##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063946_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 772760 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.37941016615767 32.0 32.0 32.0 32.0 32.0 2 31.47262151250065 32.0 32.0 32.0 32.0 32.0 3 31.50872845385372 32.0 32.0 32.0 32.0 32.0 4 31.57365417464672 32.0 32.0 32.0 32.0 32.0 5 31.548225839846783 32.0 32.0 32.0 32.0 32.0 6 35.13122314819608 36.0 36.0 36.0 36.0 36.0 7 35.14011465396759 36.0 36.0 36.0 36.0 36.0 8 35.09752963403903 36.0 36.0 36.0 36.0 36.0 9 35.18106009627827 36.0 36.0 36.0 36.0 36.0 10 35.06766395776179 36.0 36.0 36.0 36.0 36.0 11 35.18287825456804 36.0 36.0 36.0 36.0 36.0 12 35.111808323412184 36.0 36.0 36.0 36.0 36.0 13 35.13090998498887 36.0 36.0 36.0 36.0 36.0 14 35.08229722035302 36.0 36.0 36.0 36.0 36.0 15 35.066425539624205 36.0 36.0 36.0 36.0 36.0 16 35.07844997153062 36.0 36.0 36.0 36.0 36.0 17 35.06112894042135 36.0 36.0 36.0 36.0 36.0 18 35.04693954138413 36.0 36.0 36.0 36.0 36.0 19 35.049488845178324 36.0 36.0 36.0 36.0 36.0 20 35.03053858895388 36.0 36.0 36.0 36.0 36.0 21 35.019650344220715 36.0 36.0 36.0 36.0 36.0 22 35.013539779491694 36.0 36.0 36.0 36.0 36.0 23 34.97127439308453 36.0 36.0 36.0 36.0 36.0 24 34.949556136445985 36.0 36.0 36.0 36.0 36.0 25 34.92153967596666 36.0 36.0 36.0 36.0 36.0 26 34.86254982141933 36.0 36.0 36.0 32.0 36.0 27 34.86492442673016 36.0 36.0 36.0 32.0 36.0 28 34.835182980485534 36.0 36.0 36.0 32.0 36.0 29 34.82005797401522 36.0 36.0 36.0 32.0 36.0 30 34.808292354676745 36.0 36.0 36.0 32.0 36.0 31 34.800952430250014 36.0 36.0 36.0 32.0 36.0 32 34.769649050157874 36.0 36.0 36.0 32.0 36.0 33 34.753272684921576 36.0 36.0 36.0 32.0 36.0 34 34.73671903307625 36.0 36.0 36.0 32.0 36.0 35 34.7109154200528 36.0 36.0 36.0 32.0 36.0 36 34.697894559759824 36.0 36.0 36.0 32.0 36.0 37 34.67402168849319 36.0 36.0 36.0 32.0 36.0 38 34.65047492106217 36.0 36.0 36.0 32.0 36.0 39 34.637443708266474 36.0 36.0 36.0 32.0 36.0 40 34.62272633159066 36.0 36.0 36.0 32.0 36.0 41 34.60129794502821 36.0 36.0 36.0 32.0 36.0 42 34.56050779025829 36.0 36.0 36.0 32.0 36.0 43 34.554855323774525 36.0 36.0 36.0 32.0 36.0 44 34.51304415342409 36.0 36.0 36.0 32.0 36.0 45 34.47117086805735 36.0 36.0 36.0 32.0 36.0 46 34.44566877167555 36.0 36.0 36.0 32.0 36.0 47 34.42852632123816 36.0 36.0 36.0 32.0 36.0 48 34.38693643563332 36.0 36.0 36.0 32.0 36.0 49 34.3587439826078 36.0 36.0 36.0 32.0 36.0 50 33.78561002122263 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 4.0 20 3.0 21 22.0 22 78.0 23 187.0 24 574.0 25 1253.0 26 2682.0 27 5001.0 28 8271.0 29 13051.0 30 18964.0 31 26663.0 32 37678.0 33 58528.0 34 121626.0 35 478172.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.4409763698413 18.67104784657415 12.689546641059454 26.198429142525097 2 15.401498014897328 20.6396326913023 38.15848728447272 25.800382009327656 3 18.61290915349516 23.96144180424818 29.10874612101652 28.316902921240132 4 12.714685025104819 16.752419897510222 35.818494746104875 34.71440033128009 5 14.300300222578807 36.69172835032869 33.93369222009421 15.074279206998293 6 33.85462498058906 35.79209586417517 16.85141570474662 13.501863450489154 7 29.52447011293301 30.936553310928762 20.776593996317093 18.762382579821136 8 27.08784098555826 34.6245923702055 19.352709767586315 18.93485687664993 9 27.12057860961321 14.944956253582989 18.99025427402688 38.94421086277692 10 15.92735517233347 27.723081064153032 32.16697336511609 24.1825903983974 11 36.33379056887002 21.87017961592215 22.77667063512604 19.019359180081786 12 24.187975568093588 24.183834567006574 29.49272736684093 22.135462498058907 13 29.475045033853036 20.789075926040955 25.115431600306437 24.620447439799573 14 23.31237374750407 19.832366448961317 25.77162031531258 31.083639488222044 15 24.619171423653754 27.87298941535324 22.72910214915306 24.77873701183995 16 24.6751246832773 26.86080247632506 24.371277942124184 24.092794898273457 17 23.591542005279777 26.467855479062063 25.908949738599308 24.031652777058852 18 23.69567664867481 26.61858773197784 26.661291971473567 23.02444364787378 19 25.27084735234743 25.654795796883896 25.559811584450543 23.51454526631813 20 25.450529143664642 25.38453176803087 25.544607755597482 23.620331332707007 21 25.755473885811895 25.42561726797453 25.152311196231693 23.66659764998188 22 25.32380729308879 25.39407499621486 25.57175005402719 23.710367656669156 23 24.524168167795104 25.560982048574445 25.773469366627328 24.141380417003127 24 24.585575303005598 25.532055313565177 25.674273187725007 24.20809619570422 25 24.559945958956757 25.210353725545005 25.87797283971706 24.351727475781175 26 24.163969515832846 26.065153501421584 26.11911808667722 23.65175889606835 27 24.497645303354034 25.63895169086502 25.973746976553976 23.88965602922697 28 24.166887742887276 25.841718053407703 25.888176412353523 24.103217791351497 29 24.182648756373425 25.755105210031836 25.513238605481792 24.549007428112947 30 24.33935698275728 25.800277457126146 25.7157720917472 24.14459346836937 31 24.499837582292717 25.584477267344724 25.517957186433527 24.397727963929032 32 24.24269090607918 26.03605888686434 25.693250993871132 24.027999213185357 33 24.0921367479336 25.767644466760963 25.98001089655904 24.160207888746392 34 24.721378175098224 25.529032057686234 26.054958252020104 23.694631515195436 35 24.654345080337915 25.431971591850257 26.043823505052178 23.869859822759647 36 24.260714942034873 25.640411747805764 25.869735708018315 24.229137602141044 37 24.67271795508898 25.516999513412227 25.395352569079936 24.414929962418856 38 24.38446117947915 25.857224759511166 25.522941075220945 24.235372985788736 39 24.53062154145594 25.397295800311625 25.646673327087033 24.425409331145403 40 25.266390419521233 25.39851799704428 25.549410019955015 23.78568156347947 41 24.355435462017184 24.99912647480171 26.545719014767105 24.099719048414002 42 24.693462121300357 25.51689242089543 25.969047924083426 23.820597533720782 43 23.982327911960493 24.828921350408415 26.536990258093233 24.651760479537856 44 23.836526901938658 25.280588443107803 26.157843859147384 24.72504079580615 45 24.168520438072388 25.348851955809714 25.83633236665463 24.646295239463267 46 24.219930844565916 24.965318756858604 25.97935689587345 24.83539350270203 47 23.999534125320288 25.384346610761703 26.082123353262414 24.53399591065559 48 23.948459198159295 25.23943800493564 26.03439418076033 24.777708616144743 49 23.87995191243819 25.045518837098857 26.148970504311187 24.925558746151765 50 23.914596365725703 25.740662617081245 25.875763826521762 24.468977190671286 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2.0 1 7.0 2 12.0 3 35.0 4 58.0 5 80.5 6 103.0 7 96.5 8 90.0 9 149.0 10 208.0 11 296.0 12 384.0 13 633.5 14 883.0 15 1206.0 16 1529.0 17 1554.0 18 1579.0 19 1582.5 20 1586.0 21 1918.0 22 2250.0 23 2792.0 24 3334.0 25 4264.0 26 5194.0 27 6811.0 28 8428.0 29 10194.0 30 11960.0 31 13917.0 32 15874.0 33 18576.0 34 21278.0 35 25186.5 36 29095.0 37 31728.5 38 34362.0 39 36856.5 40 39351.0 41 42080.0 42 44809.0 43 46516.0 44 48223.0 45 49638.5 46 51054.0 47 52554.0 48 54054.0 49 55745.0 50 57436.0 51 56837.0 52 56238.0 53 56301.0 54 56364.0 55 55248.5 56 54133.0 57 50059.5 58 45986.0 59 42589.5 60 39193.0 61 33731.5 62 28270.0 63 24143.0 64 20016.0 65 16715.5 66 13415.0 67 11619.0 68 9823.0 69 7971.0 70 6119.0 71 4845.5 72 3572.0 73 3021.0 74 2470.0 75 1985.0 76 1500.0 77 1231.0 78 962.0 79 841.0 80 720.0 81 547.0 82 374.0 83 296.0 84 218.0 85 173.0 86 128.0 87 92.5 88 57.0 89 47.0 90 37.0 91 24.5 92 12.0 93 10.5 94 9.0 95 6.5 96 4.0 97 3.5 98 3.0 99 2.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.007893783322118122 2 5.176251358765982E-4 3 7.764377038148974E-4 4 0.0 5 0.0 6 0.0 7 1.2940628396914956E-4 8 0.0 9 0.001423469123660645 10 0.0018116879755680937 11 0.0 12 0.0 13 0.0010352502717531965 14 3.882188519074487E-4 15 0.004788032506858534 16 2.588125679382991E-4 17 0.0 18 3.882188519074487E-4 19 0.0 20 2.588125679382991E-4 21 0.0 22 1.2940628396914956E-4 23 0.0010352502717531965 24 2.588125679382991E-4 25 0.0018116879755680937 26 0.004011594803043636 27 0.006340907914488328 28 0.0032351570992287383 29 0.002588125679382991 30 0.0036233759511361875 31 0.007893783322118122 32 0.0031057508152595894 33 0.005046845074796832 34 0.0036233759511361875 35 0.0031057508152595894 36 0.0069879393343340755 37 0.004141001087012786 38 0.008152595890056421 39 0.004658626222889384 40 0.00284693824732129 41 0.0037527822351053363 42 0.0021999068274755423 43 0.002070500543506393 44 0.001164656555722346 45 0.001423469123660645 46 0.0010352502717531965 47 0.002588125679382991 48 0.001682281691598944 49 3.882188519074487E-4 50 7.764377038148974E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 772760.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.12215619090637 #Duplication Level Percentage of deduplicated Percentage of total 1 61.70520852213763 27.225668482062034 2 15.837801760264858 13.975959259740357 3 7.926768644575832 10.49238372675462 4 4.507402539512586 7.955052754546492 5 2.8045108685994466 6.187053329171962 6 1.8383257068121162 4.866653637943353 7 1.2165561639710296 3.757395675721776 8 0.9147801141988229 3.22896568632125 9 0.6849346913855381 2.7198715890494665 >10 2.499180963676523 16.80737698457035 >50 0.04626140398758247 1.4106020973102467 >100 0.018268620877989618 1.373016776808118 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 3.882188519074486E-4 7 0.0 0.0 0.0 0.0 3.882188519074486E-4 8 0.0 0.0 0.0 0.0 3.882188519074486E-4 9 0.0 0.0 0.0 0.0 3.882188519074486E-4 10 0.0 0.0 0.0 0.0 3.882188519074486E-4 11 0.0 0.0 0.0 0.0 3.882188519074486E-4 12 0.0 0.0 0.0 0.0 3.882188519074486E-4 13 0.0 0.0 0.0 1.2940628396914953E-4 3.882188519074486E-4 14 0.0 0.0 0.0 1.2940628396914953E-4 7.764377038148973E-4 15 0.0 0.0 0.0 1.2940628396914953E-4 9.058439877840468E-4 16 0.0 0.0 0.0 1.2940628396914953E-4 0.0010352502717531963 17 0.0 0.0 0.0 1.2940628396914953E-4 0.0010352502717531963 18 0.0 0.0 0.0 1.2940628396914953E-4 0.0010352502717531963 19 0.0 0.0 0.0 1.2940628396914953E-4 0.0010352502717531963 20 0.0 0.0 0.0 1.2940628396914953E-4 0.0010352502717531963 21 0.0 0.0 0.0 1.2940628396914953E-4 0.0010352502717531963 22 0.0 0.0 0.0 2.5881256793829907E-4 0.0011646565557223458 23 0.0 0.0 0.0 2.5881256793829907E-4 0.0011646565557223458 24 0.0 0.0 0.0 5.176251358765981E-4 0.001423469123660645 25 0.0 0.0 0.0 6.470314198457477E-4 0.001423469123660645 26 0.0 0.0 0.0 6.470314198457477E-4 0.001423469123660645 27 0.0 0.0 0.0 0.0011646565557223458 0.001423469123660645 28 0.0 0.0 0.0 0.0054350639267042805 0.001423469123660645 29 0.0 0.0 0.0 0.015269941508359646 0.0015528754076297945 30 0.0 0.0 0.0 0.030022257880842694 0.0015528754076297945 31 0.0 0.0 0.0 0.06586779854029712 0.001682281691598944 32 0.0 0.0 0.0 0.10740721569439413 0.0021999068274755423 33 0.0 0.0 0.0 0.14804078886070707 0.0021999068274755423 34 0.0 0.0 0.0 0.19605052021326155 0.0021999068274755423 35 0.0 0.0 0.0 0.2558362234070086 0.0021999068274755423 36 0.0 0.0 0.0 0.33580930689994304 0.0021999068274755423 37 0.0 0.0 0.0 0.4649567783011543 0.0021999068274755423 38 0.0 0.0 0.0 0.6527252963403903 0.0021999068274755423 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 425 0.0 28.98653 1 GTATCAA 1065 0.0 26.43976 1 CCCTATA 50 8.348288E-5 26.395031 2 GATATAC 220 0.0 21.998707 1 TATCAAC 1440 0.0 19.246378 2 TAGGACG 310 0.0 19.160164 4 GTATTAC 70 8.122913E-4 18.856033 1 ATCAACG 1485 0.0 18.66436 3 GTACTAG 95 1.5967033E-5 18.525227 1 CCTATAC 60 0.0074150236 18.33107 3 TCAACGC 1525 0.0 18.320234 4 CAACGCA 1515 0.0 18.295954 5 TTAGGAC 255 0.0 18.115408 3 ATACACT 370 0.0 17.836788 4 AACGCAG 1560 0.0 17.768185 6 GACGTGA 225 0.0 17.598965 7 TAAACTA 75 0.0012908078 17.598965 5 GTAGAAC 390 0.0 17.485018 3 GTCCTAC 240 0.0 17.415642 1 GTCCTAA 240 0.0 17.415642 1 >>END_MODULE