##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063942_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2023214 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.260359012936842 32.0 32.0 32.0 32.0 32.0 2 31.366660175344773 32.0 32.0 32.0 32.0 32.0 3 31.449654856085417 32.0 32.0 32.0 32.0 32.0 4 31.540517216666156 32.0 32.0 32.0 32.0 32.0 5 31.480723739554985 32.0 32.0 32.0 32.0 32.0 6 35.08497667572486 36.0 36.0 36.0 36.0 36.0 7 35.113203052173425 36.0 36.0 36.0 36.0 36.0 8 35.04313137414035 36.0 36.0 36.0 36.0 36.0 9 35.164311832559484 36.0 36.0 36.0 36.0 36.0 10 35.01189295843149 36.0 36.0 36.0 36.0 36.0 11 35.160935521403076 36.0 36.0 36.0 36.0 36.0 12 35.0768406110278 36.0 36.0 36.0 36.0 36.0 13 35.11508174617218 36.0 36.0 36.0 36.0 36.0 14 35.0665115010078 36.0 36.0 36.0 36.0 36.0 15 35.02834104548506 36.0 36.0 36.0 36.0 36.0 16 35.05575139357478 36.0 36.0 36.0 36.0 36.0 17 35.025764452005575 36.0 36.0 36.0 36.0 36.0 18 35.01936028517003 36.0 36.0 36.0 36.0 36.0 19 35.01273666552327 36.0 36.0 36.0 36.0 36.0 20 35.00888240196044 36.0 36.0 36.0 36.0 36.0 21 35.00273920603554 36.0 36.0 36.0 36.0 36.0 22 34.9851375089338 36.0 36.0 36.0 36.0 36.0 23 34.941874166548864 36.0 36.0 36.0 36.0 36.0 24 34.91322272384434 36.0 36.0 36.0 36.0 36.0 25 34.88610201392438 36.0 36.0 36.0 32.0 36.0 26 34.831699464317666 36.0 36.0 36.0 32.0 36.0 27 34.81950352261303 36.0 36.0 36.0 32.0 36.0 28 34.808216036464756 36.0 36.0 36.0 32.0 36.0 29 34.784294691515576 36.0 36.0 36.0 32.0 36.0 30 34.76755746055533 36.0 36.0 36.0 32.0 36.0 31 34.7583354998532 36.0 36.0 36.0 32.0 36.0 32 34.715606950129846 36.0 36.0 36.0 32.0 36.0 33 34.703451537998454 36.0 36.0 36.0 32.0 36.0 34 34.696281263375994 36.0 36.0 36.0 32.0 36.0 35 34.66512538960288 36.0 36.0 36.0 32.0 36.0 36 34.645627699294295 36.0 36.0 36.0 32.0 36.0 37 34.63025315166858 36.0 36.0 36.0 32.0 36.0 38 34.60928255735676 36.0 36.0 36.0 32.0 36.0 39 34.58959902412696 36.0 36.0 36.0 32.0 36.0 40 34.58596273058609 36.0 36.0 36.0 32.0 36.0 41 34.563419391127184 36.0 36.0 36.0 32.0 36.0 42 34.53229465592864 36.0 36.0 36.0 32.0 36.0 43 34.51929207686384 36.0 36.0 36.0 32.0 36.0 44 34.47163226430818 36.0 36.0 36.0 32.0 36.0 45 34.44637888033594 36.0 36.0 36.0 32.0 36.0 46 34.42271702350814 36.0 36.0 36.0 32.0 36.0 47 34.401777073507795 36.0 36.0 36.0 32.0 36.0 48 34.362566194184105 36.0 36.0 36.0 32.0 36.0 49 34.34457452350567 36.0 36.0 36.0 32.0 36.0 50 33.74649196773055 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 1.0 18 0.0 19 3.0 20 17.0 21 56.0 22 179.0 23 582.0 24 1426.0 25 3331.0 26 6892.0 27 12787.0 28 21266.0 29 33632.0 30 49306.0 31 70626.0 32 103314.0 33 167339.0 34 350915.0 35 1201541.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.353703777849944 18.281942572251804 11.809074412675251 26.555279237222994 2 15.841061998691186 20.140677855520252 37.67796030454665 26.340299841241908 3 18.470598702062563 24.00981608434122 28.878020571270408 28.641564642325807 4 12.329244459557911 16.102399449588624 36.18159028160145 35.38676580925201 5 13.975338248944503 37.14135034652785 33.69045489009071 15.192856514436931 6 33.79688712491536 36.44416545983857 16.688233055392175 13.070714359853897 7 30.26779681625217 30.705961260628516 20.346498366706818 18.679743556412497 8 27.97069415296652 34.197717097647605 18.75861871260282 19.07297003678306 9 27.690646184110694 13.97257294809916 18.254484883982432 40.08229598380771 10 15.671008466286839 27.588460068969916 32.104719204863976 24.63581225987927 11 37.09241830078282 21.36654847188681 22.45536062917714 19.085672598153238 12 24.43642859155215 24.08055899205867 29.38524020950834 22.097772206880837 13 30.16008272027932 20.25302441078606 24.877570427895556 24.709322441039063 14 23.2059220684733 19.760064689216946 25.33155200740209 31.702461234907663 15 25.265816127554174 27.708887657560716 22.115516267289603 24.90977994759551 16 25.115114669829975 26.683323448003165 23.945778964017396 24.255782918149464 17 23.823975120773184 26.374570361810466 25.2387537848196 24.56270073259675 18 24.043202676146002 26.081846256044855 26.374796857268258 23.500154210540884 19 25.7820110883036 24.950956720819807 25.48357488806171 23.783457302814877 20 25.875580330377456 24.872911786817028 25.249295547006945 24.00221233579857 21 26.473373553168372 24.321747477034066 24.756056452752897 24.448822517044665 22 25.956054036848336 25.11872211117767 24.96016235569975 23.96506149627424 23 24.91597419518107 25.27461610092587 25.328244335177946 24.481165368715114 24 24.858998609633122 25.391519503441813 25.203352894686503 24.54612899223856 25 24.70849094420217 25.187885006714676 25.369776969808406 24.733847079274746 26 24.583684690767562 25.372966122388053 25.659901161876835 24.38344802496755 27 25.101873966925808 25.32672824909248 25.252337021424676 24.31906076255704 28 24.534334950630903 25.415841212221867 25.467147901665143 24.582675935482083 29 24.797248270530716 25.165137378877837 25.028816250190296 25.00879810040115 30 24.40572927787927 25.645725086399835 25.578305535125388 24.370240100595506 31 25.24780542732565 24.993191004315744 25.16090731906484 24.598096249293768 32 24.690174198392313 25.611656656713556 25.01531026076624 24.682858884127892 33 24.50988000259005 25.296780676645607 25.392078697975958 24.801260622788387 34 24.677830720259397 25.04918048992665 25.71477292947666 24.55821586033729 35 24.843054070659157 25.196908383910426 25.567419898386127 24.392617647044286 36 24.56438406271703 25.29481403125471 25.458576262138198 24.682225643890057 37 24.95173358719539 24.87240169518166 25.105256862332233 25.07060785529072 38 24.738304457066707 25.208187411427357 25.527160134390677 24.52634799711526 39 25.333517206472727 24.838097723630764 25.169267087597756 24.65911798229875 40 25.164025097297998 24.99453826329624 25.449320520412066 24.392116118993695 41 24.77029575240529 25.0939502606091 25.682489391516672 24.453264595468934 42 25.018634068415203 25.261717220844847 25.407626424987246 24.3120222857527 43 24.502467397923272 24.806641412743478 25.736265213643446 24.954625975689805 44 24.20210084282825 24.99352507033454 25.76755101354891 25.036823073288296 45 24.393211921348126 25.105254365127617 25.655967742094926 24.845565971429334 46 24.57002371993181 24.848049592895983 25.733135691948323 24.848790995223887 47 24.59759990865833 24.93395275638811 25.650797040094943 24.81765029485862 48 24.280928288561874 25.46580504595772 25.33803488001961 24.915231785460794 49 24.595864187828624 24.950301649955566 25.521029494772158 24.93280466744365 50 24.02800726971133 25.444681638739635 25.46232704903002 25.06498404251901 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 6.0 1 15.0 2 24.0 3 64.0 4 104.0 5 145.0 6 186.0 7 191.0 8 196.0 9 265.5 10 335.0 11 528.5 12 722.0 13 1238.5 14 1755.0 15 2317.0 16 2879.0 17 2950.5 18 3022.0 19 3109.0 20 3196.0 21 3888.0 22 4580.0 23 5871.5 24 7163.0 25 9118.5 26 11074.0 27 14263.0 28 17452.0 29 21351.5 30 25251.0 31 30417.0 32 35583.0 33 42543.5 34 49504.0 35 58029.5 36 66555.0 37 74330.5 38 82106.0 39 88667.5 40 95229.0 41 103430.5 42 111632.0 43 117155.0 44 122678.0 45 130252.0 46 137826.0 47 143013.0 48 148200.0 49 152857.0 50 157514.0 51 160661.5 52 163809.0 53 159645.5 54 155482.0 55 149972.5 56 144463.0 57 135076.0 58 125689.0 59 114850.5 60 104012.0 61 91226.0 62 78440.0 63 66973.0 64 55506.0 65 46998.5 66 38491.0 67 31618.0 68 24745.0 69 20827.0 70 16909.0 71 13614.5 72 10320.0 73 8910.0 74 7500.0 75 6123.0 76 4746.0 77 3986.0 78 3226.0 79 2788.5 80 2351.0 81 1820.5 82 1290.0 83 985.0 84 680.0 85 498.0 86 316.0 87 252.0 88 188.0 89 147.0 90 106.0 91 84.5 92 63.0 93 53.0 94 43.0 95 33.0 96 23.0 97 22.5 98 22.0 99 22.0 100 22.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.009143867134173646 2 4.942630883337106E-4 3 1.9770523533348426E-4 4 0.0 5 0.0 6 1.9770523533348426E-4 7 4.9426308833371065E-5 8 0.0 9 0.001433362956167761 10 6.425420148338238E-4 11 0.0 12 4.9426308833371065E-5 13 4.942630883337106E-4 14 9.885261766674213E-5 15 0.005189762427503962 16 6.919683236671949E-4 17 0.0 18 2.9655785300022636E-4 19 4.9426308833371065E-5 20 6.425420148338238E-4 21 0.0 22 9.885261766674213E-5 23 0.0012850840296676476 24 3.4598416183359744E-4 25 0.0017299208091679872 26 0.005338041354004074 27 0.006227714913004755 28 0.004250662559669912 29 0.0024713154416685533 30 0.0030644311476690053 31 0.007661077869172514 32 0.003015004838835635 33 0.004300088868503283 34 0.002669020677002037 35 0.0032127100741691193 36 0.007858783104505999 37 0.0033609890006692325 38 0.007759930486839256 39 0.0039541047066696845 40 0.002372462824001811 41 0.003410415309502603 42 0.0018781997356681003 43 0.001482789265001132 44 0.0012850840296676476 45 9.885261766674211E-4 46 0.0010379524855007923 47 0.002026478662168214 48 0.0024713154416685533 49 3.954104706669685E-4 50 0.0012356577208342766 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2023214.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.761465201330005 #Duplication Level Percentage of deduplicated Percentage of total 1 70.64222089592185 37.27187079544848 2 15.340534590930982 16.187781639784085 3 6.126641120965518 9.697516869145788 4 2.8731811825142426 6.063729959133656 5 1.5659280302652425 4.131032863831342 6 0.9315818438549216 2.9490973822045374 7 0.5845220213154004 2.15881668009305 8 0.38422732707326746 1.6217917397420993 9 0.2675730509623533 1.2705791595447513 >10 1.1604393926907497 10.514355133872861 >50 0.0730576347937739 2.6932851549671732 >100 0.04801846702685634 4.700555184287046 >500 0.001885856077204953 0.6245150752405276 >1k 1.8858560772049316E-4 0.11507236270463848 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.4827892650011318E-4 2 0.0 0.0 0.0 0.0 1.4827892650011318E-4 3 0.0 0.0 0.0 0.0 1.4827892650011318E-4 4 0.0 0.0 0.0 0.0 1.4827892650011318E-4 5 0.0 0.0 0.0 0.0 1.4827892650011318E-4 6 0.0 0.0 0.0 0.0 1.4827892650011318E-4 7 0.0 0.0 0.0 0.0 1.4827892650011318E-4 8 0.0 0.0 0.0 0.0 1.4827892650011318E-4 9 0.0 0.0 0.0 0.0 1.4827892650011318E-4 10 0.0 0.0 0.0 0.0 1.4827892650011318E-4 11 0.0 0.0 0.0 4.9426308833371065E-5 1.4827892650011318E-4 12 0.0 0.0 0.0 4.9426308833371065E-5 3.4598416183359744E-4 13 0.0 0.0 0.0 4.9426308833371065E-5 3.954104706669685E-4 14 0.0 0.0 0.0 9.885261766674213E-5 3.954104706669685E-4 15 0.0 0.0 0.0 9.885261766674213E-5 5.931157060004527E-4 16 0.0 0.0 0.0 1.4827892650011318E-4 5.931157060004527E-4 17 0.0 0.0 0.0 1.4827892650011318E-4 5.931157060004527E-4 18 0.0 0.0 0.0 1.9770523533348426E-4 6.425420148338238E-4 19 0.0 0.0 0.0 1.9770523533348426E-4 6.919683236671949E-4 20 0.0 0.0 0.0 3.4598416183359744E-4 8.40247250167308E-4 21 0.0 0.0 0.0 3.954104706669685E-4 9.885261766674213E-4 22 0.0 0.0 0.0 4.4483677950033954E-4 0.0011368051031675345 23 0.0 0.0 0.0 6.919683236671949E-4 0.0011368051031675345 24 0.0 0.0 0.0 6.919683236671949E-4 0.0011368051031675345 25 0.0 0.0 0.0 9.885261766674213E-4 0.0011368051031675345 26 0.0 4.9426308833371065E-5 0.0 0.0011368051031675345 0.0012356577208342766 27 0.0 4.9426308833371065E-5 0.0 0.0020264786621682135 0.0013345103385010186 28 0.0 4.9426308833371065E-5 0.0 0.005733451824671043 0.0013345103385010186 29 0.0 4.9426308833371065E-5 0.0 0.014580761105844463 0.0013345103385010186 30 0.0 4.9426308833371065E-5 0.0 0.033708742624359064 0.0013345103385010186 31 0.0 4.9426308833371065E-5 0.0 0.07077847424938737 0.0013345103385010186 32 0.0 4.9426308833371065E-5 0.0 0.11234599997825243 0.0013839366473343898 33 0.0 4.9426308833371065E-5 0.0 0.15430893617778446 0.0014333629561677607 34 0.0 4.9426308833371065E-5 0.0 0.20279614514332148 0.0014333629561677607 35 0.0 4.9426308833371065E-5 0.0 0.25162933827069206 0.0014333629561677607 36 0.0 4.9426308833371065E-5 0.0 0.3296240536097516 0.0014333629561677607 37 0.0 4.9426308833371065E-5 0.0 0.4481483421921754 0.0014333629561677607 38 0.0 4.9426308833371065E-5 0.0 0.61565410282847 0.001631068191501245 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 3085 0.0 29.095936 1 GGTATCA 1240 0.0 26.613188 1 TAAACGT 55 0.004485003 19.99972 4 TCAACGC 4500 0.0 19.60417 4 ATCAACG 4520 0.0 19.56513 3 TCGGGTA 270 0.0 19.555283 25 AGGTATA 490 0.0 19.305851 7 GGTATAA 490 0.0 19.305851 8 CAACGCA 4605 0.0 19.15717 5 TATCAAC 4650 0.0 19.112293 2 AACGCAG 4770 0.0 18.54062 6 CCGTTAT 250 0.0 18.481112 9 ACCGTTA 250 0.0 18.47974 8 TAGACGT 120 3.1650416E-7 18.333076 4 CCTTATA 465 0.0 17.97691 2 CGAAATT 295 0.0 17.898054 13 GTCCTAA 805 0.0 17.764164 1 GTATAGG 510 0.0 17.255087 1 TTAGGAC 895 0.0 17.205612 3 CGCACGA 295 0.0 17.152302 42 >>END_MODULE