##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063960_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1909587 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.34350883201446 32.0 32.0 32.0 32.0 32.0 2 31.437088229025438 32.0 32.0 32.0 32.0 32.0 3 31.505870641138635 32.0 32.0 32.0 32.0 32.0 4 31.578367468986748 32.0 32.0 32.0 32.0 32.0 5 31.54698424318976 32.0 32.0 32.0 32.0 32.0 6 35.13242549305164 36.0 36.0 36.0 36.0 36.0 7 35.15168515495759 36.0 36.0 36.0 36.0 36.0 8 35.097160799691245 36.0 36.0 36.0 36.0 36.0 9 35.21186465974056 36.0 36.0 36.0 36.0 36.0 10 35.064793067820425 36.0 36.0 36.0 36.0 36.0 11 35.20970345943913 36.0 36.0 36.0 36.0 36.0 12 35.11718083543719 36.0 36.0 36.0 36.0 36.0 13 35.15609134331141 36.0 36.0 36.0 36.0 36.0 14 35.10189428394726 36.0 36.0 36.0 36.0 36.0 15 35.07108709893815 36.0 36.0 36.0 36.0 36.0 16 35.08712145610543 36.0 36.0 36.0 36.0 36.0 17 35.05310258186718 36.0 36.0 36.0 36.0 36.0 18 35.05259409495351 36.0 36.0 36.0 36.0 36.0 19 35.05006265752752 36.0 36.0 36.0 36.0 36.0 20 35.0450500553261 36.0 36.0 36.0 36.0 36.0 21 35.03833080137223 36.0 36.0 36.0 36.0 36.0 22 35.01943718720331 36.0 36.0 36.0 36.0 36.0 23 34.96602773269822 36.0 36.0 36.0 36.0 36.0 24 34.946016599400814 36.0 36.0 36.0 36.0 36.0 25 34.92111592716121 36.0 36.0 36.0 36.0 36.0 26 34.86305206309008 36.0 36.0 36.0 32.0 36.0 27 34.85966284856359 36.0 36.0 36.0 32.0 36.0 28 34.836528526849 36.0 36.0 36.0 32.0 36.0 29 34.80163145224596 36.0 36.0 36.0 32.0 36.0 30 34.78524256815741 36.0 36.0 36.0 32.0 36.0 31 34.77765611098106 36.0 36.0 36.0 32.0 36.0 32 34.74076174586442 36.0 36.0 36.0 32.0 36.0 33 34.71061857878169 36.0 36.0 36.0 32.0 36.0 34 34.702798039576095 36.0 36.0 36.0 32.0 36.0 35 34.662263096680064 36.0 36.0 36.0 32.0 36.0 36 34.638733401515616 36.0 36.0 36.0 32.0 36.0 37 34.63263365324544 36.0 36.0 36.0 32.0 36.0 38 34.596786635015846 36.0 36.0 36.0 32.0 36.0 39 34.596574023597775 36.0 36.0 36.0 32.0 36.0 40 34.58663313061934 36.0 36.0 36.0 32.0 36.0 41 34.57225829459459 36.0 36.0 36.0 32.0 36.0 42 34.51578639779177 36.0 36.0 36.0 32.0 36.0 43 34.503826220015114 36.0 36.0 36.0 32.0 36.0 44 34.4475601268756 36.0 36.0 36.0 32.0 36.0 45 34.417744779368526 36.0 36.0 36.0 32.0 36.0 46 34.39161190351631 36.0 36.0 36.0 32.0 36.0 47 34.37006588335593 36.0 36.0 36.0 32.0 36.0 48 34.32375272768405 36.0 36.0 36.0 32.0 36.0 49 34.30293147156951 36.0 36.0 36.0 32.0 36.0 50 33.72326057938182 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 8.0 20 26.0 21 50.0 22 206.0 23 562.0 24 1441.0 25 3349.0 26 6680.0 27 12205.0 28 20542.0 29 31431.0 30 45708.0 31 64824.0 32 94506.0 33 151410.0 34 320668.0 35 1155967.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.58499518700501 17.932988864646433 11.953562716100333 26.528453232248218 2 15.889217408244125 20.433153293554913 37.40601326575819 26.27161603244277 3 18.11735367709515 24.446710215555477 28.933670161679704 28.50226594566967 4 12.302398372004 16.293261317761377 36.03925875071416 35.36508155952046 5 14.185266238197055 37.0620977206066 33.532957650004946 15.219678391191394 6 34.01065256518818 35.85880088207555 16.916537450244476 13.214009102491794 7 30.096481847859895 30.57182147716097 20.85603027259369 18.475666402385443 8 27.994811440804447 33.27517063908093 19.338851457855263 19.39116646225936 9 27.711832054072993 13.948816668909759 18.213972068013323 40.125379209003924 10 15.789539833093139 26.918077806079697 31.792635821295708 25.499746539531454 11 37.188374862404736 20.81000803315483 22.744982420273292 19.256634684167146 12 24.88494876370979 23.511508265674617 29.02841666038258 22.575126310233014 13 29.828940994723958 19.5990730921802 25.094955683856355 25.47703022923949 14 23.71769124463299 19.589617209621156 25.3171503935676 31.37554115217825 15 25.178214565518857 27.351353446144948 22.171033613058107 25.29939837527808 16 25.61704797295316 25.673552662999533 23.960764064902364 24.74863529914494 17 24.102541544323458 25.92759586235139 25.126532595791655 24.8433299975335 18 24.68239155753295 24.996334280136406 26.2863011001349 24.034973062195743 19 25.780810196131416 24.70534204516474 25.23655638627619 24.27729137242765 20 26.063336473641574 24.35756781992261 24.890879089055755 24.68821661738006 21 26.939332955241106 24.062532893238174 24.262680883353312 24.735453268167408 22 26.012301102071916 24.369012115197805 24.83173045452284 24.786956328207438 23 24.793068596595045 24.252266217001733 25.243012824876804 25.711652361526415 24 25.095112786876662 24.7781836272469 25.086472120759858 25.040231465116587 25 25.149708124798053 24.419535712359306 25.287018034101244 25.143738128741393 26 24.75341531700154 25.14032572116266 25.5883520486665 24.517906913169305 27 25.360716977199328 24.76499912802618 24.815798803955673 25.05848509081882 28 24.76750482586559 24.71927235478151 25.4352181877788 25.078004631574096 29 24.833440689593775 24.69817180143805 25.17787099443318 25.29051651453499 30 24.749543076496064 24.992432613602443 25.383475341841628 24.874548968059866 31 25.423358661969285 24.59295508142993 24.64621696597891 25.33746929062188 32 24.997302989962932 24.91236026607706 24.682721644474377 25.407615099485632 33 24.75275005826117 24.521800152395514 25.190245639576748 25.53520414976656 34 25.276154197025342 24.63468778459213 25.39518866150903 24.693969356873495 35 25.63399208285612 24.671711895144714 25.145232300983437 24.549063721015727 36 24.742356587490875 25.05297414610285 25.052240939928417 25.152428326477853 37 25.46782821816011 24.82766566379421 24.791897418978117 24.912608699067565 38 24.952263540866912 24.830971561325246 25.11770454405004 25.099060353757803 39 25.435978004713277 24.533438072793924 24.736370777690496 25.294213144802303 40 25.789117577131222 24.702310192308296 25.054646726066725 24.453925504493757 41 24.879995894251845 24.94797116340354 25.463074974941318 24.708957967403293 42 25.724139989662437 25.213860294175404 24.78789405412086 24.274105662041297 43 24.980780792103683 24.498415331795798 25.296824169908273 25.22397970619225 44 24.804522929116093 25.003574123658918 24.79546324570228 25.396439701522706 45 24.90441500306092 25.196053325457164 24.88488167674492 25.014649994737 46 24.832252020228733 24.678604139904408 24.978411268349113 25.510732571517746 47 25.07429795956201 24.642361698439572 25.27717393865856 25.006166403339858 48 25.430036998342537 25.09325519953706 24.504004880743842 24.97270292137656 49 25.029417509741688 25.2012356663282 24.580522283207223 25.188824540722894 50 24.93963291154487 25.48164060229361 24.5480258089923 25.03070067716922 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 30.0 1 38.0 2 46.0 3 93.0 4 140.0 5 179.5 6 219.0 7 215.0 8 211.0 9 292.5 10 374.0 11 535.5 12 697.0 13 1369.5 14 2042.0 15 2760.0 16 3478.0 17 3789.0 18 4100.0 19 4192.5 20 4285.0 21 4911.5 22 5538.0 23 6437.5 24 7337.0 25 8934.5 26 10532.0 27 13827.0 28 17122.0 29 20651.5 30 24181.0 31 27613.0 32 31045.0 33 36916.5 34 42788.0 35 49704.5 36 56621.0 37 64660.5 38 72700.0 39 78244.0 40 83788.0 41 90354.0 42 96920.0 43 100339.5 44 103759.0 45 113698.0 46 123637.0 47 131545.5 48 139454.0 49 144140.5 50 148827.0 51 146136.5 52 143446.0 53 141923.5 54 140401.0 55 139269.0 56 138137.0 57 133329.0 58 128521.0 59 117329.0 60 106137.0 61 93130.0 62 80123.0 63 69791.5 64 59460.0 65 50110.5 66 40761.0 67 35176.0 68 29591.0 69 26688.0 70 23785.0 71 18752.0 72 13719.0 73 11751.5 74 9784.0 75 7679.0 76 5574.0 77 4834.0 78 4094.0 79 3416.5 80 2739.0 81 2153.5 82 1568.0 83 1281.5 84 995.0 85 712.0 86 429.0 87 303.0 88 177.0 89 139.5 90 102.0 91 83.5 92 65.0 93 47.5 94 30.0 95 35.5 96 41.0 97 35.0 98 29.0 99 18.5 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.009059550572977299 2 4.713060991722294E-4 3 4.713060991722294E-4 4 0.0 5 0.0 6 0.0 7 2.6183672176234964E-4 8 5.236734435246993E-5 9 0.0010473468870493986 10 9.949795426969286E-4 11 5.236734435246993E-5 12 1.5710203305740978E-4 13 6.284081322296391E-4 14 2.094693774098797E-4 15 0.004765428336074764 16 5.760407878771693E-4 17 0.0 18 1.5710203305740978E-4 19 0.0 20 4.189387548197594E-4 21 0.0 22 1.0473468870493986E-4 23 8.902448539919888E-4 24 6.284081322296391E-4 25 0.0019899590853938573 26 0.005289101779599463 27 0.006598285388411212 28 0.004451224269959944 29 0.0029849386280907863 30 0.004032285515140185 31 0.00806457103028037 32 0.0034038773829105457 33 0.004294122236902534 34 0.002932571283738316 35 0.003142040661148196 36 0.00864061181815754 37 0.0037704487933778352 38 0.00759326493110814 39 0.004555958958664884 40 0.0025659998732710265 41 0.0036133467603204255 42 0.0024088978402136167 43 0.002042326429746327 44 0.001466285641869158 45 0.001571020330574098 46 0.0013615509531642183 47 0.0024088978402136167 48 0.0021994284628037374 49 5.236734435246993E-4 50 0.0010473468870493986 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1909587.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 59.098806145266316 #Duplication Level Percentage of deduplicated Percentage of total 1 79.63411328477171 47.06281023566901 2 12.415922459232567 14.675323890656875 3 3.5484720469205624 6.291313848385641 4 1.459849095363675 3.4510135475296093 5 0.760195447431885 2.2463321690145484 6 0.4909172957641849 1.7407575657435563 7 0.30374899013129963 1.2565841879213062 8 0.22082320448989703 1.0440310203619942 9 0.17333360707344658 0.9219428318604044 >10 0.8757448960949176 9.068640802470114 >50 0.059033345135883354 2.429357174470883 >100 0.05060544574647466 6.282072214768649 >500 0.0055424033863908945 2.2592457320128116 >1k 0.0016984784571197902 1.2705747791345086 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.0473468870493987E-4 2 0.0 0.0 0.0 0.0 1.0473468870493987E-4 3 0.0 0.0 0.0 0.0 1.0473468870493987E-4 4 0.0 0.0 0.0 0.0 1.0473468870493987E-4 5 0.0 0.0 0.0 0.0 1.0473468870493987E-4 6 0.0 0.0 0.0 0.0 1.5710203305740978E-4 7 0.0 0.0 0.0 0.0 1.5710203305740978E-4 8 0.0 0.0 0.0 0.0 2.0946937740987974E-4 9 0.0 0.0 0.0 0.0 2.0946937740987974E-4 10 0.0 0.0 0.0 5.2367344352469935E-5 2.0946937740987974E-4 11 0.0 0.0 0.0 5.2367344352469935E-5 2.0946937740987974E-4 12 0.0 0.0 0.0 5.2367344352469935E-5 4.713060991722294E-4 13 0.0 0.0 0.0 5.2367344352469935E-5 5.236734435246993E-4 14 0.0 0.0 0.0 5.2367344352469935E-5 5.236734435246993E-4 15 0.0 0.0 0.0 5.2367344352469935E-5 5.760407878771692E-4 16 0.0 0.0 0.0 1.0473468870493987E-4 6.284081322296391E-4 17 0.0 0.0 0.0 1.0473468870493987E-4 6.807754765821091E-4 18 0.0 0.0 0.0 1.5710203305740978E-4 6.807754765821091E-4 19 0.0 0.0 0.0 1.5710203305740978E-4 6.807754765821091E-4 20 0.0 0.0 0.0 1.5710203305740978E-4 8.37877509639519E-4 21 0.0 0.0 0.0 1.5710203305740978E-4 9.949795426969286E-4 22 0.0 0.0 0.0 3.1420406611481957E-4 0.0010473468870493986 23 0.0 0.0 0.0 5.760407878771692E-4 0.0010473468870493986 24 0.0 0.0 0.0 8.902448539919889E-4 0.0010473468870493986 25 0.0 0.0 0.0 0.0014662856418691582 0.0010473468870493986 26 0.0 0.0 0.0 0.0017281223636315078 0.0010473468870493986 27 0.0 0.0 0.0 0.0024612651845660866 0.0010473468870493986 28 0.0 0.0 0.0 0.004032285515140185 0.0010473468870493986 29 0.0 0.0 0.0 0.0068077547658210915 0.0010473468870493986 30 0.0 0.0 0.0 0.013091836088117483 0.0010473468870493986 31 0.0 0.0 0.0 0.02953518221479304 0.0010997142314018685 32 0.0 0.0 0.0 0.04812558945991987 0.0011520815757543384 33 0.0 0.0 0.0 0.06703020077116151 0.0011520815757543384 34 0.0 0.0 0.0 0.08918158743225629 0.0013615509531642181 35 0.0 0.0 0.0 0.11248505566910541 0.0013615509531642181 36 0.0 0.0 0.0 0.14568595198857134 0.0013615509531642181 37 0.0 0.0 0.0 0.20020035745949255 0.0013615509531642181 38 0.0 0.0 0.0 0.27246729266590103 0.0014139182975166883 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 2970 0.0 22.516308 1 TAGGACG 555 0.0 18.231487 4 AACGCAG 3860 0.0 17.323814 6 ATACCGT 555 0.0 17.042479 6 GTAGGAC 740 0.0 16.943394 3 TGTAGGA 820 0.0 16.631641 2 ATTGCGA 120 6.413238E-6 16.499245 10 ATTTCGT 295 0.0 16.408175 42 GGTATCA 1580 0.0 16.011086 1 TACCGTC 550 0.0 15.998011 7 ACCGTCG 525 0.0 15.921828 8 CCGTCGT 535 0.0 15.625451 9 TATAACG 85 0.0029837799 15.527073 2 TCAACGC 4315 0.0 15.446109 4 TATCAAC 4400 0.0 15.397681 2 TACACCG 100 4.9512216E-4 15.39768 5 AGGACGT 615 0.0 15.379799 5 ATCAACG 4330 0.0 15.341801 3 GGCGTTA 475 0.0 15.285511 42 CAACGCA 4365 0.0 15.269178 5 >>END_MODULE