##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063941_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 970987 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.178081683894842 32.0 32.0 32.0 32.0 32.0 2 31.161008334818078 32.0 32.0 32.0 32.0 32.0 3 31.338455612691003 32.0 32.0 32.0 32.0 32.0 4 31.47200219982348 32.0 32.0 32.0 32.0 32.0 5 31.36321701526385 32.0 32.0 32.0 32.0 32.0 6 34.961487640926194 36.0 36.0 36.0 36.0 36.0 7 34.99316468706584 36.0 36.0 36.0 36.0 36.0 8 34.92290936953842 36.0 36.0 36.0 36.0 36.0 9 35.073895942994085 36.0 36.0 36.0 36.0 36.0 10 34.8774617991796 36.0 36.0 36.0 32.0 36.0 11 35.08793938538827 36.0 36.0 36.0 36.0 36.0 12 34.97581018077482 36.0 36.0 36.0 36.0 36.0 13 35.02662342544236 36.0 36.0 36.0 36.0 36.0 14 34.968215846350155 36.0 36.0 36.0 32.0 36.0 15 34.91920180187788 36.0 36.0 36.0 32.0 36.0 16 34.93948837626044 36.0 36.0 36.0 36.0 36.0 17 34.89956508171582 36.0 36.0 36.0 32.0 36.0 18 34.89777206079999 36.0 36.0 36.0 32.0 36.0 19 34.893726692530386 36.0 36.0 36.0 32.0 36.0 20 34.88353294122373 36.0 36.0 36.0 32.0 36.0 21 34.88486766558152 36.0 36.0 36.0 32.0 36.0 22 34.86073140011143 36.0 36.0 36.0 32.0 36.0 23 34.79692519055353 36.0 36.0 36.0 32.0 36.0 24 34.77447895800871 36.0 36.0 36.0 32.0 36.0 25 34.74240437822546 36.0 36.0 36.0 32.0 36.0 26 34.68524192393925 36.0 36.0 36.0 32.0 36.0 27 34.6733344524695 36.0 36.0 36.0 32.0 36.0 28 34.644034369152216 36.0 36.0 36.0 32.0 36.0 29 34.60308016482198 36.0 36.0 36.0 32.0 36.0 30 34.58292129554773 36.0 36.0 36.0 32.0 36.0 31 34.57584087119601 36.0 36.0 36.0 32.0 36.0 32 34.53358180902525 36.0 36.0 36.0 32.0 36.0 33 34.509857495517444 36.0 36.0 36.0 32.0 36.0 34 34.49229495348548 36.0 36.0 36.0 32.0 36.0 35 34.44876192987136 36.0 36.0 36.0 32.0 36.0 36 34.41058016224728 36.0 36.0 36.0 32.0 36.0 37 34.387094780877604 36.0 36.0 36.0 32.0 36.0 38 34.33186850081412 36.0 36.0 36.0 32.0 36.0 39 34.31153043243627 36.0 36.0 36.0 32.0 36.0 40 34.30258592545523 36.0 36.0 36.0 32.0 36.0 41 34.27873699647884 36.0 36.0 36.0 32.0 36.0 42 34.200489810883155 36.0 36.0 36.0 32.0 36.0 43 34.204689661138616 36.0 36.0 36.0 32.0 36.0 44 34.13104706860133 36.0 36.0 36.0 32.0 36.0 45 34.07692070027714 36.0 36.0 36.0 32.0 36.0 46 34.048274590699975 36.0 36.0 36.0 32.0 36.0 47 34.009255530712565 36.0 36.0 36.0 32.0 36.0 48 33.97045377538525 36.0 36.0 36.0 32.0 36.0 49 33.932049553701546 36.0 36.0 36.0 32.0 36.0 50 33.27600163544929 36.0 36.0 36.0 21.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 2.0 20 10.0 21 23.0 22 93.0 23 289.0 24 735.0 25 1812.0 26 3781.0 27 7072.0 28 11742.0 29 18812.0 30 27747.0 31 39988.0 32 59580.0 33 98670.0 34 198240.0 35 502390.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.02737194890213 18.11311115940432 11.689828523638896 26.16968836805466 2 15.429486552315433 20.67004124677518 37.91304706045923 25.98742514045016 3 18.329138276222885 25.071370897975665 28.899034381617 27.700456444184457 4 11.802732683341796 16.16355316806507 36.701212271637004 35.33250187695613 5 13.603271722484441 37.81955886124119 33.8717202187053 14.70544919756907 6 33.90048878150663 36.508456352614765 16.753382644034005 12.837672221844599 7 29.49888051938957 30.810227953853094 21.117297262782365 18.573594263974968 8 27.744964659671034 34.239284357051126 19.22095764412912 18.794793339148722 9 27.486897244945563 13.456418727902458 18.142410906930014 40.914273120221964 10 14.879281880901893 27.729584821948112 32.90672011089815 24.484413186251842 11 37.50678433387883 20.727774934164927 22.71091168058893 19.054529051367318 12 24.271204734156825 23.682318797593375 30.02030925265658 22.026167215593222 13 30.022739818575793 19.84955467855289 25.324104207690347 24.80360129518097 14 22.9221636563246 19.665989004990802 25.93446249482485 31.477384843859745 15 24.916370392647185 28.072461141070377 22.61006768642605 24.40110077985639 16 24.96294991776375 25.897054840301013 24.905688359116482 24.23430688281875 17 23.464474807592687 26.245459516965724 25.878410318572755 24.411655356868835 18 23.997585946583918 25.58968713085014 27.071075541127993 23.34165138143795 19 25.298175979699007 25.019387489224883 25.761518949275324 23.920917581800786 20 25.33999050446815 24.980972890359563 25.66203527765162 24.017001327520667 21 26.269146754796925 24.440697970209694 24.845337785160872 24.44481748983251 22 25.08334303136911 25.224024626488305 25.410123925449053 24.28250841669353 23 24.076521022683387 25.032673343803907 25.770282448054786 25.120523185457916 24 24.618119351091263 25.36519654288845 25.598671038863667 24.418013067156615 25 24.701227223854037 24.983830635692893 25.8619198081922 24.45302233226087 26 24.025806159243036 25.855905311499995 26.259023555741862 23.85926497351511 27 24.646087835102936 25.415656899085725 25.572825313384133 24.3654299524272 28 23.779813338990976 25.631592715647844 25.933768504919886 24.654825440441297 29 24.010204354874258 25.29223715134949 25.739939317663584 24.957619176112665 30 24.023383188081002 25.773105626013177 25.92213431326304 24.28137687264278 31 24.54612775678401 25.31261490355054 25.4940917044915 24.647165635173955 32 24.217016867737904 25.808318725887414 25.256188167247874 24.718476239126808 33 24.009368183194535 25.303775905148175 25.947787003602674 24.73906890805462 34 24.415092202087614 25.537274773035072 26.00083422162488 24.046798803252432 35 24.6686035673715 25.50601616738777 26.004797279413204 23.82058298582753 36 24.07686635109359 25.98771077686182 25.594068379659955 24.34135449238464 37 24.678617700795705 25.686690107336847 25.266797258801066 24.36789493306638 38 24.119647591248693 25.8739666995565 25.59526139179622 24.411124317398585 39 24.687677017354137 25.211802873474433 25.54621762191668 24.554302487254752 40 25.265946216503753 25.59386673285498 25.548036133050868 23.592150917590402 41 24.13694019551703 25.527928944842444 26.297679419628327 24.037451440012195 42 25.03455307579019 26.120168491302515 25.495947351617453 23.349331081289844 43 24.15116336552088 25.530909105889332 25.820308637906603 24.49761889068319 44 23.885294559895527 25.893072317075433 25.453204720208777 24.768428402820263 45 24.127266285742536 26.1431843554706 25.38363619136288 24.345913167423983 46 24.014937501222995 25.678722196875526 25.378303753222266 24.92803654867922 47 24.51241805832342 25.556945924930353 25.72512912411879 24.205506892627437 48 24.712269004149505 26.011499970647577 24.862841788376233 24.41338923682668 49 24.223979896599314 25.90485900842448 25.2460400832149 24.625121011761316 50 24.37684028181866 26.3937737067434 24.74193571642641 24.487450295011527 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 23.0 1 17.0 2 11.0 3 52.5 4 94.0 5 128.0 6 162.0 7 164.0 8 166.0 9 222.0 10 278.0 11 418.0 12 558.0 13 1021.5 14 1485.0 15 1997.0 16 2509.0 17 2810.5 18 3112.0 19 3349.0 20 3586.0 21 4120.5 22 4655.0 23 5360.0 24 6065.0 25 6783.0 26 7501.0 27 9666.5 28 11832.0 29 13491.0 30 15150.0 31 17340.5 32 19531.0 33 22638.0 34 25745.0 35 30023.5 36 34302.0 37 37506.0 38 40710.0 39 42846.5 40 44983.0 41 48159.0 42 51335.0 43 52597.5 44 53860.0 45 58616.0 46 63372.0 47 66787.0 48 70202.0 49 72333.5 50 74465.0 51 71998.0 52 69531.0 53 67925.0 54 66319.0 55 65483.0 56 64647.0 57 62429.5 58 60212.0 59 54790.0 60 49368.0 61 43602.5 62 37837.0 63 32702.0 64 27567.0 65 23237.0 66 18907.0 67 16111.0 68 13315.0 69 11853.0 70 10391.0 71 8097.5 72 5804.0 73 5036.5 74 4269.0 75 3344.0 76 2419.0 77 2153.5 78 1888.0 79 1557.0 80 1226.0 81 974.0 82 722.0 83 560.5 84 399.0 85 311.0 86 223.0 87 167.0 88 111.0 89 80.0 90 49.0 91 43.0 92 37.0 93 25.5 94 14.0 95 14.0 96 14.0 97 13.0 98 12.0 99 13.0 100 14.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.006797207377647693 2 2.0597598114083915E-4 3 3.0896397171125876E-4 4 0.0 5 0.0 6 1.0298799057041958E-4 7 1.0298799057041958E-4 8 0.0 9 8.239039245633566E-4 10 6.179279434225175E-4 11 0.0 12 1.0298799057041958E-4 13 3.0896397171125876E-4 14 1.0298799057041958E-4 15 0.004016531632246364 16 4.119519622816783E-4 17 0.0 18 6.179279434225175E-4 19 0.0 20 4.119519622816783E-4 21 0.0 22 0.0 23 0.001235855886845035 24 3.0896397171125876E-4 25 0.0015448198585562936 26 0.0057673274719434965 27 0.005561351490802657 28 0.002986651726542168 29 0.002986651726542168 30 0.0033986036888238465 31 0.006591231396506853 32 0.002162747801978811 33 0.004222507613387203 34 0.0022657357925492307 35 0.0020597598114083914 36 0.005664339481373078 37 0.0025746997642604897 38 0.007106171349358952 39 0.0038105556511055243 40 0.0020597598114083914 41 0.0023687237831196504 42 0.0017507958396971329 43 0.0011328678962746154 44 0.0013388438774154545 45 0.0015448198585562936 46 8.239039245633566E-4 47 0.0022657357925492307 48 0.0028836637359717482 49 7.209159339929371E-4 50 8.239039245633566E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 970987.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 60.70723976276281 #Duplication Level Percentage of deduplicated Percentage of total 1 77.13800623262256 46.8283543918531 2 13.881454660572912 16.85409592670642 3 4.403010251968318 8.018837971324302 4 1.7886298896518433 4.343311342317538 5 0.8859872417512046 2.6892919955869634 6 0.48306006390779527 1.7595145871679632 7 0.3073297184456673 1.3059997232732459 8 0.18975086156152582 0.9215400838405089 9 0.13163928610232958 0.7192311933251747 >10 0.6805925915646132 7.4979632004114265 >50 0.06090524886303144 2.615603582896971 >100 0.04690493873627223 5.436491728643757 >500 0.0027290142518407285 1.009764272652688 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 6.179279434225175E-4 2 0.0 0.0 0.0 0.0 6.179279434225175E-4 3 0.0 0.0 0.0 0.0 6.179279434225175E-4 4 0.0 0.0 0.0 0.0 6.179279434225175E-4 5 0.0 0.0 0.0 0.0 6.179279434225175E-4 6 0.0 0.0 0.0 0.0 6.179279434225175E-4 7 0.0 0.0 0.0 0.0 6.179279434225175E-4 8 0.0 0.0 0.0 0.0 6.179279434225175E-4 9 0.0 0.0 0.0 0.0 6.179279434225175E-4 10 0.0 0.0 0.0 0.0 6.179279434225175E-4 11 0.0 0.0 0.0 1.0298799057041959E-4 6.179279434225175E-4 12 0.0 0.0 0.0 1.0298799057041959E-4 0.001956771820837972 13 0.0 0.0 0.0 1.0298799057041959E-4 0.002162747801978811 14 0.0 0.0 0.0 1.0298799057041959E-4 0.002162747801978811 15 0.0 0.0 0.0 1.0298799057041959E-4 0.0026776877548309094 16 0.0 0.0 0.0 2.0597598114083918E-4 0.0027806757454013286 17 0.0 0.0 0.0 2.0597598114083918E-4 0.002986651726542168 18 0.0 0.0 0.0 3.0896397171125876E-4 0.0030896397171125876 19 0.0 0.0 0.0 5.14939952852098E-4 0.0030896397171125876 20 0.0 0.0 0.0 5.14939952852098E-4 0.003398603688823846 21 0.0 0.0 0.0 8.239039245633567E-4 0.0035015916793942658 22 0.0 0.0 0.0 9.268919151337763E-4 0.0036045796699646854 23 0.0 0.0 0.0 0.002059759811408392 0.0036045796699646854 24 0.0 0.0 0.0 0.0038105556511055247 0.003707567660535105 25 0.0 0.0 0.0 0.00484043555680972 0.003707567660535105 26 0.0 0.0 0.0 0.005973303453084336 0.003707567660535105 27 0.0 0.0 0.0 0.0070031833587885315 0.003707567660535105 28 0.0 0.0 0.0 0.010298799057041959 0.003707567660535105 29 0.0 0.0 0.0 0.015345210594992519 0.003707567660535105 30 0.0 0.0 0.0 0.025746997642604897 0.003707567660535105 31 0.0 0.0 0.0 0.04376989599242832 0.003707567660535105 32 0.0 0.0 0.0 0.0651913980310756 0.003707567660535105 33 0.0 0.0 0.0 0.08300832039975818 0.0038105556511055247 34 0.0 0.0 0.0 0.10442982243840546 0.004325495603957622 35 0.0 0.0 0.0 0.13100072400557372 0.004325495603957622 36 0.0 0.0 0.0 0.1687973165449177 0.004325495603957622 37 0.0 0.0 0.0 0.22060027580183875 0.004325495603957622 38 0.0 0.0 0.0 0.2904261334085832 0.0045314715850984615 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTCGTA 140 0.0 23.569773 10 ATACCGT 155 0.0 22.706913 6 GATATAC 420 0.0 20.949831 1 GTATAGG 105 7.752169E-8 20.949831 1 GGGTATA 85 6.1178307E-6 20.703363 1 CCGTCGT 165 3.6379788E-12 19.998594 9 GGCGTTA 155 3.45608E-11 19.872643 42 TATACAG 240 0.0 19.247656 5 GATTTCG 175 9.094947E-12 18.858732 41 ATACACT 505 0.0 17.859213 4 ACCGTCG 185 2.1827873E-11 17.835667 8 TAATACC 125 4.856229E-7 17.597858 4 CTATACA 175 1.9099389E-10 17.597858 4 TAGGACG 450 0.0 17.597858 4 TACCGTC 200 3.6379788E-12 17.597858 7 GTCCTAC 430 0.0 17.393232 1 GTCGTAG 190 3.274181E-11 17.367203 11 TAACGCC 255 0.0 17.252802 4 AACGCCG 255 0.0 17.252802 5 CCTTATA 115 4.276091E-6 17.215296 2 >>END_MODULE