##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063945_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1299551 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.12775104632292 32.0 32.0 32.0 32.0 32.0 2 30.94610600122658 32.0 32.0 32.0 32.0 32.0 3 31.212695000042324 32.0 32.0 32.0 32.0 32.0 4 31.384645927708878 32.0 32.0 32.0 32.0 32.0 5 31.239159525097513 32.0 32.0 32.0 32.0 32.0 6 34.83934066458338 36.0 36.0 36.0 32.0 36.0 7 34.880368681182965 36.0 36.0 36.0 32.0 36.0 8 34.794151980183926 36.0 36.0 36.0 32.0 36.0 9 34.98761957014384 36.0 36.0 36.0 36.0 36.0 10 34.73532089160025 36.0 36.0 36.0 32.0 36.0 11 34.99708668609389 36.0 36.0 36.0 36.0 36.0 12 34.853022313091216 36.0 36.0 36.0 32.0 36.0 13 34.929568751053246 36.0 36.0 36.0 32.0 36.0 14 34.86507570691724 36.0 36.0 36.0 32.0 36.0 15 34.79306545106733 36.0 36.0 36.0 32.0 36.0 16 34.8157986873928 36.0 36.0 36.0 32.0 36.0 17 34.78000555576503 36.0 36.0 36.0 32.0 36.0 18 34.78146221271808 36.0 36.0 36.0 32.0 36.0 19 34.784626382496725 36.0 36.0 36.0 32.0 36.0 20 34.78428164804613 36.0 36.0 36.0 32.0 36.0 21 34.7749222616119 36.0 36.0 36.0 32.0 36.0 22 34.76180080658627 36.0 36.0 36.0 32.0 36.0 23 34.69573798950561 36.0 36.0 36.0 32.0 36.0 24 34.66827773592571 36.0 36.0 36.0 32.0 36.0 25 34.62794611369619 36.0 36.0 36.0 32.0 36.0 26 34.56059131192235 36.0 36.0 36.0 32.0 36.0 27 34.563153735405535 36.0 36.0 36.0 32.0 36.0 28 34.53384976811222 36.0 36.0 36.0 32.0 36.0 29 34.50448885807483 36.0 36.0 36.0 32.0 36.0 30 34.47467702306412 36.0 36.0 36.0 32.0 36.0 31 34.47231082119902 36.0 36.0 36.0 32.0 36.0 32 34.429742272523356 36.0 36.0 36.0 32.0 36.0 33 34.406858214875754 36.0 36.0 36.0 32.0 36.0 34 34.388898935093735 36.0 36.0 36.0 32.0 36.0 35 34.35708794806822 36.0 36.0 36.0 32.0 36.0 36 34.31860850401408 36.0 36.0 36.0 32.0 36.0 37 34.31298425379227 36.0 36.0 36.0 32.0 36.0 38 34.27439554122924 36.0 36.0 36.0 32.0 36.0 39 34.271391426731235 36.0 36.0 36.0 32.0 36.0 40 34.25216940312462 36.0 36.0 36.0 32.0 36.0 41 34.22854047282485 36.0 36.0 36.0 32.0 36.0 42 34.152720439597985 36.0 36.0 36.0 32.0 36.0 43 34.15177626734157 36.0 36.0 36.0 32.0 36.0 44 34.07975985551933 36.0 36.0 36.0 32.0 36.0 45 34.040907975139106 36.0 36.0 36.0 32.0 36.0 46 34.03707434336936 36.0 36.0 36.0 32.0 36.0 47 34.00830671516547 36.0 36.0 36.0 32.0 36.0 48 33.95886733187078 36.0 36.0 36.0 32.0 36.0 49 33.94168986057492 36.0 36.0 36.0 32.0 36.0 50 33.2233271337562 36.0 36.0 36.0 21.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 0.0 19 2.0 20 9.0 21 40.0 22 128.0 23 368.0 24 990.0 25 2373.0 26 4922.0 27 9207.0 28 15650.0 29 25139.0 30 38350.0 31 58330.0 32 88922.0 33 149591.0 34 294838.0 35 610689.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.03759088362587 18.45991885885257 12.019494191451246 26.48299606607032 2 16.1256712905785 20.488877295123153 36.50805010045793 26.877401313840416 3 18.195634174343695 24.28036517312173 28.940370036351098 28.583630616183477 4 12.390664160159933 15.9431988432928 36.31692792356745 35.34920907297982 5 14.437909708814814 36.78785980696409 33.283572556983145 15.490657927237947 6 34.508022007618024 36.06756184833211 16.288715324535417 13.135700819514447 7 30.222230772190372 30.533338463314223 20.78319418260167 18.461236581893733 8 28.176116212445685 33.159529714493694 19.00933476254491 19.65501931051571 9 27.24920144759026 13.908393668831792 18.081334996487218 40.76106988709073 10 15.268556566169567 26.937839543222985 32.0200994197947 25.773504470812746 11 37.722413356613174 20.902373204283634 22.314553257240384 19.06066018186281 12 24.537589579153998 23.57233163197386 28.953275328594767 22.93680346027737 13 29.549020467870008 19.392650835020454 25.20135831738549 25.856970379724043 14 23.346673879436448 19.33735370863847 25.24687448780229 32.069097924122794 15 25.13805352228864 27.159606493594442 22.1916804668887 25.51065951722822 16 25.765151829946763 25.796085709932548 23.56776905165342 24.870993408467264 17 24.114174818841278 25.93695822634125 25.006867756632868 24.941999198184604 18 24.91023788307609 25.062752684399015 25.961835902692172 24.065173529832727 19 25.484302631143574 25.043688233379424 25.452368475524974 24.019640659952028 20 25.81603812423002 24.29288494937828 24.924646471331034 24.96643045506067 21 26.647126584489566 24.30524081009518 24.505079061922157 24.5425535434931 22 25.735369935746988 24.392597437574544 24.880997268285178 24.99103535839329 23 24.37816458131339 24.25850685627222 25.463702540899085 25.899626021515303 24 24.821803838402648 24.97462585154411 25.127601763993873 25.075968546059368 25 24.975625671881144 24.47613470481092 25.373310052996366 25.174929570311566 26 24.789666028206643 25.12780102210036 25.45800977467158 24.624523175021412 27 25.263762191546373 24.826890430376785 24.772483466285383 25.13686391179146 28 24.521329603650678 24.789435814957464 25.584673928517837 25.104560652874024 29 24.675650468940937 24.86849030875921 25.460322394969236 24.99553682733062 30 24.663063234993096 24.98988073892922 25.684993174308314 24.66206285176937 31 25.13474993920477 24.801453544746828 24.802146148660505 25.2616503673879 32 24.89511415089403 24.856099385305825 24.773914435309365 25.47487202849078 33 24.49422465736558 24.615349098492487 25.275454216654225 25.61497202748771 34 25.192533220060394 24.552448757845227 25.436931903878058 24.81808611821632 35 25.794762325433933 24.579379272770925 25.193688688334355 24.432169713460787 36 24.84012565238738 25.121935453088902 24.995190302418393 25.042748592105323 37 25.57027834616009 24.927260316876453 24.81652516319776 24.685936173765697 38 24.732097164558716 24.787197611287894 25.230617686781663 25.250087537371723 39 25.161756014676552 24.810925533748676 24.82570058361447 25.2016178679603 40 25.409941401215068 24.866430937695984 25.245726290192877 24.477901370896067 41 24.591074748519436 25.15975325970524 25.50665484677231 24.742517145003017 42 25.697776334510948 25.255690365911747 24.948269400802296 24.09826389877501 43 24.977568813340206 24.536024562726524 25.265749924972873 25.220656698960394 44 24.744233863551894 25.018410544759746 24.887055059263872 25.35030053242449 45 24.872357403886184 25.317211570055875 24.8738964253917 24.936534600666242 46 24.699776996985072 24.887305757294538 25.113078996009342 25.299838249711048 47 24.855235121248523 24.782823825086318 25.383121934928333 24.97881911873683 48 25.46657217103709 25.29350973543532 24.641505281520796 24.598412812006792 49 24.680887083121718 25.35958877756745 24.859719593086783 25.099804546224046 50 24.845232864421295 25.354723581471188 24.823994465704217 24.976049088403297 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 12.0 1 15.5 2 19.0 3 56.0 4 93.0 5 127.5 6 162.0 7 166.0 8 170.0 9 224.0 10 278.0 11 434.5 12 591.0 13 1064.5 14 1538.0 15 2057.5 16 2577.0 17 2745.0 18 2913.0 19 3195.5 20 3478.0 21 4156.0 22 4834.0 23 5595.5 24 6357.0 25 7483.5 26 8610.0 27 10338.5 28 12067.0 29 14179.0 30 16291.0 31 18350.0 32 20409.0 33 23846.0 34 27283.0 35 31015.0 36 34747.0 37 41016.5 38 47286.0 39 51979.5 40 56673.0 41 62549.5 42 68426.0 43 70660.5 44 72895.0 45 79627.0 46 86359.0 47 91281.5 48 96204.0 49 98938.5 50 101673.0 51 99152.5 52 96632.0 53 94951.0 54 93270.0 55 93061.0 56 92852.0 57 89896.0 58 86940.0 59 78593.0 60 70246.0 61 62217.0 62 54188.0 63 47273.0 64 40358.0 65 34524.0 66 28690.0 67 24734.0 68 20778.0 69 18727.5 70 16677.0 71 13065.0 72 9453.0 73 7982.5 74 6512.0 75 5201.5 76 3891.0 77 3339.0 78 2787.0 79 2281.0 80 1775.0 81 1448.0 82 1121.0 83 914.5 84 708.0 85 521.5 86 335.0 87 245.5 88 156.0 89 120.0 90 84.0 91 67.5 92 51.0 93 42.5 94 34.0 95 33.5 96 33.0 97 27.0 98 21.0 99 17.5 100 14.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0066946199110308096 2 1.5389930829955885E-4 3 2.3084896244933827E-4 4 0.0 5 0.0 6 7.694965414977943E-5 7 7.694965414977943E-5 8 0.0 9 9.233958497973531E-4 10 8.464461956475737E-4 11 0.0 12 1.5389930829955885E-4 13 1.5389930829955885E-4 14 3.077986165991177E-4 15 0.004232230978237868 16 3.847482707488971E-4 17 0.0 18 3.847482707488971E-4 19 1.5389930829955885E-4 20 7.694965414977942E-4 21 0.0 22 7.694965414977943E-5 23 8.464461956475737E-4 24 0.0 25 0.0021545903161938242 26 0.00538647579048456 27 0.006540720602731251 28 0.005078677173885442 29 0.0020776406620440445 30 0.0037705330533391915 31 0.008233612994026399 32 0.0033088351284405156 33 0.004693928903136545 34 0.00269323789524228 35 0.0033088351284405156 36 0.007156317835929487 37 0.004155281324088089 38 0.008156663339876618 39 0.004847828211436104 40 0.0027701875493920595 41 0.0036166337450396326 42 0.0023084896244933827 43 0.001615942737145368 44 0.0018467916995947061 45 0.0018467916995947061 46 0.0013081441205462503 47 0.0023084896244933827 48 0.0015389930829955885 49 8.464461956475737E-4 50 0.0013850937746960298 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1299551.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.93807166513204 #Duplication Level Percentage of deduplicated Percentage of total 1 82.26885534427238 52.60111968810469 2 11.36546306218885 14.533715835552838 3 3.0908848868904317 5.928756582200219 4 1.145754921003987 2.9302944099932255 5 0.6194836112692694 1.980429376635468 6 0.35989544318950933 1.3806612383163184 7 0.2148889753215424 0.9617710692908901 8 0.1507906649148711 0.7713011471807951 9 0.11265113903389512 0.6482426940637147 >10 0.5642644697972999 6.517646694097684 >50 0.0486873266250421 2.1809127694342623 >100 0.05269930079389763 6.84970958937222 >500 0.004713900707765742 2.0144187186578693 >1k 9.669539913365625E-4 0.7010201870998822 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 7.694965414977943E-5 6 0.0 0.0 0.0 0.0 7.694965414977943E-5 7 0.0 0.0 0.0 0.0 7.694965414977943E-5 8 0.0 0.0 0.0 7.694965414977943E-5 7.694965414977943E-5 9 0.0 0.0 0.0 7.694965414977943E-5 7.694965414977943E-5 10 0.0 0.0 0.0 7.694965414977943E-5 7.694965414977943E-5 11 0.0 0.0 0.0 7.694965414977943E-5 7.694965414977943E-5 12 0.0 0.0 0.0 7.694965414977943E-5 2.3084896244933827E-4 13 0.0 0.0 0.0 7.694965414977943E-5 4.6169792489867653E-4 14 0.0 0.0 0.0 1.5389930829955885E-4 4.6169792489867653E-4 15 0.0 0.0 0.0 1.5389930829955885E-4 6.155972331982354E-4 16 0.0 0.0 0.0 1.5389930829955885E-4 6.925468873480148E-4 17 0.0 0.0 0.0 2.3084896244933827E-4 6.925468873480148E-4 18 0.0 0.0 0.0 2.3084896244933827E-4 6.925468873480148E-4 19 0.0 0.0 0.0 2.3084896244933827E-4 7.694965414977942E-4 20 0.0 0.0 0.0 2.3084896244933827E-4 0.0010003455039471324 21 0.0 0.0 0.0 3.077986165991177E-4 0.0010003455039471324 22 0.0 0.0 0.0 3.847482707488971E-4 0.0010003455039471324 23 0.0 0.0 0.0 0.0012311944663964708 0.0010003455039471324 24 0.0 0.0 0.0 0.001615942737145368 0.0010003455039471324 25 0.0 0.0 0.0 0.002154590316193824 0.0010003455039471324 26 0.0 0.0 0.0 0.0026162882410925006 0.0010003455039471324 27 0.0 0.0 0.0 0.003077986165991177 0.001077295158096912 28 0.0 0.0 0.0 0.005232576482185001 0.001077295158096912 29 0.0 0.0 0.0 0.011773297084916251 0.001077295158096912 30 0.0 0.0 0.0 0.022392349357585814 0.001077295158096912 31 0.0 0.0 0.0 0.04547724560251964 0.001077295158096912 32 0.0 0.0 0.0 0.06925468873480148 0.0011542448122466914 33 0.0 0.0 0.0 0.09180093740068686 0.0011542448122466914 34 0.0 0.0 0.0 0.11819466877406119 0.0011542448122466914 35 0.0 0.0 0.0 0.15074437247941788 0.0011542448122466914 36 0.0 0.0 0.0 0.19175853814125032 0.0011542448122466914 37 0.0 0.0 0.0 0.25039417460338226 0.0011542448122466914 38 0.0 0.0 0.0 0.3358082907096374 0.0011542448122466914 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATATA 205 0.0 21.46197 1 GTATCAA 1965 0.0 20.263266 1 ATACGAA 405 0.0 19.011065 40 CGAATGC 385 0.0 18.8566 43 CTAGCGG 440 0.0 18.00225 29 CTATACT 135 5.5355486E-8 17.92334 4 GCATTCG 410 0.0 17.707487 22 TTGTTCG 75 0.0012891939 17.603556 36 TAGCGGC 455 0.0 17.40944 30 CGCAATA 430 0.0 17.398865 36 TACGAAT 430 0.0 17.393509 41 TCTACAC 305 0.0 17.308979 3 CAATACG 450 0.0 17.113253 38 AATACGA 455 0.0 16.922588 39 GTACTAA 105 3.7768754E-5 16.760777 1 AACGCAG 2350 0.0 16.755028 6 GTATAAG 225 1.8189894E-12 16.621103 1 GTATTAC 160 2.1313099E-8 16.498888 1 CCGTTAA 80 0.0019903774 16.497618 16 CGGTCCA 515 0.0 16.231916 10 >>END_MODULE