4 26 0.0 0.0 0.0 0.002823998491832157 3.0529713425212504E-4 27 0.0 0.0 0.0 0.0033582684767733757 3.0529713425212504E-4 28 0.0 0.0 0.0 0.005037402715160064 3.0529713425212504E-4 29 0.0 0.0 0.0 0.008395671191933438 3.0529713425212504E-4 30 0.0 0.0 0.0 0.015875450981110505 3.0529713425212504E-4 31 0.0 0.0 0.0 0.036177710408876816 3.0529713425212504E-4 32 0.0 0.0 0.0 0.05617467270239101 3.0529713425212504E-4 33 0.0 0.0 0.0 0.07510309502602276 3.0529713425212504E-4 34 0.0 0.0 0.0 0.09807670437849518 5.342699849412188E-4 35 0.0 0.0 0.0 0.12509550075980824 5.342699849412188E-4 36 0.0 0.0 0.0 0.1650131010632736 5.342699849412188E-4 37 0.0 0.0 0.0 0.2211877737656646 5.342699849412188E-4 38 0.0 0.0 0.0 0.29957281298489774 5.342699849412188E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATTTCG 255 0.0 24.157072 41 GTATCAA 2480 0.0 21.64535 1 CGGATAT 55 0.0044865552 19.997883 17 ATTTCGT 280 0.0 19.643778 42 GTATAGA 180 0.0 19.555725 1 GTATAAT 190 1.8189894E-12 18.526476 1 ATAGTAC 85 1.432109E-4 18.115728 3 GTATTAC 195 1.8189894E-12 18.05144 1 CCTAATA 110 2.7996157E-6 17.998095 2 GTGTAAT 270 0.0 17.92608 1 TAGGACG 435 0.0 17.699276 4 AATCACG 300 0.0 17.602167 34 GGGTATA 75 0.0012908734 17.600153 1 TATTAGG 125 4.85863E-7 17.598137 2 AACGCAG 3020 0.0 17.554434 6 CGGTCCG 190 3.274181E-11 17.367908 39 TGTAATA 245 0.0 17.05942 2 GTATTAG 220 1.8189894E-12 17.000149 1 ACCGTCG 275 0.0 16.798222 8 TCACGGA 315 0.0 16.76397 36 >>END_MODULE